Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4548343 .. 4548612

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG030300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCTCCACCTGGTAAAACCCCTCCGCCCCCATCTCCGCCATCTACGGTTGGCACACTTTAAGGCCCCAAAGCCGCCGGAATCCCCTCCGAAGCCACCAAACCCTCACCAGAAGCCCGAAACCTTCACCCTCCACAACCACACATGGCAGGACCCCAACAGCTGGATGTCCAAGCTCAACGACAAGGTCGCCATGCGACACATGGACATGTACATGGAACAGGAAGACAAATACACCGAAGCTGTCATGTACGGCTCCGATCGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

89

Amino Acids

10.62

Weight (kDa)

9.17

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	3 cut(s)	25, 37, 74
AfaI	GTAC	2 cut(s)	212, 251
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	3 cut(s)	162, 175, 242
AluI	AGCT	3 cut(s)	162, 175, 242
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	264
AspS9I	GGNCC	2 cut(s)	64, 151
AsuHPI	GGTGA	2 cut(s)	98, 118
AvaII	GGWCC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	2 cut(s)	39, 48
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	268
BisI	GCNGC	2 cut(s)	74, 265
BlsI	GCNGC	2 cut(s)	75, 266
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	64, 151
BmiI	GGNNCC	3 cut(s)	66, 153, 256
BmrFI	CCNGG	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	162
BsnI	GGCC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	3 cut(s)	25, 37, 74
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	66, 153, 256
BsrGI	TGTACA	1 cut(s)	210
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	251
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	64, 151
CsiI	ACCWGGT	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	211, 250
CviAII	CATG	6 cut(s)	144, 193, 202, 208, 214, 247
CviJI	RGCY	8 cut(s)	65, 73, 94, 115, 162, 175, 242, 255
CviKI_1	RGCY	8 cut(s)	65, 73, 94, 115, 162, 175, 242, 255
CviQI	GTAC	2 cut(s)	211, 250
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EciI	GGCGGA	2 cut(s)	14, 26
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	64, 151
EcoRII	CCWGG	1 cut(s)	9
FaeI	CATG	6 cut(s)	147, 196, 205, 211, 217, 250
FaiI	YATR	6 cut(s)	145, 194, 203, 209, 215, 248
FatI	CATG	6 cut(s)	143, 192, 201, 207, 213, 246
Fnu4HI	GCNGC	2 cut(s)	74, 265
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	74, 265
FspBI	CTAG	1 cut(s)	268
GluI	GCNGC	2 cut(s)	74, 265
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	6 cut(s)	147, 196, 205, 211, 217, 250
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	98, 118
Hpy188I	TCNGA	2 cut(s)	90, 259
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
Hsp92II	CATG	6 cut(s)	147, 196, 205, 211, 217, 250
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	9, 260
LpnPI	CCDG	6 cut(s)	23, 90, 122, 134, 148, 206
Lsp1109I	GCAGC	1 cut(s)	251
MabI	ACCWGGT	1 cut(s)	9
MaeI	CTAG	1 cut(s)	268
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	236
MnlI	CCTC	4 cut(s)	32, 96, 114, 140
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	206, 212
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	261
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	6 cut(s)	147, 196, 205, 211, 217, 250
NlaIV	GGNNCC	3 cut(s)	66, 153, 256
NspI	RCATGY	1 cut(s)	211
PciI	ACATGT	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	80
PflFI	GACNNNGTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	75, 266
Ple19I	CGATCG	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	151
PscI	ACATGT	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	66, 153, 256
PspPI	GGNCC	2 cut(s)	64, 151
PspPPI	RGGWCCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	185
PvuI	CGATCG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	212, 251
RsaNI	GTAC	2 cut(s)	211, 250
RseI	CAYNNNNRTG	2 cut(s)	206, 212
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	74, 265
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	64, 151
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	6 cut(s)	12, 125, 164, 177, 189, 244
SexAI	ACCWGGT	1 cut(s)	9
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	206, 212
SsiI	CCGC	3 cut(s)	25, 37, 74
SspMI	CTAG	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseI	GCWGC	1 cut(s)	264
Tth111I	GACNNNGTC	1 cut(s)	185
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	151
XceI	RCATGY	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.