Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4543524 .. 4545338

Gene Structure 1815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG030100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCCAAGCTCAACGACAAGGTCGCCATGCGACACATGGACATGTACATGAAACAGGAAGACAAGTACACCGAAGCTGTCATGTACGGCTCCGACCGCTGCCAGAGCAGGCTCCAGTCCGAGATGGCCTCCCGCTTATCCTTCGACCTCTCCACTCCTCCCCTCAAATTCGGACCATGGTACGGAACCGATGTTTTTGAAGAATCGGATAATTATGTGTTTGTCAACATTAGACACACGAAAGATTTCCGGTTTGTGACTGTAAATACCTTCTCTACTGCATCTTCCAAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCATGTGGATTCTTCGAGCTGTCCAAGAATATGGGAGGGACGAGTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

130

Amino Acids

15.24

Weight (kDa)

6.1

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	97, 133
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	4 cut(s)	47, 68, 86, 182
AfiI	CCNNNNNNNGG	2 cut(s)	182, 305
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	3 cut(s)	10, 77, 359
AluI	AGCT	3 cut(s)	10, 77, 359
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	99, 295
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	86, 282
BccI	CCATC	1 cut(s)	118
BceAI	ACGGC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	100, 296
BlsI	GCNGC	2 cut(s)	101, 297
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	3 cut(s)	91, 113, 187
BmsI	GCATC	2 cut(s)	282, 290
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 305
Bse1I	ACTGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	182, 305
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	86, 282
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	182, 305
BsnI	GGCC	1 cut(s)	128
Bsp1407I	TGTACA	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	2 cut(s)	97, 133
BspANI	GGCC	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	91, 113, 187
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	262
BstAUI	TGTACA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	176
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 105
BstNSI	RCATGY	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	86, 282
BstV2I	GAAGAC	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	4 cut(s)	46, 67, 85, 181
CviAII	CATG	7 cut(s)	28, 37, 43, 49, 82, 177, 343
CviJI	RGCY	6 cut(s)	10, 77, 90, 112, 128, 359
CviKI_1	RGCY	6 cut(s)	10, 77, 90, 112, 128, 359
CviQI	GTAC	4 cut(s)	46, 67, 85, 181
Eco130I	CCWWGG	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	7 cut(s)	31, 40, 46, 52, 85, 180, 346
FaiI	YATR	9 cut(s)	29, 38, 44, 50, 83, 178, 216, 344, 372
FatI	CATG	7 cut(s)	27, 36, 42, 48, 81, 176, 342
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	100, 296
Fsp4HI	GCNGC	2 cut(s)	100, 296
GluI	GCNGC	2 cut(s)	100, 296
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	7 cut(s)	31, 40, 46, 52, 85, 180, 346
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	203, 349
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	69, 226
Hpy188I	TCNGA	4 cut(s)	94, 121, 173, 208
Hpy8I	GTNNAC	2 cut(s)	69, 226
HpyAV	CCTTC	3 cut(s)	151, 280, 343
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 105
Hsp92II	CATG	7 cut(s)	31, 40, 46, 52, 85, 180, 346
LmnI	GCTCC	2 cut(s)	95, 117
LpnPI	CCDG	5 cut(s)	41, 94, 116, 128, 263
Lsp1109I	GCAGC	2 cut(s)	86, 282
LweI	GCATC	2 cut(s)	282, 290
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	4 cut(s)	71, 212, 276, 344
MluCI	AATT	2 cut(s)	167, 211
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	6 cut(s)	139, 158, 168, 173, 298, 369
MroXI	GAANNNNTTC	1 cut(s)	245
MslI	CAYNNNNRTG	2 cut(s)	41, 47
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	2 cut(s)	96, 105
NcoI	CCATGG	1 cut(s)	176
NlaIII	CATG	7 cut(s)	31, 40, 46, 52, 85, 180, 346
NlaIV	GGNNCC	3 cut(s)	91, 113, 187
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	46
PciI	ACATGT	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	203, 349
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	101, 297
PscI	ACATGT	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	91, 113, 187
PspPI	GGNCC	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	4 cut(s)	47, 68, 86, 182
RsaNI	GTAC	4 cut(s)	46, 67, 85, 181
RseI	CAYNNNNRTG	2 cut(s)	41, 47
SatI	GCNGC	2 cut(s)	100, 296
Sau96I	GGNCC	1 cut(s)	173
SetI	ASST	6 cut(s)	12, 24, 79, 150, 272, 361
SfaNI	GCATC	2 cut(s)	282, 290
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	41, 47
Sse9I	AATT	2 cut(s)	167, 211
SsiI	CCGC	2 cut(s)	97, 133
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	2 cut(s)	144, 355
TasI	AATT	2 cut(s)	167, 211
TatI	WGTACW	2 cut(s)	45, 66
TfiI	GAWTC	2 cut(s)	203, 349
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	99, 295
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	65, 376
TspGWI	ACGGA	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.