Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005056

Physical Location & Seq

Genomic Coordinates Reverse (-)

13499386 .. 13500756

Gene Structure 1371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTCAAGGAACTAACTGGTGGATATAAAATCAAGTATCAATCGAATGGGCTCGACAAGGATCCAATTGAGATTGACTTTACTCCTCCTTTCAGGTCCGTAAACTATATTTTGGTCATAAGGATCGACATGGTTGAGGAATTAAATAAGATTGCAGGTCTCAACATAAATCCAGACGATCTCTCCAGTGCGGAAGCTAACCAATACCTTAAGGATGTGTGCAAGAAGTTTGATATCAAATGTTCCCGTCCTGAAACAACAACTCGTCTGTTAGACAAGCCTGTTTACGATTTTCATTTGCTTTCCAGCTTGCCAAATGCATACACAGAATTGAATGATCCCGTGGTACAACGCCAACGATTTGCTGATCAACTCAAGAAATCTAATGATATATGGTTTTGGGTTCAGGACCGACAATCAGGTGATGATGAAGCAATGGCTTTGGACGAAGCATTTTGTAGAGCTCTTGAGTACGGTTTATCTCCAACTGGTGGTTGGGGTTTGGGCGTTGATCGGCTCTGTATGTTGCTAACTGATTCACAAAATATTAAGTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0009506 GO:0016874 GO:0016875 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0140098 GO:0140101

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2 tRNA_anti-codon

Protein Analysis

187

Amino Acids

21.24

Weight (kDa)

4.77

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	105 - 184	6.1e-16	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11710 AT3G30805
fragaria_vesca	FvH4_2g08732 FvH4_4g07860 FvH4_4g07860 FvH4_4g07860 FvH4_6g23270
malus_domestica	MD03G1170800.v1.1 MD13G1247500.v1.1 MD13G1247600.v1.1 MD13G1248200.v1.1 MD16G1255000.v1.1
prunus_persica	Prupe.1G082400_v2.0.a1 Prupe.1G082400_v2.0.a1 Prupe.1G083700_v2.0.a1
pyrus_communis	pycom03g12770 pycom13g21870 pycom13g21930 pycom16g21650
rosa_chinensis	RchiOBHm_Chr4g0401131
rosa_laevigata	RLG00000009161
rosa_multiflora	Rmu_sc0001909.1_g000026 Rmu_sc0037183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345980
rosa_rugosa	Rorug02G0525300 Rorug04G0028100
rosa_samantha	Rh2DG614600 Rh4BG100600 Rh4DG097900
rosa_wichuraiana	Rw4G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	491
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	4 cut(s)	56, 69, 131, 332
AfaI	GTAC	2 cut(s)	348, 473
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	3 cut(s)	197, 309, 464
AluI	AGCT	3 cut(s)	197, 309, 464
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	4 cut(s)	56, 69, 131, 332
AspS9I	GGNCC	2 cut(s)	96, 409
AsuHPI	GGTGA	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	96, 409
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	54, 466
Bbv12I	GWGCWC	1 cut(s)	466
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	96, 409
BmgT120I	GGNCC	2 cut(s)	96, 409
BmiI	GGNNCC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	359, 488
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	3 cut(s)	22, 186, 493
Bse3DI	GCAATG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	441
BseNI	ACTGG	3 cut(s)	22, 186, 493
BseRI	GAGGAG	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	54, 466
Bsp143I	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
BspACI	CCGC	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	4 cut(s)	56, 69, 131, 332
BspTI	CTTAAG	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	22, 186, 493
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
Bst4CI	ACNGT	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	6 cut(s)	64, 126, 181, 340, 370, 514
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	193
BveI	ACCTGC	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	96, 409
Csp6I	GTAC	2 cut(s)	347, 472
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	7 cut(s)	52, 197, 280, 309, 440, 464, 517
CviKI_1	RGCY	7 cut(s)	52, 197, 280, 309, 440, 464, 517
CviQI	GTAC	2 cut(s)	347, 472
DpnI	GATC	6 cut(s)	63, 125, 180, 339, 369, 513
DpnII	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
Ecl136II	GAGCTC	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	54, 466
Eco31I	GGTCTC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	96, 409
Eco53kI	GAGCTC	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	2 cut(s)	54, 466
FaeI	CATG	1 cut(s)	133
FaiI	YATR	9 cut(s)	27, 108, 119, 131, 167, 322, 392, 394, 524
FatI	CATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	367
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	2 cut(s)	54, 466
GsuI	CTGGAG	1 cut(s)	169
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	103, 286
Hpy188III	TCNNGA	5 cut(s)	173, 251, 376, 407, 467
Hpy8I	GTNNAC	2 cut(s)	103, 286
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4V	TGCA	3 cut(s)	155, 222, 320
Hsp92II	CATG	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
MalI	GATC	6 cut(s)	63, 125, 180, 339, 369, 513
MboI	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	54, 466
MluCI	AATT	3 cut(s)	66, 140, 329
MmeI	TCCRAC	2 cut(s)	509, 534
MnlI	CCTC	2 cut(s)	96, 130
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	143, 210, 549
MspCI	CTTAAG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	66
NdeII	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	63
NsiI	ATGCAT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	96, 409
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	2 cut(s)	348, 473
RsaNI	GTAC	2 cut(s)	347, 472
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	3 cut(s)	143, 210, 549
Sau3AI	GATC	6 cut(s)	61, 123, 178, 337, 367, 511
Sau96I	GGNCC	2 cut(s)	96, 409
SduI	GDGCHC	2 cut(s)	54, 466
SetI	ASST	7 cut(s)	98, 160, 199, 210, 311, 424, 466
SinI	GGWCC	2 cut(s)	96, 409
SmlI	CTYRAG	3 cut(s)	209, 374, 467
SmoI	CTYRAG	3 cut(s)	209, 374, 467
Sse9I	AATT	3 cut(s)	66, 140, 329
SsiI	CCGC	1 cut(s)	191
SspI	AATATT	1 cut(s)	547
SstI	GAGCTC	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	476
TaqI	TCGA	3 cut(s)	44, 54, 126
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	3 cut(s)	66, 140, 329
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	143, 210, 549
Tru9I	TTAA	3 cut(s)	143, 210, 549
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	284, 444
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	96, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.