Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014832

Physical Location & Seq

Genomic Coordinates Reverse (-)

7534169 .. 7534740

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCTCCCGCTTATCCTTCGACCTCTCCACTCCTCCCCTCAAATTCGGACCATGGTACGGAACGGTAATAATGGTCTCAATTTCGTCATTTTTTAACGTTGTTGACAAAGTTTGGTGCTTTTGCGAAGGTTGTACTACCGGCCGACGCGTGGAGGAAGGTAAGCGGTTTCCGGATCTGTGTCGTCGACGCACGAGTTTACACGACGAGTTCATTTCTCATAAGTCACCTTATGCTGGGTTTGATTTTACTTCCGGGAAGAGAATTAAGCAGAAGCTGATTGATTACAATCAAGAAGCTCAAAGATTTGGAGGTTATGCATATGAAGAATTATCGGAAGTTTCGCCGGATCATCGGTTTATTGCATATACAATGTATGATAAAGACAAGAACTTGTTTAGGTTGTCTGTTAGGATCTTGAATTCTGGTGCATTGTGTAGTAAGCCTCAAGTGAAGTGTGTTTCGAATTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0070011 GO:0070012 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9 Peptidase_S9_N

Protein Analysis

158

Amino Acids

18.15

Weight (kDa)

9.05

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014832)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g12660
rosa_laevigata	RLG00000030481
rosa_samantha	Rh1CG039300 Rh1CG039400 Rh1CG039500 Rh1CG039600 Rh1CG039700 Rh1CG039800 Rh1DG029700 Rh1DG029800 Rh1DG029900 Rh1DG030000 Rh1DG030100 Rh1DG030200 Rh1DG030300 Rh1DG030400 Rh1DG030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AccII	CGCG	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	2 cut(s)	10, 166
AclI	AACGTT	1 cut(s)	99
AclWI	GGATC	3 cut(s)	183, 357, 422
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	3 cut(s)	44, 421, 466
AfaI	GTAC	2 cut(s)	59, 136
AfiI	CCNNNNNNNGG	3 cut(s)	59, 151, 236
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	421
AluBI	AGCT	2 cut(s)	277, 299
AluI	AGCT	2 cut(s)	277, 299
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	183, 357, 422
AlwNI	CAGNNNCTG	1 cut(s)	277
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	2 cut(s)	3, 142
ApoI	RAATTY	3 cut(s)	44, 421, 466
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	219
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	256
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 151, 236
Bse118I	RCCGGY	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	3 cut(s)	59, 151, 236
BseRI	GAGGAG	1 cut(s)	24
BseX3I	CGGCCG	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	5, 144
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	4 cut(s)	141, 173, 255, 347
BslI	CCNNNNNNNGG	3 cut(s)	59, 151, 236
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	5, 144
Bso31I	GGTCTC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	464
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	175, 349, 414
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	2 cut(s)	10, 166
BspANI	GGCC	2 cut(s)	5, 144
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	150
BspPI	GGATC	3 cut(s)	183, 357, 422
BspT104I	TTCGAA	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	3 cut(s)	175, 349, 414
BssSI	CACGAG	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	464
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	178, 352, 417
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	175, 349, 414
BstMCI	CGRYCG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	254
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	2 cut(s)	175, 414
BstYI	RGATCY	2 cut(s)	175, 414
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	5, 144
BtgI	CCRYGG	1 cut(s)	53
CaiI	CAGNNNCTG	1 cut(s)	277
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	2 cut(s)	156, 198
Csp6I	GTAC	2 cut(s)	58, 135
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	6 cut(s)	5, 144, 277, 299, 445, 473
CviKI_1	RGCY	6 cut(s)	5, 144, 277, 299, 445, 473
CviQI	GTAC	2 cut(s)	58, 135
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	3 cut(s)	177, 351, 416
DpnII	GATC	3 cut(s)	175, 349, 414
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	50
Eco52I	CGGCCG	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	57
FaiI	YATR	9 cut(s)	55, 222, 234, 318, 322, 324, 367, 369, 378
FatI	CATG	1 cut(s)	53
FauI	CCCGC	1 cut(s)	17
FauNDI	CATATG	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 144
HapII	CCGG	4 cut(s)	141, 173, 255, 347
HgaI	GACGC	2 cut(s)	156, 198
Hin1II	CATG	1 cut(s)	57
HincII	GTYRAC	2 cut(s)	106, 188
HindII	GTYRAC	2 cut(s)	106, 188
HpaII	CCGG	4 cut(s)	141, 173, 255, 347
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	3 cut(s)	106, 188, 200
Hpy188I	TCNGA	2 cut(s)	50, 337
Hpy188III	TCNNGA	3 cut(s)	173, 293, 418
Hpy8I	GTNNAC	3 cut(s)	106, 188, 200
Hpy99I	CGWCG	4 cut(s)	150, 189, 192, 209
HpyAV	CCTTC	3 cut(s)	28, 122, 152
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	320, 365, 431
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	175, 349, 414
LpnPI	CCDG	6 cut(s)	154, 186, 222, 268, 360, 411
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	177, 351, 416
MboI	GATC	3 cut(s)	175, 349, 414
MboII	GAAGA	2 cut(s)	271, 338
MflI	RGATCY	2 cut(s)	175, 414
MluCI	AATT	6 cut(s)	44, 81, 264, 329, 421, 466
MluI	ACGCGT	1 cut(s)	148
MnlI	CCTC	7 cut(s)	16, 35, 45, 50, 148, 305, 456
Mph1103I	ATGCAT	1 cut(s)	322
MroI	TCCGGA	1 cut(s)	172
MseI	TTAA	2 cut(s)	96, 267
MspI	CCGG	4 cut(s)	141, 173, 255, 347
MspR9I	CCNGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	53
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	3 cut(s)	175, 349, 414
NlaIII	CATG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	2 cut(s)	175, 414
RsaI	GTAC	2 cut(s)	59, 136
RsaNI	GTAC	2 cut(s)	58, 135
SalI	GTCGAC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	96, 267
Sau3AI	GATC	3 cut(s)	175, 349, 414
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	9 cut(s)	27, 102, 133, 163, 232, 279, 301, 316, 404
SfuI	TTCGAA	1 cut(s)	464
SgrDI	CGTCGACG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	447
SmoI	CTYRAG	1 cut(s)	447
Sse9I	AATT	6 cut(s)	44, 81, 264, 329, 421, 466
SsiI	CCGC	2 cut(s)	10, 166
StyD4I	CCNGG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	3 cut(s)	21, 187, 464
TasI	AATT	6 cut(s)	44, 81, 264, 329, 421, 466
TatI	WGTACW	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	96, 267
Tru9I	TTAA	2 cut(s)	96, 267
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	202, 339
TspGWI	ACGGA	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	3 cut(s)	44, 421, 466
XmiI	GTMKAC	1 cut(s)	187
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.