Rh1DG030200

Prolyl oligopeptidase, N-terminal beta-propeller domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
4546605 .. 4547830
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG030200.1

Sequence Viewer

Length: 402 bp
ATGTATGGTAAAGACAATGACTTGTTTAGGTTGTCTGTTAGGAACTTGAATTCTGGTGCATTGTGTAGTAAGCCTCAAGCGGAGCGTGTTTCGAATTTGGCTTGGGCCAAAGATGGGCAGTCATTGCTTTATGTTGTTACCGATCAGAACAAGCGGCCATATAGGTCGGCAATGTGTGAAGTTTACAATGCATGTTTGGATATTTTTGAAGAATCGGATAATAATGTGTATGTCAACATTAGACACCCGAAAGATTTTCGGTTTGTGACTGTAAATACCTTCTCTACCGCATCTTCCAAGATGCTGCCAAAGGAGGGCAGTCAGTTGATAACCATTATCTCCTTCGTAGTCCTGTGGATTCTTCGAGCAGTCCAAGAATATGGGAGGGACCAGTTTATCTAA

Protein Analysis

133

Amino Acids

15.28

Weight (kDa)

8.46

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 80, 154, 288
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 49, 94
AfiI CCNNNNNNNGG 2 cut(s) 114, 314
AgsI TTSAA 2 cut(s) 49, 209
AoxI GGCC 2 cut(s) 105, 155
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 2 cut(s) 49, 94
AspS9I GGNCC 2 cut(s) 105, 388
AsuII TTCGAA 1 cut(s) 92
AvaII GGWCC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 107
BisI GCNGC 2 cut(s) 155, 305
BlsI GCNGC 2 cut(s) 156, 306
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 2 cut(s) 105, 388
BmiI GGNNCC 1 cut(s) 389
BmsI GCATC 2 cut(s) 291, 299
Bpu14I TTCGAA 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 314
Bse1I ACTGG 1 cut(s) 391
Bse3DI GCAATG 2 cut(s) 122, 177
BseLI CCNNNNNNNGG 2 cut(s) 114, 314
BseMI GCAATG 2 cut(s) 122, 177
BseNI ACTGG 1 cut(s) 391
BseXI GCAGC 1 cut(s) 291
BshFI GGCC 2 cut(s) 107, 157
BslI CCNNNNNNNGG 2 cut(s) 114, 314
BsnI GGCC 2 cut(s) 107, 157
Bsp119I TTCGAA 1 cut(s) 92
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 3 cut(s) 80, 154, 288
BspANI GGCC 2 cut(s) 107, 157
BspLI GGNNCC 1 cut(s) 389
BspT104I TTCGAA 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 122, 177
BsrI ACTGG 1 cut(s) 391
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 92
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 380
BsuRI GGCC 2 cut(s) 107, 157
Cfr13I GGNCC 2 cut(s) 105, 388
CviAII CATG 1 cut(s) 192
CviJI RGCY 4 cut(s) 73, 101, 107, 157
CviKI_1 RGCY 4 cut(s) 73, 101, 107, 157
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 193
FaeI CATG 1 cut(s) 195
FaiI YATR 7 cut(s) 6, 132, 160, 162, 193, 231, 381
FatI CATG 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 155, 305
Fsp4HI GCNGC 2 cut(s) 155, 305
GluI GCNGC 2 cut(s) 155, 305
HaeIII GGCC 2 cut(s) 107, 157
Hin1II CATG 1 cut(s) 195
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 212, 358
Hpy166II GTNNAC 2 cut(s) 184, 235
Hpy188I TCNGA 2 cut(s) 147, 217
Hpy8I GTNNAC 2 cut(s) 184, 235
HpyAV CCTTC 2 cut(s) 289, 352
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 59, 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 195
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 39, 365
Lsp1109I GCAGC 1 cut(s) 291
LweI GCATC 2 cut(s) 291, 299
MaeIII GTNAC 2 cut(s) 136, 265
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 221, 285, 353
MluCI AATT 2 cut(s) 49, 94
MnlI CCTC 3 cut(s) 84, 307, 378
Mph1103I ATGCAT 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 195
NlaIV GGNNCC 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 195
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 2 cut(s) 212, 358
PkrI GCNGC 2 cut(s) 156, 306
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 105, 388
SatI GCNGC 2 cut(s) 155, 305
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 105, 388
SetI ASST 3 cut(s) 32, 167, 281
SfaNI GCATC 2 cut(s) 291, 299
SfuI TTCGAA 1 cut(s) 92
SinI GGWCC 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 2 cut(s) 49, 94
SsiI CCGC 3 cut(s) 80, 154, 288
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 92, 364
TasI AATT 2 cut(s) 49, 94
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 212, 358
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 2 cut(s) 49, 94
XceI RCATGY 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.