Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Reverse (-)

7536531 .. 7537181

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG039700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTACGGAACGGTTGTACTGCCGGCCGACGCGTGGAGGAAGGTAAGCGGTTTCCGGATCTGTGTCGTCGACTCACGAGTTTACACAACGAGTTCATTTCTCATAAGTCACCTTATGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTAAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATACATATGAAGAATTATCGGAAGTTTCGCCGGATCATCGGTTTATTGCATATACAATGTATGATAAAGACAAGAACTTGTTTAGGTTGTCTGTTAGGATCTTGAATTCTGGTGCATTGTGTAGTAAGCCACAAGCGGAGCGTGTTTCAAATTTGGCTTTCGCCAAAGATGGGCAGGCATTGCTTTATGTTGTTACCGATCAGAACAAGCGGCCATATAGGTCGGCAATGTGTGAAGTTTACAATGCATGTTTGGTTTTTTTGGTTTATGATGATGTAATTGTGGTAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

163

Amino Acids

18.76

Weight (kDa)

8.95

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AccII	CGCG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	55
AciI	CCGC	3 cut(s)	49, 335, 409
AclWI	GGATC	3 cut(s)	66, 240, 305
AcoI	YGGCCR	2 cut(s)	25, 410
AcsI	RAATTY	2 cut(s)	304, 349
AfaI	GTAC	2 cut(s)	6, 19
AfiI	CCNNNNNNNGG	3 cut(s)	34, 119, 369
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	304, 348
AluBI	AGCT	2 cut(s)	160, 182
AluI	AGCT	2 cut(s)	160, 182
AlwI	GGATC	3 cut(s)	66, 240, 305
AlwNI	CAGNNNCTG	1 cut(s)	160
Aor13HI	TCCGGA	1 cut(s)	55
AoxI	GGCC	2 cut(s)	25, 410
ApoI	RAATTY	2 cut(s)	304, 349
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	102
BauI	CACGAG	1 cut(s)	76
BccI	CCATC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	139
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 119, 369
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	377, 432
Bse8I	GATNNNNATC	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	55
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	34, 119, 369
BseMI	GCAATG	2 cut(s)	377, 432
BseX3I	CGGCCG	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	27, 412
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	4 cut(s)	24, 56, 138, 230
BslI	CCNNNNNNNGG	3 cut(s)	34, 119, 369
BsnI	GGCC	2 cut(s)	27, 412
Bsp13I	TCCGGA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	58, 232, 297, 397
BspACI	CCGC	3 cut(s)	49, 335, 409
BspANI	GGCC	2 cut(s)	27, 412
BspEI	TCCGGA	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	66, 240, 305
BsrDI	GCAATG	2 cut(s)	377, 432
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssMI	GATC	4 cut(s)	58, 232, 297, 397
BssSI	CACGAG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	25, 375
BstDEI	CTNAG	1 cut(s)	489
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	4 cut(s)	61, 235, 300, 400
BstMBI	GATC	4 cut(s)	58, 232, 297, 397
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	137
BstUI	CGCG	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	58, 297
BstYI	RGATCY	2 cut(s)	58, 297
BstZI	CGGCCG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	27, 412
Cac8I	GCNNGC	2 cut(s)	25, 375
CaiI	CAGNNNCTG	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	23
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	5, 18
CviAII	CATG	1 cut(s)	447
CviJI	RGCY	6 cut(s)	27, 160, 182, 328, 356, 412
CviKI_1	RGCY	6 cut(s)	27, 160, 182, 328, 356, 412
CviQI	GTAC	2 cut(s)	5, 18
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	4 cut(s)	60, 234, 299, 399
DpnII	GATC	4 cut(s)	58, 232, 297, 397
EaeI	YGGCCR	2 cut(s)	25, 410
EagI	CGGCCG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	1 cut(s)	450
FatI	CATG	1 cut(s)	446
FauNDI	CATATG	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	27, 412
HapII	CCGG	4 cut(s)	24, 56, 138, 230
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	450
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	4 cut(s)	24, 56, 138, 230
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	71, 83, 439
Hpy188I	TCNGA	2 cut(s)	220, 402
Hpy188III	TCNNGA	4 cut(s)	56, 76, 176, 301
Hpy8I	GTNNAC	3 cut(s)	71, 83, 439
Hpy99I	CGWCG	2 cut(s)	33, 72
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	248, 314, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	1 cut(s)	450
Kpn2I	TCCGGA	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	58, 232, 297, 397
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	7 cut(s)	37, 69, 105, 151, 243, 294, 359
MaeIII	GTNAC	3 cut(s)	108, 391, 484
MalI	GATC	4 cut(s)	60, 234, 299, 399
MboI	GATC	4 cut(s)	58, 232, 297, 397
MboII	GAAGA	2 cut(s)	154, 221
MflI	RGATCY	2 cut(s)	58, 297
MluCI	AATT	5 cut(s)	147, 212, 304, 349, 477
MluI	ACGCGT	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	2 cut(s)	31, 188
Mph1103I	ATGCAT	1 cut(s)	448
MroI	TCCGGA	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	1 cut(s)	150
MspI	CCGG	4 cut(s)	24, 56, 138, 230
MspR9I	CCNGG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	379
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	139
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	4 cut(s)	58, 232, 297, 397
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	450
NmuCI	GTSAC	1 cut(s)	108
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	1 cut(s)	450
PdiI	GCCGGC	1 cut(s)	25
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	119
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	58, 297
RsaI	GTAC	2 cut(s)	6, 19
RsaNI	GTAC	2 cut(s)	5, 18
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	4 cut(s)	58, 232, 297, 397
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	7 cut(s)	46, 115, 162, 184, 199, 287, 422
Sse9I	AATT	5 cut(s)	147, 212, 304, 349, 477
SsiI	CCGC	3 cut(s)	49, 335, 409
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	70
TasI	AATT	5 cut(s)	147, 212, 304, 349, 477
TatI	WGTACW	1 cut(s)	17
TauI	GCSGC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	108
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	85, 222
TspGWI	ACGGA	1 cut(s)	22
XapI	RAATTY	2 cut(s)	304, 349
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.