Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4549047 .. 4550170

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG030400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAGAATTTATCGGAAGTTTCACCGGATCATCGATTTATTGCTTATACAATGTATGATAAAGACAATGAATTTTTTAGGTTGTCTGTTAGGAACTTGAATTCTGGTGCATTGTGTAGTAAGCCTCAAGTGAAGCGTGTTTCGAATTTGGCTTGGTCCAAAGACGGGCAGGCATTGCTTTATGTTGTTACCGATCAGAACAAGAGGCCATTTAGGTGTTTTTTCGAGCAGGATGTTTTTGAAGAATCGGATAATAATGTGTTTGTCAACATTAGACACACGAAAGATTTCCGGTTTGTGACTGTAAATACCTTCTCTACCACATCTTCCAAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCCTGTGGATTCTTCGAGCAGTCCAAGAATATGGGAGTTTGTCATTCCGTGCTTTAGATGTGCTCTACAGCTCATTTGTCTTTTCTGTTCCTTTATCAGTATATGGCTCTGAAATTTATGCTGTGTTTATTAGATTTTCATATCAAGATGTATTCGTCAGTGACCCAGACTGGGTTTTTGAGGATGTGGATTTCAGTTATACACACTTGGTACTTAATATAAGGGAAGGGCGAAACTTTAGACTTTGCTCTGTTGCTTTACCTTTGCCTGATGGGAAGATAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

222

Amino Acids

25.68

Weight (kDa)

6.31

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	5 cut(s)	7, 71, 100, 145, 495
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	3 cut(s)	165, 347, 553
AgsI	TTSAA	2 cut(s)	100, 242
AluBI	AGCT	1 cut(s)	453
AluI	AGCT	1 cut(s)	453
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	5 cut(s)	7, 71, 100, 145, 495
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
Asp700I	GAANNNNTTC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	15
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	448
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	562
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	34
BsaWI	WCCGGW	2 cut(s)	25, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 347, 553
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	173
BseCI	ATCGAT	1 cut(s)	34
BseGI	GGATG	2 cut(s)	238, 571
BseLI	CCNNNNNNNGG	3 cut(s)	165, 347, 553
BseMI	GCAATG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	324
BshFI	GGCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	26, 292
BslI	CCNNNNNNNGG	3 cut(s)	165, 347, 553
BsnI	GGCC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	28, 193
BspANI	GGCC	1 cut(s)	208
BspDI	ATCGAT	1 cut(s)	34
BspPI	GGATC	1 cut(s)	36
BspT104I	TTCGAA	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	557
BssMI	GATC	2 cut(s)	28, 193
Bst4CI	ACNGT	1 cut(s)	304
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	238, 571
BstKTI	GATC	2 cut(s)	31, 196
BstMBI	GATC	2 cut(s)	28, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	413
Bsu15I	ATCGAT	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	208
BsuTUI	ATCGAT	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	238, 571
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	593
CviJI	RGCY	5 cut(s)	124, 152, 208, 453, 489
CviKI_1	RGCY	5 cut(s)	124, 152, 208, 453, 489
CviQI	GTAC	1 cut(s)	593
DpnI	GATC	2 cut(s)	30, 195
DpnII	GATC	2 cut(s)	28, 193
Eco47I	GGWCC	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	245, 578
Fsp4HI	GCNGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	2 cut(s)	26, 292
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	245, 391
HpaII	CCGG	2 cut(s)	26, 292
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	4 cut(s)	16, 198, 250, 493
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	3 cut(s)	322, 385, 602
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	28, 193
LpnPI	CCDG	9 cut(s)	39, 90, 155, 215, 305, 398, 538, 561, 663
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	187, 298, 542
MalI	GATC	2 cut(s)	30, 195
MboI	GATC	2 cut(s)	28, 193
MboII	GAAGA	4 cut(s)	16, 254, 318, 386
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	5 cut(s)	7, 71, 100, 145, 495
MnlI	CCTC	4 cut(s)	135, 198, 340, 556
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	2 cut(s)	597, 667
MslI	CAYNNNNRTG	1 cut(s)	214
MspI	CCGG	2 cut(s)	26, 292
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	2 cut(s)	28, 193
NmuCI	GTSAC	2 cut(s)	298, 542
NspV	TTCGAA	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	245, 391
PkrI	GCNGC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	156
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	597, 667
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	28, 193
Sau96I	GGNCC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	6 cut(s)	83, 218, 314, 455, 646, 667
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	5 cut(s)	7, 71, 100, 145, 495
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	4 cut(s)	34, 143, 225, 397
TasI	AATT	5 cut(s)	7, 71, 100, 145, 495
TfiI	GAWTC	2 cut(s)	245, 391
Tru1I	TTAA	2 cut(s)	597, 667
Tru9I	TTAA	2 cut(s)	597, 667
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	298, 542
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	298, 542
TspDTI	ATGAA	3 cut(s)	17, 84, 510
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	5 cut(s)	7, 71, 100, 145, 495
XmnI	GAANNNNTTC	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.