Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Forward (+)

4536654 .. 4537939

Gene Structure 1286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG029700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTATGATAAAGACAATGACATGTTTAGGTTGTCTGTTAGGAACTTAAATTCTGGGGCATTGTGTAGTAAGCCTCAAGTGGAGCGTGTTTCGAATTTGGCTTGCGCCAAAGACGCGCAGGCATTGCTTTATGTCGTTACCGATCAGAAAAAGCGGCCATATAGGTGTTTTCTCGAGCAGGATGTTTTCGAAGAATTGGATAATAATGTGTATGTCAACATTAGTCACACGAAAGATTTTCGGTTTGTGACTGTAAATGCCTTCTCTACCGCGTCTTCCAAGATGCAGCCAAAGGAGTTCAGCCAGTTGATAACCATTATCTCCTTCGTAGTCATGTGGATTCTTCGAGCTGTCCAAGAATATGGGAGTTTGTCATTCCGTGCTTTAGATGTGCTCTACAGCTCATTTGTCCTTTCTGTTCCTTTATCAGTATATGGCTCTGAAATTGATATTGGACCAGTTCATCTGAAAGAGCTTCACCCACAATTCTTGCCTCTTCCAAAATTGTTCGATGCATATGTAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

176

Amino Acids

20.14

Weight (kDa)

6.82

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	116, 272
AciI	CCGC	2 cut(s)	154, 270
AcoI	YGGCCR	1 cut(s)	155
AcsI	RAATTY	2 cut(s)	49, 94
AflIII	ACRYGT	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	3 cut(s)	350, 402, 475
AluI	AGCT	3 cut(s)	350, 402, 475
Alw21I	GWGCWC	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	2 cut(s)	49, 94
AspLEI	GCGC	2 cut(s)	107, 118
AspS9I	GGNCC	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	470
AsuII	TTCGAA	2 cut(s)	92, 189
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	397
BisI	GCNGC	2 cut(s)	155, 287
BlsI	GCNGC	2 cut(s)	156, 288
Bme18I	GGWCC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	455
BmsI	GCATC	2 cut(s)	273, 502
BpiI	GAAGAC	1 cut(s)	267
Bpu14I	TTCGAA	2 cut(s)	92, 189
BpuEI	CTTGAG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	304, 458
Bse3DI	GCAATG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	122
BseNI	ACTGG	2 cut(s)	304, 458
BseXI	GCAGC	1 cut(s)	298
Bsh1236I	CGCG	2 cut(s)	116, 272
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	173
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	173
Bsp119I	TTCGAA	2 cut(s)	92, 189
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	154, 270
BspANI	GGCC	1 cut(s)	157
BspFNI	CGCG	2 cut(s)	116, 272
BspT104I	TTCGAA	2 cut(s)	92, 189
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	304, 458
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstBI	TTCGAA	2 cut(s)	92, 189
BstC8I	GCNNGC	2 cut(s)	103, 120
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	2 cut(s)	116, 272
BstHHI	GCGC	2 cut(s)	107, 118
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 124
BstNSI	RCATGY	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	2 cut(s)	116, 272
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	2 cut(s)	103, 120
CfoI	GCGC	2 cut(s)	107, 118
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	2 cut(s)	122, 261
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	2 cut(s)	22, 334
CviJI	RGCY	9 cut(s)	73, 101, 157, 289, 303, 350, 402, 438, 475
CviKI_1	RGCY	9 cut(s)	73, 101, 157, 289, 303, 350, 402, 438, 475
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	517
FaeI	CATG	2 cut(s)	25, 337
FatI	CATG	2 cut(s)	21, 333
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	155, 287
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	2 cut(s)	155, 287
GlaI	GCGC	2 cut(s)	106, 117
GluI	GCNGC	2 cut(s)	155, 287
HaeIII	GGCC	1 cut(s)	157
HgaI	GACGC	2 cut(s)	122, 261
HhaI	GCGC	2 cut(s)	107, 118
Hin1II	CATG	2 cut(s)	25, 337
Hin6I	GCGC	2 cut(s)	105, 116
HinP1I	GCGC	2 cut(s)	105, 116
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	340
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	147, 442, 468
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	271, 334
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4V	TGCA	2 cut(s)	286, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 124
Hsp92II	CATG	2 cut(s)	25, 337
HspAI	GCGC	2 cut(s)	105, 116
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	39, 104, 164, 317, 471
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	273, 502
MaeIII	GTNAC	3 cut(s)	136, 224, 247
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	4 cut(s)	203, 267, 335, 488
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	6 cut(s)	49, 94, 194, 444, 485, 503
MnlI	CCTC	2 cut(s)	84, 504
Mph1103I	ATGCAT	1 cut(s)	517
MseI	TTAA	1 cut(s)	47
MslI	CAYNNNNRTG	1 cut(s)	163
MvnI	CGCG	2 cut(s)	116, 272
MwoI	GCNNNNNNNGC	2 cut(s)	113, 124
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	25, 337
NmuCI	GTSAC	2 cut(s)	224, 247
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	2 cut(s)	92, 189
PaeR7I	CTCGAG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	156, 288
PscI	ACATGT	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	2 cut(s)	155, 287
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	32, 167, 352, 404, 477
SfaNI	GCATC	2 cut(s)	273, 502
SfcI	CTRYAG	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	2 cut(s)	92, 189
SinI	GGWCC	1 cut(s)	455
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	75, 173
SmoI	CTYRAG	2 cut(s)	75, 173
Sse9I	AATT	6 cut(s)	49, 94, 194, 444, 485, 503
SsiI	CCGC	2 cut(s)	154, 270
TaaI	ACNGT	1 cut(s)	253
TaqI	TCGA	5 cut(s)	92, 174, 189, 346, 510
TasI	AATT	6 cut(s)	49, 94, 194, 444, 485, 503
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	224, 247
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	224, 247
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	455
XapI	RAATTY	2 cut(s)	49, 94
XceI	RCATGY	1 cut(s)	25
XhoI	CTCGAG	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.