Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

62337049 .. 62340028

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGGTTCAGTTTCAGATCCGGTGACGGCAGGGGAGAAAGGGGGCTGTTTTGGGGGTTTTTAGTCCCGATTCGGTATTCGGTTGTTCGGATCGGGCAGTCTGGGCGGCCATTGATTAGATCGAATATCTTTTTTGTTCTGGATCTCGATCTATGTCGACAACTTGTCCCATTGGTGTTTGCGTCAGGCGGAGAGGCTGCGGATCTACGGTGGTCCATTGAAGGTGATGTCGGCTCTTTGTTCCGGGATCAGAAGGCTAGCAGCAAAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCCTGTGGATTCTTCGAGCAGTCCAAGAATATGGGGGAGTTTGTCATTCCGTGCTTTAGATGTGCTCTATAGCTCATTTGTCTTTTCTGTTCCTTTATCAGTATATGGCTCTGAAATTGATACTGTGTTTATTAGATTTTCATATCAAGATGTATTCGTCAGTGACCAAGACTGGGTTTTTGAGGATGTGGATTTCAGTCATACACACTTGGTACTTAATATAAGGGAAGGGCGAAACTTTAGACTTTGTTCTATTGCTTTACCTTTGCCTGCTGGGAAGGTAGTTAACAATACCAACTTCTTTAGGGGACCAGTTCATCTAAAAGAGCTTTACCCACAATTCTTGCCTCTTCCAAAATTGTTCGATGCATATGTAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

234

Amino Acids

26.2

Weight (kDa)

7.8

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	3 cut(s)	106, 189, 200
AclWI	GGATC	5 cut(s)	12, 98, 150, 210, 255
AcoI	YGGCCR	1 cut(s)	107
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	282, 490
AgsI	TTSAA	1 cut(s)	221
AhdI	GACNNNNNGTC	1 cut(s)	164
AluBI	AGCT	2 cut(s)	390, 646
AluI	AGCT	2 cut(s)	390, 646
Alw21I	GWGCWC	1 cut(s)	384
AlwI	GGATC	5 cut(s)	12, 98, 150, 210, 255
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	197, 261, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AspS9I	GGNCC	2 cut(s)	213, 626
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	35, 236
AsuNHI	GCTAGC	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	213, 626
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	184, 259, 273
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	245
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	385
BisI	GCNGC	4 cut(s)	107, 198, 262, 273
BlsI	GCNGC	4 cut(s)	108, 199, 263, 274
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	2 cut(s)	213, 626
BmeRI	GACNNNNNGTC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	213, 626
BmiI	GGNNCC	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	259, 673
BmtI	GCTAGC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 490
Bse1I	ACTGG	2 cut(s)	494, 629
Bse8I	GATNNNNATC	1 cut(s)	147
BseGI	GGATG	1 cut(s)	508
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	282, 490
BseNI	ACTGG	2 cut(s)	494, 629
BseXI	GCAGC	3 cut(s)	184, 259, 273
BseYI	CCCAGC	1 cut(s)	590
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	21, 244
BslFI	GGGAC	3 cut(s)	50, 152, 639
BslI	CCNNNNNNNGG	2 cut(s)	282, 490
BsmFI	GGGAC	3 cut(s)	50, 152, 639
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
BspACI	CCGC	3 cut(s)	106, 189, 200
BspANI	GGCC	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	627
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	5 cut(s)	12, 98, 150, 210, 255
BsrI	ACTGG	2 cut(s)	494, 629
BssMI	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
Bst4CI	ACNGT	2 cut(s)	210, 442
Bst6I	CTCTTC	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	259, 588
BstF5I	GGATG	1 cut(s)	508
BstKTI	GATC	7 cut(s)	20, 93, 122, 145, 151, 205, 250
BstMBI	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	385
BstV1I	GCAGC	3 cut(s)	184, 259, 273
BstX2I	RGATCY	3 cut(s)	17, 142, 202
BstXI	CCANNNNNNTGG	1 cut(s)	348
BstYI	RGATCY	3 cut(s)	17, 142, 202
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	259, 588
Cfr13I	GGNCC	2 cut(s)	213, 626
CseI	GACGC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	530
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviJI	RGCY	8 cut(s)	46, 109, 197, 234, 257, 390, 426, 646
CviKI_1	RGCY	8 cut(s)	46, 109, 197, 234, 257, 390, 426, 646
CviQI	GTAC	1 cut(s)	530
DpnI	GATC	7 cut(s)	19, 92, 121, 144, 150, 204, 249
DpnII	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
DriI	GACNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	672
Eam1105I	GACNNNNNGTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	672
EciI	GGCGGA	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	213, 626
EcoT22I	ATGCAT	1 cut(s)	688
FaqI	GGGAC	3 cut(s)	50, 152, 639
FauNDI	CATATG	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	107, 198, 262, 273
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	4 cut(s)	107, 198, 262, 273
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	4 cut(s)	107, 198, 262, 273
GsaI	CCCAGC	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	21, 244
HgaI	GACGC	1 cut(s)	171
HincII	GTYRAC	2 cut(s)	158, 604
HindII	GTYRAC	2 cut(s)	158, 604
HinfI	GANTC	2 cut(s)	70, 326
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	2 cut(s)	21, 244
HphI	GGTGA	2 cut(s)	35, 236
Hpy166II	GTNNAC	2 cut(s)	158, 604
Hpy188I	TCNGA	4 cut(s)	17, 90, 252, 430
Hpy188III	TCNNGA	4 cut(s)	67, 140, 146, 464
Hpy8I	GTNNAC	2 cut(s)	158, 604
HpyAV	CCTTC	5 cut(s)	215, 247, 320, 539, 589
HpyCH4III	ACNGT	2 cut(s)	210, 442
HpyCH4V	TGCA	1 cut(s)	686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
Lsp1109I	GCAGC	3 cut(s)	184, 259, 273
LweI	GCATC	2 cut(s)	259, 673
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	23, 479
MalI	GATC	7 cut(s)	19, 92, 121, 144, 150, 204, 249
MboI	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
MboII	GAAGA	2 cut(s)	321, 659
MflI	RGATCY	3 cut(s)	17, 142, 202
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	432, 656, 674
MnlI	CCTC	4 cut(s)	187, 275, 493, 675
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	2 cut(s)	534, 603
MspI	CCGG	2 cut(s)	21, 244
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
NheI	GCTAGC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	627
NmuCI	GTSAC	2 cut(s)	23, 479
NsiI	ATGCAT	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	70, 326
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	4 cut(s)	108, 199, 263, 274
PspFI	CCCAGC	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	627
PspPI	GGNCC	2 cut(s)	213, 626
PsuI	RGATCY	3 cut(s)	17, 142, 202
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SalI	GTCGAC	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	534, 603
SatI	GCNGC	4 cut(s)	107, 198, 262, 273
Sau3AI	GATC	7 cut(s)	17, 90, 119, 142, 148, 202, 247
Sau96I	GGNCC	2 cut(s)	213, 626
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	5 cut(s)	226, 392, 583, 600, 648
SfaNI	GCATC	2 cut(s)	259, 673
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	2 cut(s)	213, 626
Sse9I	AATT	3 cut(s)	432, 656, 674
SsiI	CCGC	3 cut(s)	106, 189, 200
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	210, 442
TaqI	TCGA	5 cut(s)	122, 147, 157, 332, 681
TasI	AATT	3 cut(s)	432, 656, 674
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	2 cut(s)	70, 326
Tru1I	TTAA	2 cut(s)	534, 603
Tru9I	TTAA	2 cut(s)	534, 603
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	2 cut(s)	23, 479
TseI	GCWGC	3 cut(s)	197, 261, 272
Tsp45I	GTSAC	2 cut(s)	23, 479
TspDTI	ATGAA	2 cut(s)	447, 623
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	2 cut(s)	213, 626
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.