Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4541173 .. 4542953

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG030000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCCTCCCGCTTATCCTTCGACCTCTCCACTCCTCCCCTCAAATTCGGACCATGGTACGGAACGGTAATAATGGTCTCAATTTCGTCATTTTTTAACGTTGTTGACAAAGTTTGGTGCTTTTGCGAAGGTTGTACTACCGGCCGACGCGTGGAGGAAGGTAAGCGGTTTCCGGATCTGTGTCGTCGACGCACGAGTTTACACGACGAGTTCATTTCTCATAAGTCACCTTATGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTAAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATGCATATGAAGAATTATCGGAAGTTTCGCCGGATCATCGGTTTATTGCATATACAATGTATGATAAAGACAAGAACTTGTTTAGGTTGTCTGTTAGGATCTTGAATTCTGGTGCATTGTGTAGTAAGCCTCAAGTGAAGTGTTTTCTCGAGCAGGATGTTTTCGAAGAATCGGATAATAATGTGTATGTCAACATTAGACACACGAAAGATTTTCGGTTTGTGACTGTAAATACCTTCTCTACCGCGTCTTCCAAGGTCTTTTTGATAAATGCAGTTGATCCATTGTCGGGGTTGAACTTAGTTTGGCAGTGTGAAGGTATAGCGCATTGGGTACTTGAGCATCACCAAGGATATCTTTTTCTGTTTACTGATGCAGCAAAAGGAGGCCAGCCAGTTGATAACCATTATCTCCTTCATAGTCATGTGGATTCTTCGAGCTGTCCAAGAATATGGGAGGATGTATACGTCAGTGACCCAGACTGGTTTTTTGAGGATGTGGATTTCTGTCATATACACTTGGTACTTAATATAAAGGAAGGGCGAAACTTTAGTCTTTGTTCAGTTGCTTTACATTTGCCTGATGGGAAGGGATCAGTTCATCTGAAAGTGCTTCACACACAATTCTTGCATCTTCCAAAATTGTTCAATGCATATGTAGGAAGACGACCAGATCCGAAATTGCATTATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

336

Amino Acids

38.73

Weight (kDa)

6.78

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	187, 780
AccII	CGCG	2 cut(s)	150, 563
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	3 cut(s)	10, 166, 561
AclI	AACGTT	1 cut(s)	99
AclWI	GGATC	6 cut(s)	183, 357, 422, 590, 916, 983
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	44, 421
AfaI	GTAC	4 cut(s)	59, 136, 651, 840
AfiI	CCNNNNNNNGG	4 cut(s)	59, 151, 236, 605
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	421, 613, 964
AluBI	AGCT	3 cut(s)	277, 299, 756
AluI	AGCT	3 cut(s)	277, 299, 756
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	6 cut(s)	183, 357, 422, 590, 916, 983
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	3 cut(s)	3, 142, 703
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	2 cut(s)	44, 421
ArsI	GACNNNNNNTTYG	4 cut(s)	788, 820, 853, 885
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	219, 653
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	558, 985
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	1 cut(s)	893
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	693
BlsI	GCNGC	1 cut(s)	694
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	3 cut(s)	667, 679, 955
BpiI	GAAGAC	2 cut(s)	558, 985
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	432, 674
BpuMI	CCSGG	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	53, 570, 664
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 151, 236, 605
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	710, 803
Bse8I	GATNNNNATC	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	53, 570, 664
BseGI	GGATG	3 cut(s)	478, 781, 817
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	59, 151, 236, 605
BseNI	ACTGG	2 cut(s)	710, 803
BseRI	GAGGAG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	704
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	2 cut(s)	150, 563
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	3 cut(s)	5, 144, 705
BsiEI	CGRYCG	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	4 cut(s)	141, 173, 255, 347
BslI	CCNNNNNNNGG	4 cut(s)	59, 151, 236, 605
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	5, 144, 705
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	464
Bsp119I	TTCGAA	1 cut(s)	480
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	3 cut(s)	10, 166, 561
BspANI	GGCC	3 cut(s)	5, 144, 705
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	150, 563
BspPI	GGATC	6 cut(s)	183, 357, 422, 590, 916, 983
BspT104I	TTCGAA	1 cut(s)	480
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	710, 803
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	3 cut(s)	53, 570, 664
BssMI	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
BssNAI	GTATAC	1 cut(s)	781
BssSI	CACGAG	1 cut(s)	193
BssT1I	CCWWGG	3 cut(s)	53, 570, 664
Bst1107I	GTATAC	1 cut(s)	781
Bst2BI	CACGAG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	67, 544
Bst6I	CTCTTC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	707
BstDEI	CTNAG	1 cut(s)	616
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	478, 781, 817
BstFNI	CGCG	2 cut(s)	150, 563
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	6 cut(s)	178, 352, 417, 598, 911, 991
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
BstMCI	CGRYCG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	254
BstUI	CGCG	2 cut(s)	150, 563
BstV1I	GCAGC	1 cut(s)	704
BstV2I	GAAGAC	2 cut(s)	558, 985
BstX2I	RGATCY	3 cut(s)	175, 414, 988
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	3 cut(s)	175, 414, 988
BstZ17I	GTATAC	1 cut(s)	781
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	5, 144, 705
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	478, 781, 817
BtsI	GCAGTG	1 cut(s)	632
BtsIMutI	CAGTG	2 cut(s)	632, 793
Cac8I	GCNNGC	1 cut(s)	707
CaiI	CAGNNNCTG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	3 cut(s)	156, 198, 552
Csp6I	GTAC	4 cut(s)	58, 135, 650, 839
CviAII	CATG	2 cut(s)	54, 740
CviJI	RGCY	8 cut(s)	5, 144, 277, 299, 445, 705, 709, 756
CviKI_1	RGCY	8 cut(s)	5, 144, 277, 299, 445, 705, 709, 756
CviQI	GTAC	4 cut(s)	58, 135, 650, 839
DdeI	CTNAG	1 cut(s)	616
DpnI	GATC	6 cut(s)	177, 351, 416, 597, 910, 990
DpnII	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	3 cut(s)	53, 570, 664
Eco31I	GGTCTC	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	50
Eco52I	CGGCCG	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	421
EcoRV	GATATC	1 cut(s)	671
EcoT14I	CCWWGG	3 cut(s)	53, 570, 664
EcoT22I	ATGCAT	2 cut(s)	322, 970
ErhI	CCWWGG	3 cut(s)	53, 570, 664
FaeI	CATG	2 cut(s)	57, 743
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FatI	CATG	2 cut(s)	53, 739
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	2 cut(s)	322, 970
FblI	GTMKAC	2 cut(s)	187, 780
Fnu4HI	GCNGC	1 cut(s)	693
FokI	GGATG	3 cut(s)	485, 788, 824
Fsp4HI	GCNGC	1 cut(s)	693
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	1 cut(s)	693
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	5, 144, 705
HapII	CCGG	4 cut(s)	141, 173, 255, 347
HgaI	GACGC	3 cut(s)	156, 198, 552
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	2 cut(s)	57, 743
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	3 cut(s)	106, 188, 508
HindII	GTYRAC	3 cut(s)	106, 188, 508
HinfI	GANTC	2 cut(s)	485, 746
HpaII	CCGG	4 cut(s)	141, 173, 255, 347
HphI	GGTGA	2 cut(s)	219, 653
Hpy166II	GTNNAC	6 cut(s)	106, 188, 200, 508, 684, 781
Hpy188I	TCNGA	5 cut(s)	50, 337, 490, 921, 993
Hpy188III	TCNNGA	4 cut(s)	173, 293, 418, 464
Hpy8I	GTNNAC	6 cut(s)	106, 188, 200, 508, 684, 781
Hpy99I	CGWCG	4 cut(s)	150, 189, 192, 209
HpyAV	CCTTC	8 cut(s)	28, 122, 152, 562, 626, 740, 848, 898
HpyCH4III	ACNGT	2 cut(s)	67, 544
HpyCH4IV	ACGT	2 cut(s)	99, 783
HpyCH4V	TGCA	8 cut(s)	320, 365, 431, 590, 692, 946, 968, 1000
HpyF3I	CTNAG	1 cut(s)	616
HpySE526I	ACGT	2 cut(s)	99, 783
Hsp92II	CATG	2 cut(s)	57, 743
HspAI	GCGC	1 cut(s)	641
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
Lsp1109I	GCAGC	1 cut(s)	704
LweI	GCATC	3 cut(s)	667, 679, 955
MaeII	ACGT	2 cut(s)	99, 783
MaeIII	GTNAC	3 cut(s)	225, 538, 788
MalI	GATC	6 cut(s)	177, 351, 416, 597, 910, 990
MboI	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
MboII	GAAGA	7 cut(s)	271, 338, 494, 558, 741, 941, 990
MflI	RGATCY	3 cut(s)	175, 414, 988
MluCI	AATT	8 cut(s)	44, 81, 264, 329, 421, 938, 956, 995
MluI	ACGCGT	1 cut(s)	148
Mph1103I	ATGCAT	2 cut(s)	322, 970
MroI	TCCGGA	1 cut(s)	172
MseI	TTAA	3 cut(s)	96, 267, 843
MslI	CAYNNNNRTG	1 cut(s)	738
MspI	CCGG	4 cut(s)	141, 173, 255, 347
MspR9I	CCNGG	1 cut(s)	256
MvnI	CGCG	2 cut(s)	150, 563
NciI	CCSGG	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	53
NdeI	CATATG	2 cut(s)	322, 970
NdeII	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
NlaIII	CATG	2 cut(s)	57, 743
NmuCI	GTSAC	3 cut(s)	225, 538, 788
NsiI	ATGCAT	2 cut(s)	322, 970
NspV	TTCGAA	1 cut(s)	480
PaeR7I	CTCGAG	1 cut(s)	464
PfeI	GAWTC	2 cut(s)	485, 746
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	694
Psp1406I	AACGTT	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	3 cut(s)	175, 414, 988
RsaI	GTAC	4 cut(s)	59, 136, 651, 840
RsaNI	GTAC	4 cut(s)	58, 135, 650, 839
RseI	CAYNNNNRTG	1 cut(s)	738
SalI	GTCGAC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	96, 267, 843
SatI	GCNGC	1 cut(s)	693
Sau3AI	GATC	6 cut(s)	175, 349, 414, 595, 908, 988
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	256
SfaNI	GCATC	3 cut(s)	667, 679, 955
Sfr274I	CTCGAG	1 cut(s)	464
SfuI	TTCGAA	1 cut(s)	480
SgrDI	CGTCGACG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	3 cut(s)	447, 464, 653
SmoI	CTYRAG	3 cut(s)	447, 464, 653
Sse9I	AATT	8 cut(s)	44, 81, 264, 329, 421, 938, 956, 995
SsiI	CCGC	3 cut(s)	10, 166, 561
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	3 cut(s)	53, 570, 664
TaaI	ACNGT	2 cut(s)	67, 544
TaiI	ACGT	2 cut(s)	102, 786
TaqI	TCGA	5 cut(s)	21, 187, 465, 480, 752
TasI	AATT	8 cut(s)	44, 81, 264, 329, 421, 938, 956, 995
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	485, 746
Tru1I	TTAA	3 cut(s)	96, 267, 843
Tru9I	TTAA	3 cut(s)	96, 267, 843
TscAI	CASTG	2 cut(s)	632, 793
TseFI	GTSAC	3 cut(s)	225, 538, 788
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	3 cut(s)	225, 538, 788
TspDTI	ATGAA	4 cut(s)	202, 339, 722, 905
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	632, 793
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	44, 421
XhoI	CTCGAG	1 cut(s)	464
XmiI	GTMKAC	2 cut(s)	187, 780
Zsp2I	ATGCAT	2 cut(s)	322, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.