Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001821

Physical Location & Seq

Genomic Coordinates Reverse (-)

15627132 .. 15630271

Gene Structure 3140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATGGATGGTCGCAATATGTTGATGTTACAGGAAAATGACTTATTATCTGAGACTGGCAGTCAAGAGAATGGAGCTGGAATTGAAAAGGTGGAAAGCTCCCAGTGCTTAGTTGATGAATTGGATTCCACTGACAGGAACGAGGATATTGTTTCACAAGACTCTAAGCTTGCCTCCAATGTTGTAGACGACTCTGTGTTGACATCAATTCCAGAGCAATACGATACTGTAGAAGAGGATTTAGAACCAGCTCGGAATAATGACGCCTCATGTTCAAAAGATACTTTGATCTGGAAAGAGGAAAACTCTGATGCTCCAAATGTTCCGGAGTGCTATACAAAGGTTGCAGAGTCACAGTTTCCGATAAAGGTTGAAGATTTCTTTAGTTTATTTTTCTCCGACGATGTGTTCACAGAATCATTTCATAGAAGTTGTGGAGATAAAGAGTTGAAGTGTACTCCATGGAAACCTCATGATAAGTTTGGCCATTCCCGTGATGTTTCTTTTCAGCACCCTATAAAAGTTTATTTTGGTGCAAAATTTGGCAGCTGCCAGGAGCTCCAGAAATTTCGAGTTCACAGAAACAGCCACTTAGTTATTGAGACATCACAAGAAATCAATGATGTGCCTTATGGAGATTATTTCCGTGTTGAGGGATTTTGGGACATTGAGAGAGATCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0010033 GO:0010941 GO:0012505 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4782 GRAM

Protein Analysis

228

Amino Acids

26.06

Weight (kDa)

4.46

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VASt	PF16016	115 - 225	7.2e-27	VAD1 Analog of StAR-related lipid transfer domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02120 AT1G02120 AT1G02120
fragaria_vesca	FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200 FvH4_7g10200
malus_domestica	MD02G1212800.v1.1 MD07G1109200.v1.1
prunus_persica	Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1 Prupe.2G131900_v2.0.a1
pyrus_communis	pycom02g17530 pycom07g09350
rosa_chinensis	RchiOBHm_Chr1g0347921
rosa_laevigata	RLG00000003066 RLG00000028703 RLG00000030623
rosa_multiflora	Rmu_co8098638.1_g000001 Rmu_ssc0000342.1_g000013 Rmu_ssc0000342.1_g000014 Rmu_ssc0000342.1_g000015
rosa_roxburghii	Rroxscaffold_4G00307370
rosa_rugosa	Rorug01G0190400
rosa_samantha	Rh1AG208900 Rh1BG173500 Rh1CG193100 Rh1DG203500 Rh2CG347700 Rh4AG404300 Rh4BG415400 Rh5AG377600
rosa_wichuraiana	Rw1G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	2 cut(s)	539, 566
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	2 cut(s)	135, 652
AgsI	TTSAA	4 cut(s)	86, 276, 374, 451
AhdI	GACNNNNNGTC	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	6 cut(s)	77, 99, 169, 251, 549, 559
AluI	AGCT	6 cut(s)	77, 99, 169, 251, 549, 559
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	47, 596
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	546, 549
ApoI	RAATTY	2 cut(s)	539, 566
Asp700I	GAANNNNTTC	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	486
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	536, 558
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	47, 596
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	2 cut(s)	547, 550
BlsI	GCNGC	2 cut(s)	548, 551
Bme1390I	CCNGG	1 cut(s)	554
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	554
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	97
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	545
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	461
BsaWI	WCCGGW	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 652
Bse1I	ACTGG	2 cut(s)	61, 103
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	135, 652
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	61, 103
BseXI	GCAGC	2 cut(s)	536, 558
BshFI	GGCC	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	135, 652
BsmAI	GTCTC	2 cut(s)	47, 596
BsmFI	GGGAC	1 cut(s)	677
BsnI	GGCC	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	288, 676
Bsp19I	CCATGG	1 cut(s)	461
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	61, 103
BssECI	CCNNGG	1 cut(s)	461
BssMI	GATC	2 cut(s)	288, 676
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	2 cut(s)	229, 357
Bst6I	CTCTTC	1 cut(s)	228
BstACI	GRCGYC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	4 cut(s)	51, 109, 165, 592
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	2 cut(s)	291, 679
BstMAI	GTCTC	2 cut(s)	47, 596
BstMBI	GATC	2 cut(s)	288, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	536, 558
BsuRI	GGCC	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	110, 129
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	472
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	456
CviAII	CATG	3 cut(s)	270, 462, 473
CviJI	RGCY	8 cut(s)	77, 99, 169, 251, 486, 549, 559, 588
CviKI_1	RGCY	8 cut(s)	77, 99, 169, 251, 486, 549, 559, 588
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	4 cut(s)	51, 109, 165, 592
DpnI	GATC	2 cut(s)	290, 678
DpnII	GATC	2 cut(s)	288, 676
DriI	GACNNNNNGTC	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	228
Eam1105I	GACNNNNNGTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	461
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	273, 465, 476
FaiI	YATR	8 cut(s)	20, 271, 336, 426, 463, 474, 518, 633
FaqI	GGGAC	1 cut(s)	677
FatI	CATG	3 cut(s)	269, 461, 472
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	547, 550
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	2 cut(s)	547, 550
GluI	GCNGC	2 cut(s)	547, 550
GsuI	CTGGAG	1 cut(s)	545
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	273, 465, 476
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	5 cut(s)	125, 161, 191, 350, 416
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	5 cut(s)	187, 201, 411, 456, 577
Hpy188I	TCNGA	5 cut(s)	52, 255, 310, 363, 400
Hpy188III	TCNNGA	6 cut(s)	65, 212, 292, 326, 473, 562
Hpy8I	GTNNAC	5 cut(s)	187, 201, 411, 456, 577
Hpy99I	CGWCG	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	229, 357
HpyCH4V	TGCA	2 cut(s)	347, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	4 cut(s)	51, 109, 165, 592
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	273, 465, 476
Kpn2I	TCCGGA	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	288, 676
LmnI	GCTCC	5 cut(s)	74, 104, 319, 556, 564
Lsp1109I	GCAGC	2 cut(s)	536, 558
LweI	GCATC	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	27, 351
MalI	GATC	2 cut(s)	290, 678
MboI	GATC	2 cut(s)	288, 676
MboII	GAAGA	2 cut(s)	245, 386
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	5 cut(s)	81, 119, 207, 539, 566
MluNI	TGGCCA	1 cut(s)	486
MlyI	GAGTC	3 cut(s)	155, 185, 359
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	7 cut(s)	136, 184, 229, 277, 292, 480, 646
Mox20I	TGGCCA	1 cut(s)	486
MroI	TCCGGA	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	549
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	461
NdeII	GATC	2 cut(s)	288, 676
NlaIII	CATG	3 cut(s)	273, 465, 476
NmuCI	GTSAC	1 cut(s)	351
PagI	TCATGA	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	125, 416
PkrI	GCNGC	2 cut(s)	548, 551
PleI	GAGTC	3 cut(s)	155, 185, 358
PpsI	GAGTC	3 cut(s)	155, 185, 358
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PvuII	CAGCTG	1 cut(s)	549
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	561
SatI	GCNGC	2 cut(s)	547, 550
Sau3AI	GATC	2 cut(s)	288, 676
SchI	GAGTC	3 cut(s)	155, 185, 359
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	5 cut(s)	81, 119, 207, 539, 566
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	229, 357
TaqI	TCGA	1 cut(s)	571
TasI	AATT	5 cut(s)	81, 119, 207, 539, 566
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	125, 416
TscAI	CASTG	2 cut(s)	110, 136
TseFI	GTSAC	1 cut(s)	351
TseI	GCWGC	2 cut(s)	546, 549
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	132, 413
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	2 cut(s)	110, 136
XapI	RAATTY	2 cut(s)	539, 566
XmiI	GTMKAC	1 cut(s)	186
XmnI	GAANNNNTTC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.