Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4538732 .. 4540433

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG029800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGTACGGAACGGTTGTACTGCCGGCCGACGCGTGGAGGAAGGTAAGCGGTTTCCGGATCTGTGTCGTCGACTCACGAGTTTACACAACGAGTTCATTTCTCATAAGTCACCTTATGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTAAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATACATATGAAGAATTATCGGAAGTTTCGCCGGATCATCGGTTTATTGCATATACAATGTATGATAAAGACAAGAACTTGTTTAGGTTGTCTGTTAGGATCTTGAATTCTGGTGCATTGTGTAGTAAGCCACAAGCGGAGCGTGTTTCAAATTTGGCTTTCGCCAAAGATGGGCAGGCATTGCTTTATGTTGTTACCGATCAGAACAAGCGGCCATATAGGTGTTTTCTCGAGCAGGATGTTTTCGAAGAATCGGATAATAATGTGTATGTCAACATTAGTCACACGAAAGATTTTTGGTTTGTGACTGTAAATACCTTCTCTACCGCGTCTTCCAAGGCCTTTTTGATAAATGCAGTTGATCCATTGTCGGGGTTGAACTTAGTTTGGCAGTGTGAAGGTATAGCGCATTGGGTACTTGAGCATCACCAAGGATATCTTTTTCTGTTTACAGATGCAGCCAAAGGAGGTCAGCCAGTTGATAACCATTATCTCCTTCGTAGTCATGTGGATTCTTCGAGCTGTCCAAGAATATGGGAGGATGTATACGTCAGTGACCCAGACTGGTTTTTTGAGGATGTGGATTTCAGTCATACACACTTGGTACTTAATATAAAGGAAGGGCGAAACTTTAGTCTTTGTTCAGTTGCTTTACATTTGCCTGATGGGAAGGGACCAGTTCATCTGAAAGAGCTTCACCCACAATTCTTGCCTCTTCCAAAATTGTTCGATGCATATGTAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

315

Amino Acids

36.19

Weight (kDa)

6.39

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	70, 744
AccII	CGCG	2 cut(s)	33, 527
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	4 cut(s)	49, 335, 409, 525
AclWI	GGATC	4 cut(s)	66, 240, 305, 554
AcoI	YGGCCR	2 cut(s)	25, 410
AcsI	RAATTY	2 cut(s)	304, 349
AfaI	GTAC	4 cut(s)	6, 19, 615, 804
AfiI	CCNNNNNNNGG	4 cut(s)	34, 119, 369, 569
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	304, 348, 577
AluBI	AGCT	4 cut(s)	160, 182, 720, 892
AluI	AGCT	4 cut(s)	160, 182, 720, 892
AlwI	GGATC	4 cut(s)	66, 240, 305, 554
AlwNI	CAGNNNCTG	1 cut(s)	160
Ama87I	CYCGRG	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	3 cut(s)	25, 410, 537
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	2 cut(s)	304, 349
ArsI	GACNNNNNNTTYG	4 cut(s)	752, 784, 817, 849
AspLEI	GCGC	1 cut(s)	607
AspS9I	GGNCC	1 cut(s)	872
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	102, 617, 887
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	2 cut(s)	362, 857
BcnI	CCSGG	1 cut(s)	139
BisI	GCNGC	2 cut(s)	410, 657
BlsI	GCNGC	2 cut(s)	411, 658
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	872
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	872
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	631, 643, 919
BpiI	GAAGAC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	534, 628
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 119, 369, 569
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	3 cut(s)	674, 767, 875
Bse3DI	GCAATG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	534, 628
BseGI	GGATG	3 cut(s)	442, 745, 781
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	34, 119, 369, 569
BseMI	GCAATG	1 cut(s)	377
BseNI	ACTGG	3 cut(s)	674, 767, 875
BseX3I	CGGCCG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	668
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	33, 527
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	27, 412, 539
BsiEI	CGRYCG	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	4 cut(s)	24, 56, 138, 230
BslFI	GGGAC	1 cut(s)	885
BslI	CCNNNNNNNGG	4 cut(s)	34, 119, 369, 569
BsmFI	GGGAC	1 cut(s)	885
BsnI	GGCC	3 cut(s)	27, 412, 539
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	444
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	58, 232, 297, 397, 559
BspACI	CCGC	4 cut(s)	49, 335, 409, 525
BspANI	GGCC	3 cut(s)	27, 412, 539
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	2 cut(s)	33, 527
BspLI	GGNNCC	1 cut(s)	873
BspPI	GGATC	4 cut(s)	66, 240, 305, 554
BspT104I	TTCGAA	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	3 cut(s)	674, 767, 875
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	534, 628
BssMI	GATC	5 cut(s)	58, 232, 297, 397, 559
BssNAI	GTATAC	1 cut(s)	745
BssSI	CACGAG	1 cut(s)	76
BssT1I	CCWWGG	2 cut(s)	534, 628
Bst1107I	GTATAC	1 cut(s)	745
Bst2BI	CACGAG	1 cut(s)	76
Bst4CI	ACNGT	2 cut(s)	14, 508
Bst6I	CTCTTC	2 cut(s)	137, 918
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	25, 375
BstDEI	CTNAG	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	442, 745, 781
BstFNI	CGCG	2 cut(s)	33, 527
BstHHI	GCGC	1 cut(s)	607
BstKTI	GATC	5 cut(s)	61, 235, 300, 400, 562
BstMBI	GATC	5 cut(s)	58, 232, 297, 397, 559
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	2 cut(s)	33, 527
BstV1I	GCAGC	1 cut(s)	668
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	58, 297
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	2 cut(s)	58, 297
BstZ17I	GTATAC	1 cut(s)	745
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	27, 412, 539
BtsCI	GGATG	3 cut(s)	442, 745, 781
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	2 cut(s)	596, 757
Cac8I	GCNNGC	2 cut(s)	25, 375
CaiI	CAGNNNCTG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	607
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	872
CseI	GACGC	2 cut(s)	39, 516
Csp6I	GTAC	4 cut(s)	5, 18, 614, 803
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	4 cut(s)	5, 18, 614, 803
DdeI	CTNAG	1 cut(s)	580
DpnI	GATC	5 cut(s)	60, 234, 299, 399, 561
DpnII	GATC	5 cut(s)	58, 232, 297, 397, 559
EaeI	YGGCCR	2 cut(s)	25, 410
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	137, 918
EarI	CTCTTC	2 cut(s)	137, 918
EclXI	CGGCCG	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	534, 628
Eco147I	AGGCCT	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	872
Eco52I	CGGCCG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	2 cut(s)	534, 628
EcoT22I	ATGCAT	1 cut(s)	934
ErhI	CCWWGG	2 cut(s)	534, 628
FaeI	CATG	1 cut(s)	707
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	885
FatI	CATG	1 cut(s)	703
FauNDI	CATATG	2 cut(s)	205, 934
FblI	GTMKAC	2 cut(s)	70, 744
Fnu4HI	GCNGC	2 cut(s)	410, 657
FokI	GGATG	3 cut(s)	449, 752, 788
Fsp4HI	GCNGC	2 cut(s)	410, 657
GlaI	GCGC	1 cut(s)	606
GluI	GCNGC	2 cut(s)	410, 657
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	27, 412, 539
HapII	CCGG	4 cut(s)	24, 56, 138, 230
HgaI	GACGC	2 cut(s)	39, 516
HhaI	GCGC	1 cut(s)	607
Hin1II	CATG	1 cut(s)	707
Hin6I	GCGC	1 cut(s)	605
HinP1I	GCGC	1 cut(s)	605
HincII	GTYRAC	2 cut(s)	71, 472
HindII	GTYRAC	2 cut(s)	71, 472
HinfI	GANTC	3 cut(s)	72, 449, 710
HpaII	CCGG	4 cut(s)	24, 56, 138, 230
HphI	GGTGA	3 cut(s)	102, 617, 887
Hpy166II	GTNNAC	5 cut(s)	71, 83, 472, 648, 745
Hpy188I	TCNGA	4 cut(s)	220, 402, 454, 885
Hpy188III	TCNNGA	5 cut(s)	56, 76, 176, 301, 428
Hpy8I	GTNNAC	5 cut(s)	71, 83, 472, 648, 745
Hpy99I	CGWCG	2 cut(s)	33, 72
HpyAV	CCTTC	6 cut(s)	35, 526, 590, 704, 812, 862
HpyCH4III	ACNGT	2 cut(s)	14, 508
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	5 cut(s)	248, 314, 554, 656, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	580
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	1 cut(s)	707
HspAI	GCGC	1 cut(s)	605
Kpn2I	TCCGGA	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	58, 232, 297, 397, 559
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	3 cut(s)	631, 643, 919
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	5 cut(s)	108, 391, 479, 502, 752
MalI	GATC	5 cut(s)	60, 234, 299, 399, 561
MboI	GATC	5 cut(s)	58, 232, 297, 397, 559
MboII	GAAGA	6 cut(s)	154, 221, 458, 522, 705, 905
MflI	RGATCY	2 cut(s)	58, 297
MluCI	AATT	6 cut(s)	147, 212, 304, 349, 902, 920
MluI	ACGCGT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	31, 188, 659, 730, 766, 921
Mph1103I	ATGCAT	1 cut(s)	934
MroI	TCCGGA	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	2 cut(s)	150, 807
MslI	CAYNNNNRTG	1 cut(s)	418
MspI	CCGG	4 cut(s)	24, 56, 138, 230
MspR9I	CCNGG	1 cut(s)	139
MvnI	CGCG	2 cut(s)	33, 527
MwoI	GCNNNNNNNGC	1 cut(s)	379
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	139
NdeI	CATATG	2 cut(s)	205, 934
NdeII	GATC	5 cut(s)	58, 232, 297, 397, 559
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	4 cut(s)	108, 479, 502, 752
NsiI	ATGCAT	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	539
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	449, 710
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	411, 658
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	1 cut(s)	872
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	58, 297
RsaI	GTAC	4 cut(s)	6, 19, 615, 804
RsaNI	GTAC	4 cut(s)	5, 18, 614, 803
RseI	CAYNNNNRTG	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	150, 807
SatI	GCNGC	2 cut(s)	410, 657
Sau3AI	GATC	5 cut(s)	58, 232, 297, 397, 559
Sau96I	GGNCC	1 cut(s)	872
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	631, 643, 919
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	1 cut(s)	872
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	428, 617
SmoI	CTYRAG	2 cut(s)	428, 617
Sse9I	AATT	6 cut(s)	147, 212, 304, 349, 902, 920
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	4 cut(s)	49, 335, 409, 525
StuI	AGGCCT	1 cut(s)	539
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	534, 628
TaaI	ACNGT	2 cut(s)	14, 508
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	5 cut(s)	70, 429, 444, 716, 927
TasI	AATT	6 cut(s)	147, 212, 304, 349, 902, 920
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	449, 710
Tru1I	TTAA	2 cut(s)	150, 807
Tru9I	TTAA	2 cut(s)	150, 807
TscAI	CASTG	2 cut(s)	596, 757
TseFI	GTSAC	4 cut(s)	108, 479, 502, 752
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	4 cut(s)	108, 479, 502, 752
TspDTI	ATGAA	3 cut(s)	85, 222, 869
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	596, 757
VpaK11BI	GGWCC	1 cut(s)	872
XapI	RAATTY	2 cut(s)	304, 349
XhoI	CTCGAG	1 cut(s)	428
XmiI	GTMKAC	2 cut(s)	70, 744
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.