Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002252

Physical Location & Seq

Genomic Coordinates Forward (+)

12235671 .. 12236846

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTATAGAGGAGTTACAAGACATCACCAACATGGAAGATGGCAAGCTAGGATTGGAAGGGTTGCTGGAAATAAGGATCTTTATCTTGGGACATTCAGCACTCAAGAGGAAGCTGCTGAGGCTTATGACATAGCTGCAATCAAATTCCGAGGACTGAATGCTGTGACCAACTTTGACATAACACGGTATGATGTGGATCGAATTATGTCAAGCAATACCCTCCTTGCCGGTGAACTTGCTAAGCGAAATAAGGAGGTTGTACCCATTAATGAGGCTACTAATGAAACCAATGTTTCCCAAATCGGCAATGGGGAAGCCGTTGTCCCGCTGAAGAACATTAGTGAAGGGGAAGATTGGAAAATGGCACTCTATCAGCCCTCCCAGCACCTTGATCAGAAGCAACCAAGCACCGAAACTCAGAATGTGATTCAAGCCGAGGCAGGGGACTCTACCAAAATGGGGAATGCTCATTTTTCCAATGCCTCGTCATTGGTGACAAGCTTAGGCAGCTCAAGAGAAGCCAGCCCTGATAAGTCATGCCAGCCGAGTTTCTTCGGAATGCCTCCATCTGCTTCCAAGTTTTTCACGAGTTCGAGTGATGCAGTGAGTTCTTGGATCCCAACAGTCCAATCCAGGCCAGGACTCACCATTCCTCACATGCCAATTTTCGCTGCCTGGACAGATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

230

Amino Acids

25.04

Weight (kDa)

6.07

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	2 - 51	2.9e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37750
fragaria_vesca	FvH4_1g18270 FvH4_1g18270 FvH4_2g32640 FvH4_2g32640
malus_domestica	MD02G1190000.v1.1 MD08G1077100.v1.1 MD15G1064600.v1.1 MD15G1301100.v1.1
prunus_persica	Prupe.1G418600_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1 Prupe.6G216400_v2.0.a1
pyrus_communis	pycom02g15390 pycom02g15400 pycom08g06410 pycom15g06140 pycom15g26370
rosa_chinensis	RchiOBHm_Chr2g0108831 RchiOBHm_Chr6g0310091
rosa_laevigata	RLG00000010512 RLG00000017692
rosa_multiflora	Rmu_sc0000294.1_g000022 Rmu_sc0003973.1_g000013
rosa_roxburghii	Rroxscaffold_2G00134780 Rroxscaffold_7G00158880
rosa_rugosa	Rorug02G0156300 Rorug02G0156400 Rorug06G0377300 Rorug06G0377300
rosa_samantha	Rh2AG206600 Rh2AG206700 Rh2BG217800 Rh2CG209800 Rh2DG213000 Rh6AG491300 Rh6BG500600 Rh6CG505500 Rh6CG505600 Rh6DG491500 Rh6DG491600
rosa_wichuraiana	Rw2G016430 Rw6G042740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	4 cut(s)	84, 204, 610, 623
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	441, 459
AgsI	TTSAA	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	632, 637, 674
AluBI	AGCT	5 cut(s)	47, 113, 134, 501, 510
AluI	AGCT	5 cut(s)	47, 113, 134, 501, 510
AlwI	GGATC	4 cut(s)	84, 204, 610, 623
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	4 cut(s)	113, 134, 507, 671
ApoI	RAATTY	1 cut(s)	143
AseI	ATTAAT	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	17, 242, 505, 637
BamHI	GGATCC	1 cut(s)	615
BauI	CACGAG	1 cut(s)	586
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	4 cut(s)	100, 121, 519, 658
BccI	CCATC	2 cut(s)	33, 574
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	3 cut(s)	634, 639, 676
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	4 cut(s)	114, 135, 508, 672
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	4 cut(s)	115, 136, 509, 673
Bme1390I	CCNGG	3 cut(s)	634, 639, 676
BmiI	GGNNCC	1 cut(s)	617
BmrFI	CCNGG	3 cut(s)	634, 639, 676
BmsI	GCATC	2 cut(s)	589, 673
Bpu10I	CCTNAGC	2 cut(s)	117, 502
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	87, 496
BsaBI	GATNNNNATC	2 cut(s)	81, 195
BsaJI	CCNNGG	2 cut(s)	148, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 459
Bse118I	RCCGGY	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	2 cut(s)	81, 195
BseBI	CCWGG	3 cut(s)	634, 639, 676
BseDI	CCNNGG	2 cut(s)	148, 435
BseJI	GATNNNNATC	2 cut(s)	81, 195
BseLI	CCNNNNNNNGG	2 cut(s)	441, 459
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	108, 431
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	100, 121, 519, 658
BseYI	CCCAGC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	3 cut(s)	103, 308, 458
BslI	CCNNNNNNNGG	2 cut(s)	441, 459
BsmFI	GGGAC	3 cut(s)	103, 308, 458
BsmI	GAATGC	3 cut(s)	163, 469, 564
BsnI	GGCC	1 cut(s)	637
Bsp143I	GATC	4 cut(s)	76, 196, 391, 615
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	2 cut(s)	109, 430
BspLI	GGNNCC	1 cut(s)	617
BspPI	GGATC	4 cut(s)	84, 204, 610, 623
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	148, 435
BssMI	GATC	4 cut(s)	76, 196, 391, 615
BssSI	CACGAG	1 cut(s)	586
Bst2BI	CACGAG	1 cut(s)	586
Bst2UI	CCWGG	3 cut(s)	634, 639, 676
Bst4CI	ACNGT	2 cut(s)	186, 625
BstC8I	GCNNGC	3 cut(s)	45, 523, 542
BstDEI	CTNAG	4 cut(s)	117, 240, 417, 502
BstKTI	GATC	4 cut(s)	79, 199, 394, 618
BstMBI	GATC	4 cut(s)	76, 196, 391, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 382, 507
BstNI	CCWGG	3 cut(s)	634, 639, 676
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	3 cut(s)	632, 637, 674
BstV1I	GCAGC	4 cut(s)	100, 121, 519, 658
BstX2I	RGATCY	2 cut(s)	76, 615
BstYI	RGATCY	2 cut(s)	76, 615
BsuRI	GGCC	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	3 cut(s)	45, 523, 542
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	3 cut(s)	32, 537, 658
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	4 cut(s)	117, 240, 417, 502
DpnI	GATC	4 cut(s)	78, 198, 393, 617
DpnII	GATC	4 cut(s)	76, 196, 391, 615
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	632, 637, 674
EcoT22I	ATGCAT	1 cut(s)	688
FaeI	CATG	3 cut(s)	35, 540, 661
FaqI	GGGAC	3 cut(s)	103, 308, 458
FatI	CATG	3 cut(s)	31, 536, 657
FauI	CCCGC	1 cut(s)	333
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	4 cut(s)	114, 135, 508, 672
Fsp4HI	GCNGC	4 cut(s)	114, 135, 508, 672
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	4 cut(s)	114, 135, 508, 672
GsaI	CCCAGC	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	1 cut(s)	228
Hin1II	CATG	3 cut(s)	35, 540, 661
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	3 cut(s)	427, 446, 642
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	4 cut(s)	17, 242, 505, 637
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	4 cut(s)	149, 396, 420, 557
Hpy188III	TCNNGA	3 cut(s)	104, 513, 586
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	51, 338
HpyCH4III	ACNGT	2 cut(s)	186, 625
HpyCH4V	TGCA	3 cut(s)	137, 602, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 382, 507
HpyF3I	CTNAG	4 cut(s)	117, 240, 417, 502
Hsp92II	CATG	3 cut(s)	35, 540, 661
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	76, 196, 391, 615
Lsp1109I	GCAGC	4 cut(s)	100, 121, 519, 658
LweI	GCATC	2 cut(s)	589, 673
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	13, 163, 493
MalI	GATC	4 cut(s)	78, 198, 393, 617
MboI	GATC	4 cut(s)	76, 196, 391, 615
MboII	GAAGA	4 cut(s)	48, 343, 362, 544
MflI	RGATCY	2 cut(s)	76, 615
MluCI	AATT	3 cut(s)	143, 201, 663
MlyI	GAGTC	2 cut(s)	440, 636
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	3 cut(s)	634, 639, 676
Mva1269I	GAATGC	3 cut(s)	163, 469, 564
MvaI	CCWGG	3 cut(s)	634, 639, 676
MwoI	GCNNNNNNNGC	3 cut(s)	119, 382, 507
NdeII	GATC	4 cut(s)	76, 196, 391, 615
NlaIII	CATG	3 cut(s)	35, 540, 661
NlaIV	GGNNCC	1 cut(s)	617
NmeAIII	GCCGAG	2 cut(s)	460, 570
NmuCI	GTSAC	2 cut(s)	163, 493
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	1 cut(s)	661
PctI	GAATGC	3 cut(s)	163, 469, 564
PfeI	GAWTC	1 cut(s)	427
PkrI	GCNGC	4 cut(s)	115, 136, 509, 673
PleI	GAGTC	2 cut(s)	440, 636
PpsI	GAGTC	2 cut(s)	440, 636
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	632, 637, 674
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	3 cut(s)	632, 637, 674
PspN4I	GGNNCC	1 cut(s)	617
PsuI	RGATCY	2 cut(s)	76, 615
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	4 cut(s)	114, 135, 508, 672
Sau3AI	GATC	4 cut(s)	76, 196, 391, 615
SchI	GAGTC	2 cut(s)	440, 636
ScrFI	CCNGG	3 cut(s)	634, 639, 676
SetI	ASST	7 cut(s)	49, 115, 136, 258, 390, 503, 512
SfaNI	GCATC	2 cut(s)	589, 673
SmiMI	CAYNNNNRTG	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	102, 511
SmoI	CTYRAG	2 cut(s)	102, 511
Sse9I	AATT	3 cut(s)	143, 201, 663
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	632, 637, 674
TaaI	ACNGT	2 cut(s)	186, 625
TaqI	TCGA	2 cut(s)	199, 593
TasI	AATT	3 cut(s)	143, 201, 663
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	2 cut(s)	163, 493
TseI	GCWGC	4 cut(s)	113, 134, 507, 671
Tsp45I	GTSAC	2 cut(s)	163, 493
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	609
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.