pycom02g16720

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0005437
Physical Location & Seq
Forward (+)
13987636 .. 13989844
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
ATGTTCGAGTCTAGTATTTTCGGTCCAAGTTCCGTTTCTAGTGATACACCGGAGAGTGGTAGAGCCAATGAAATATCAGTAGAAGAACTGAACTCTGATGATGAGGGAGGGGATGGTATAGTTACTGGGGATGAGAGAGATAACTGTGGAAAGCAATCTGTTTCGAGTAAAGAACCATCTGTTGAGCATCCAGATGATGTTTTGGACGAAGAGAGGAAAAGCAAGGATGTGACATATAGAAATGACCGCAATAAGGTGGAAGGCACTCGGTCGCAAGGCCGTGGTTTATCTTTTCAGACTTGCAGAGTCACATATGGTGGTGTAGATGGAGCATATTACACGTCTACGAGAACCAGAAGGGCGGGCAGTGATGGCGTGGTGCTTGAGGAGGCCAAAGAAGCAGATAAGACAACCGGTCAAGCAACACATAGAATCTCGAGAGGACTTTATGACAAGGGTCATTCTGTTACGAGGAAGCTCAAGTCAGATGGGAAGGTGGATATGTTGCAAACTTTACACAATTTAAATGAAGATGAGCTTCCTGGTTTTGAAGAAGCATGGACTGGTAATGTTGGAGGGCACTTGCCCAGCTGGAGACATGAATTTGATATGCATGGCAATACCAGTTCCTCCACTAGCAGAGAGCAGAATAGAGAGGTGATTTCGGGAGTGCGGCTTCTTCCATCTTCTGAGCACATGCAAAGCAGCAGAGGAATGAAATCAGACAACGCAACAAAGACTACCTCCGATGGGAGGACCAAAAGGGTTGTCAGAATCAATATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

263

Amino Acids

28.85

Weight (kDa)

5.48

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 48 - 189 8.2e-18 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 344
AciI CCGC 3 cut(s) 247, 362, 673
AcsI RAATTY 1 cut(s) 602
AfiI CCNNNNNNNGG 4 cut(s) 56, 253, 750, 753
AflIII ACRYGT 1 cut(s) 339
AgeI ACCGGT 1 cut(s) 413
AgsI TTSAA 1 cut(s) 551
AhdI GACNNNNNGTC 1 cut(s) 414
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 2 cut(s) 19, 51
AluBI AGCT 3 cut(s) 478, 538, 591
AluI AGCT 3 cut(s) 478, 538, 591
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 589
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 2 cut(s) 277, 390
ApeKI GCWGC 1 cut(s) 705
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 753, 785
AsiGI ACCGGT 1 cut(s) 413
AspS9I GGNCC 2 cut(s) 23, 756
AsuHPI GGTGA 1 cut(s) 670
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 2 cut(s) 23, 756
BaeGI GKGCMC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 717
BccI CCATC 7 cut(s) 107, 184, 320, 365, 482, 691, 743
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 3 cut(s) 12, 39, 636
BisI GCNGC 2 cut(s) 674, 706
BlsI GCNGC 2 cut(s) 675, 707
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 2 cut(s) 23, 756
BmeRI GACNNNNNGTC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 436
BmgBI CACGTC 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 23, 756
BmrFI CCNGG 1 cut(s) 543
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 135
BoxI GACNNNNGTC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 613
BpuEI CTTGAG 2 cut(s) 404, 464
BsaJI CCNNGG 1 cut(s) 280
BsaWI WCCGGW 2 cut(s) 49, 413
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 253, 750, 753
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 3 cut(s) 130, 568, 624
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 1 cut(s) 280
BseGI GGATG 4 cut(s) 118, 136, 187, 232
BseLI CCNNNNNNNGG 4 cut(s) 56, 253, 750, 753
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 3 cut(s) 130, 568, 624
BseRI GAGGAG 1 cut(s) 401
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 1 cut(s) 717
BseYI CCCAGC 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 279, 392
BshTI ACCGGT 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 2 cut(s) 50, 414
BslI CCNNNNNNNGG 4 cut(s) 56, 253, 750, 753
BsmAI GTCTC 1 cut(s) 589
BsnI GGCC 2 cut(s) 279, 392
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 582, 696
BspACI CCGC 3 cut(s) 247, 362, 673
BspANI GGCC 2 cut(s) 279, 392
BspCNI CTCAG 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 3 cut(s) 130, 568, 624
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 690
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 4 cut(s) 118, 136, 187, 232
BstMAI GTCTC 1 cut(s) 589
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 372, 398
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 700
BstPAI GACNNNNGTC 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 541
BstSLI GKGCMC 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 717
BsuRI GGCC 2 cut(s) 279, 392
BtgI CCRYGG 1 cut(s) 280
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 4 cut(s) 118, 136, 187, 232
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 364
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 23, 756
CspAI ACCGGT 1 cut(s) 413
CviAII CATG 4 cut(s) 558, 599, 614, 697
CviJI RGCY 7 cut(s) 65, 279, 392, 478, 538, 591, 676
CviKI_1 RGCY 7 cut(s) 65, 279, 392, 478, 538, 591, 676
DdeI CTNAG 1 cut(s) 690
DraI TTTAAA 1 cut(s) 525
DriI GACNNNNNGTC 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 204
Eam1105I GACNNNNNGTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 204
Eco47I GGWCC 2 cut(s) 23, 756
Eco88I CYCGRG 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 541
EcoT22I ATGCAT 1 cut(s) 615
FaeI CATG 4 cut(s) 561, 602, 617, 700
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FatI CATG 4 cut(s) 557, 598, 613, 696
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 1 cut(s) 313
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 2 cut(s) 674, 706
FokI GGATG 4 cut(s) 125, 143, 174, 239
Fsp4HI GCNGC 2 cut(s) 674, 706
FspBI CTAG 3 cut(s) 12, 39, 636
GluI GCNGC 2 cut(s) 674, 706
GsaI CCCAGC 1 cut(s) 591
GsuI CTGGAG 1 cut(s) 613
HaeIII GGCC 2 cut(s) 279, 392
HapII CCGG 2 cut(s) 50, 414
Hin1II CATG 4 cut(s) 561, 602, 617, 700
HinfI GANTC 4 cut(s) 8, 306, 432, 774
HpaII CCGG 2 cut(s) 50, 414
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 7 cut(s) 97, 297, 487, 691, 724, 748, 773
Hpy188III TCNNGA 4 cut(s) 191, 436, 438, 666
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 3 cut(s) 254, 351, 487
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 303, 508, 613, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 372, 398
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 1 cut(s) 341
Hsp92II CATG 4 cut(s) 561, 602, 617, 700
LmnI GCTCC 1 cut(s) 329
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 12, 39, 636
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 4 cut(s) 121, 229, 307, 466
MboII GAAGA 6 cut(s) 95, 221, 542, 563, 671, 678
MhlI GDGCHC 2 cut(s) 582, 696
MluCI AATT 2 cut(s) 520, 602
MlyI GAGTC 2 cut(s) 17, 315
MmeI TCCRAC 1 cut(s) 553
Mph1103I ATGCAT 1 cut(s) 615
MseI TTAA 1 cut(s) 524
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 2 cut(s) 50, 414
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 372, 398
NdeI CATATG 1 cut(s) 313
NlaIII CATG 4 cut(s) 561, 602, 617, 700
NmuCI GTSAC 2 cut(s) 229, 307
NsiI ATGCAT 1 cut(s) 615
NspI RCATGY 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 436
PfeI GAWTC 2 cut(s) 432, 774
PinAI ACCGGT 1 cut(s) 413
PkrI GCNGC 2 cut(s) 675, 707
PleI GAGTC 2 cut(s) 16, 314
PpsI GAGTC 2 cut(s) 16, 314
PshAI GACNNNNGTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 1 cut(s) 541
PspPI GGNCC 2 cut(s) 23, 756
PvuII CAGCTG 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 2 cut(s) 674, 706
Sau96I GGNCC 2 cut(s) 23, 756
SchI GAGTC 2 cut(s) 17, 315
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 2 cut(s) 582, 696
SetI ASST 8 cut(s) 258, 344, 480, 498, 540, 593, 660, 746
SfaNI GCATC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 436
SinI GGWCC 2 cut(s) 23, 756
SlaI CTCGAG 1 cut(s) 436
SmiI ATTTAAAT 1 cut(s) 525
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 3 cut(s) 383, 436, 479
SmoI CTYRAG 3 cut(s) 383, 436, 479
Sse9I AATT 2 cut(s) 520, 602
SsiI CCGC 3 cut(s) 247, 362, 673
SspMI CTAG 3 cut(s) 12, 39, 636
StyD4I CCNGG 1 cut(s) 541
SwaI ATTTAAAT 1 cut(s) 525
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 344
TaqI TCGA 3 cut(s) 6, 164, 437
TaqII GACCGA 2 cut(s) 11, 258
TasI AATT 2 cut(s) 520, 602
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 2 cut(s) 432, 774
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 229, 307
TseI GCWGC 1 cut(s) 705
Tsp45I GTSAC 2 cut(s) 229, 307
TspDTI ATGAA 4 cut(s) 84, 543, 615, 731
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 23, 756
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 344
XspI CTAG 3 cut(s) 12, 39, 636
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.