pycom03g15370

Nucleolar pre-ribosomal-associated protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0002923
Physical Location & Seq
Forward (+)
16653102 .. 16657177
4076 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2439 bp
ATGTTGTGGTGCGACACGTGTCCCCATACCTCACAGCAAATCAAACCAGACCATCTCTGTTCTTCAATGGAAGGAAGGTCAGCCTCCGAAAATCAAGCTATGGTGTTTGAAGAAATGCCTAAACCTACAATTAAAGTAACCCACGAAGCTAAACTTAAAGAGCTACTGCATAATCTTAACTCTGCTGAAATTAAATTATGTTCTCATGCTACAAAAGAGTTCATTAAGTTGCTGAAAGGTGATAACGGAGGTGATTTGCTCCGTTATTATGTGAAGAATTCGGGTAAGTGCTCGGAGCTTCTCAGTGCTTGGAAGCTCCGGCGAGGGAAACCCGGAATGTTTTGTGTATTTAAACTAATTGCTGTTGTTTTGAGTCATCCTGATGGGATGTATATGCCGAATGATGTGGAGAGGATGGGTATTAGCCGGGCATTGGATAAGTTTGCACGGTCGATTATTGAAGAACAGTTGCAGGATGTGTATAAGGAGTTGAATAGTAAAGAAGCAAAACGCCAAAAGGCGGCGCTTTTGCTTTTGGCTTCCATTGTGAGGCGTGGGTCGGGGTTGGCTTCTGAGGTTGCAAAGAATTTCGATTTCAAACTCCAGGGTTTTTTTAAGATGGGTGAATTTAAAAAGAAGCAGGGTGAGAAAAGAATGAAGCTGTCGTTGAGGAAGTCGTTTGTGGGATTCGCAATGTCATTTTTGGAGGTGGGGACACCGGGATTGCTGAGGTCGGTTATACGTCAGAAGGAAATGTACTCTGGTGTCCTTCGCGGGATTGGGAATGATGATGATGAAACTGTTATCTACGTTTTGTCCACGTTGAGGGACAGGATTCTTGTTGAAGAGTCATCAGTTTCCCCGAGTCTTCGGAGTGTTCTCTTTGGGAGTGTTACTTTGGAACAATTAGTTAACGTCTGTGCAAGGGAAAATGGTGGGCCTTCTGCGGAATTGGCATACAATGTTTTGGTTATGGTTTGTACCAATCCTAGTAATGGCTTGATGTCAGATTTGAAGAAACGTCTGAAGGGTAATTCAAAGCGACTCGTGGATCTGATGAAGAAGCTTAAAGCAACTGAGATTGGCTACCACAGGGATCTTCTTTTGGCTATTGTTAGTGGAAGACCGTCTATTGGTGCAACATATATGGAAGAGTTCCCCTACAATCTTGAAGATTATTCATCACCTAACTGGTTTTCTGTTGTTATTCTTGCAGCAAACTTGGTTTCTTCAGTGCGCAGCGGGCATGCCTTTGGTATCAATGACTCTCAGTCTCATAATCCAGCCATGTTTGACAATGTGGACGTGCAGGATATCATGAAATGCTTGTATCCTCGTTCATTCAGCCGGTCTGCAATCAATAAGGGGCTGCTTCACTCTGATTTTCTAGTGAAGCATGGATCTTTAAGGCTTCTTTTAGAAGCACTGAAGTTGCTGGACTCCTTCCATGGTGTTTTAAACCATAGAGACCAAAGTTATTCTGATAATGAGAAGGTATACGTATTGGAGTCTTTCAAGCAAGAATTTCAAAATGAAGTCCGAAACTTGCTCCCTGATCATCAAGTTATGTTGACTCTACTTTCTTCTCTGAGTAGTCACTCCAAAAGTCAGCAGTTAAGCTTAAAGAGGACAGCTGAGTTGGAGCAGTTCCCTGAACATAGCCCCAAACGCTTGAAAAGAATGAAAACAGATGTGGGGAACAAGGACTCAGATATTGTTGTAGGTGGGTTAAATTTTGATCCCGATGTTGCTTCACCCAAGAACTGTGAAAGAGTTGCAGGTGCATCCACTGCGGATGCATTGGATAATGAAAAGGATGCTATAAATGTTATGGCAGAAATTTGGGGTTTGGATCTTCAATCCACACATATTAATACATTAAAGGATGCTGAGATGTACTTCTACTGTAGGCTACTCGATGCTCTCAAAACTTATCTTCGGATAATGCCCACTGGCTTGGAGGGATCATTTGAATTTTTTATGAATCTTCTAAGCAGCCCTTTAGCATCAGAAACAGATCTGCAGTGCTCTCTTTTGTCTTTGTTAACAGAATACGTTGGATTGTCTGCAAAGAGTAGAACTCCGATTAGGACTCCACCCCTGATGTATAAACATCTTTTGACATTCATGAACTTGCTAGTTTTTTCACAAGTCAGTGACATAAGGGATCAAGCGTATCATCTTGCACAAGCAGCTATGTTAAGTCTGGTGCTTTTGACAGAAACCAGCATGAAATCGCATCATGGTTCTTGTTTTTACCCGGTTTTGGTAGAAGAAAATCTTCTGTTGAAGTACTGGAGGTGGAAGTATTACAAAGCTTGTGTCGTGTTGTCATCTCATTCTTATGTGATGCCGTTTCTACTACTGGGAATGGTTTGTTCAAATACTGGGATATTGTTAAGCGTTATACCTGCCCTTTGGAAATTAGTAAAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NopRA1 Npa1

Protein Analysis

813

Amino Acids

91.37

Weight (kDa)

8.76

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Npa1 PF11707 98 - 400 1.2e-48 Ribosome 60S biogenesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1769
Acc16I TGCGCA 1 cut(s) 1238
Acc36I ACCTGC 2 cut(s) 1769, 2419
AccI GTMKAC 1 cut(s) 1497
AccII CGCG 1 cut(s) 774
AciI CCGC 5 cut(s) 521, 774, 947, 1242, 1793
AclWI GGATC 7 cut(s) 1059, 1104, 1408, 1733, 1860, 1972, 2175
AcsI RAATTY 7 cut(s) 277, 586, 626, 1523, 1732, 1839, 1973
AcuI CTGAAG 3 cut(s) 1046, 1215, 1448
AcvI CACGTG 1 cut(s) 18
AfaI GTAC 4 cut(s) 758, 982, 1898, 2294
AfiI CCNNNNNNNGG 7 cut(s) 433, 520, 549, 825, 995, 1133, 2266
AflIII ACRYGT 2 cut(s) 15, 17
AhdI GACNNNNNGTC 1 cut(s) 1270
AjiI CACGTC 1 cut(s) 1306
AjnI CCWGG 1 cut(s) 603
Alw21I GWGCWC 2 cut(s) 293, 2030
Alw26I GTCTC 2 cut(s) 1278, 1461
AlwI GGATC 7 cut(s) 1059, 1104, 1408, 1733, 1860, 1972, 2175
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 1 cut(s) 938
ApeKI GCWGC 5 cut(s) 1214, 1239, 1369, 1995, 2192
ApoI RAATTY 7 cut(s) 277, 586, 626, 1523, 1732, 1839, 1973
ArsI GACNNNNNNTTYG 2 cut(s) 2307, 2339
AseI ATTAAT 1 cut(s) 1872
Asp700I GAANNNNTTC 1 cut(s) 2280
AspLEI GCGC 2 cut(s) 526, 1239
AspS9I GGNCC 1 cut(s) 938
AsuC2I CCSGG 4 cut(s) 333, 428, 720, 2261
AsuHPI GGTGA 6 cut(s) 251, 263, 635, 656, 1176, 1746
AvaI CYCGRG 1 cut(s) 862
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
BauI CACGAG 1 cut(s) 1046
BbrPI CACGTG 1 cut(s) 18
BbsI GAAGAC 2 cut(s) 860, 1129
Bbv12I GWGCWC 2 cut(s) 293, 2030
BbvCI CCTCAGC 1 cut(s) 728
BbvI GCAGC 5 cut(s) 1226, 1251, 1356, 2007, 2204
BccI CCATC 4 cut(s) 60, 377, 409, 613
BceAI ACGGC 1 cut(s) 2338
BciT130I CCWGG 1 cut(s) 605
BciVI GTATCC 1 cut(s) 1341
BclI TGATCA 1 cut(s) 1555
BcnI CCSGG 4 cut(s) 333, 428, 720, 2261
BcoDI GTCTC 2 cut(s) 1278, 1461
BfaI CTAG 3 cut(s) 990, 1388, 2138
BfmI CTRYAG 2 cut(s) 1906, 2021
BfoI RGCGCY 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 1769, 2419
BfuI GTATCC 1 cut(s) 1341
BglII AGATCT 1 cut(s) 2017
BisI GCNGC 6 cut(s) 522, 1215, 1240, 1370, 1996, 2193
BlsI GCNGC 6 cut(s) 523, 1216, 1241, 1371, 1997, 2194
BmcAI AGTACT 1 cut(s) 2294
Bme1390I CCNGG 5 cut(s) 333, 428, 605, 720, 2261
BmeRI GACNNNNNGTC 1 cut(s) 1270
BmeT110I CYCGRG 1 cut(s) 862
BmgBI CACGTC 1 cut(s) 1306
BmgT120I GGNCC 1 cut(s) 938
BmrFI CCNGG 5 cut(s) 333, 428, 605, 720, 2261
BmrI ACTGGG 2 cut(s) 2375, 2397
BmsI GCATC 8 cut(s) 1786, 1793, 1807, 1876, 1909, 2015, 2248, 2340
BmuI ACTGGG 2 cut(s) 2375, 2397
BoxI GACNNNNGTC 1 cut(s) 18
BpiI GAAGAC 2 cut(s) 860, 1129
BplI GAGNNNNNCTC 2 cut(s) 2065, 2097
BpmI CTGGAG 2 cut(s) 587, 2317
Bpu10I CCTNAGC 1 cut(s) 728
BpuMI CCSGG 4 cut(s) 333, 428, 720, 2261
BsaAI YACGTR 2 cut(s) 18, 1501
BsaI GGTCTC 1 cut(s) 1461
BsaJI CCNNGG 2 cut(s) 604, 1447
Bsc4I CCNNNNNNNGG 7 cut(s) 433, 520, 549, 825, 995, 1133, 2266
Bse118I RCCGGY 1 cut(s) 1347
Bse1I ACTGG 5 cut(s) 1196, 1957, 2300, 2370, 2392
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 1 cut(s) 605
BseDI CCNNGG 2 cut(s) 604, 1447
BseGI GGATG 8 cut(s) 376, 393, 420, 481, 1784, 1801, 1822, 1891
BseLI CCNNNNNNNGG 7 cut(s) 433, 520, 549, 825, 995, 1133, 2266
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 9 cut(s) 316, 564, 719, 1068, 1283, 1580, 1626, 1722, 1881
BseNI ACTGG 5 cut(s) 1196, 1957, 2300, 2370, 2392
BseXI GCAGC 5 cut(s) 1226, 1251, 1356, 2007, 2204
BsgI GTGCAG 1 cut(s) 1328
Bsh1236I CGCG 1 cut(s) 774
Bsh1285I CGRYCG 1 cut(s) 452
BshFI GGCC 1 cut(s) 940
BsiEI CGRYCG 1 cut(s) 452
BsiHKAI GWGCWC 2 cut(s) 293, 2030
BsiHKCI CYCGRG 1 cut(s) 862
BsiSI CCGG 6 cut(s) 319, 333, 427, 719, 1348, 2261
BslFI GGGAC 3 cut(s) 6, 727, 842
BslI CCNNNNNNNGG 7 cut(s) 433, 520, 549, 825, 995, 1133, 2266
BsmAI GTCTC 2 cut(s) 1278, 1461
BsmFI GGGAC 3 cut(s) 6, 727, 842
BsnI GGCC 1 cut(s) 940
Bso31I GGTCTC 1 cut(s) 1461
BsoBI CYCGRG 1 cut(s) 862
Bsp1286I GDGCHC 2 cut(s) 293, 2030
Bsp143I GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
Bsp19I CCATGG 1 cut(s) 1447
BspACI CCGC 5 cut(s) 521, 774, 947, 1242, 1793
BspANI GGCC 1 cut(s) 940
BspCNI CTCAG 9 cut(s) 315, 565, 720, 1069, 1282, 1581, 1627, 1721, 1882
BspFNI CGCG 1 cut(s) 774
BspHI TCATGA 2 cut(s) 1317, 2127
BspMAI CTGCAG 1 cut(s) 2025
BspMI ACCTGC 2 cut(s) 1769, 2419
BspPI GGATC 7 cut(s) 1059, 1104, 1408, 1733, 1860, 1972, 2175
BspTNI GGTCTC 1 cut(s) 1461
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 1347
BsrI ACTGG 5 cut(s) 1196, 1957, 2300, 2370, 2392
BssAI RCCGGY 1 cut(s) 1347
BssECI CCNNGG 2 cut(s) 604, 1447
BssMI GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
BssNAI GTATAC 1 cut(s) 1498
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 1 cut(s) 1447
Bst1107I GTATAC 1 cut(s) 1498
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 1 cut(s) 605
Bst4CI ACNGT 6 cut(s) 450, 468, 802, 1128, 1766, 1907
Bst6I CTCTTC 2 cut(s) 840, 1146
BstAPI GCANNNNNTGC 1 cut(s) 1790
BstBAI YACGTR 2 cut(s) 18, 1501
BstC8I GCNNGC 2 cut(s) 1244, 1248
BstDSI CCRYGG 1 cut(s) 1447
BstF5I GGATG 8 cut(s) 376, 393, 420, 481, 1784, 1801, 1822, 1891
BstFNI CGCG 1 cut(s) 774
BstH2I RGCGCY 1 cut(s) 527
BstHHI GCGC 2 cut(s) 526, 1239
BstKTI GATC 9 cut(s) 1054, 1099, 1403, 1558, 1741, 1855, 1967, 2020, 2170
BstMAI GTCTC 2 cut(s) 1278, 1461
BstMBI GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
BstMCI CGRYCG 1 cut(s) 452
BstMWI GCNNNNNNNGC 5 cut(s) 953, 1243, 1668, 1790, 2192
BstNI CCWGG 1 cut(s) 605
BstNSI RCATGY 1 cut(s) 1250
BstPAI GACNNNNGTC 1 cut(s) 18
BstSCI CCNGG 5 cut(s) 331, 426, 603, 718, 2259
BstSFI CTRYAG 2 cut(s) 1906, 2021
BstSNI TACGTA 1 cut(s) 1501
BstUI CGCG 1 cut(s) 774
BstV1I GCAGC 5 cut(s) 1226, 1251, 1356, 2007, 2204
BstV2I GAAGAC 2 cut(s) 860, 1129
BstX2I RGATCY 5 cut(s) 1051, 1096, 1400, 1852, 2017
BstXI CCANNNNNNTGG 1 cut(s) 1957
BstYI RGATCY 5 cut(s) 1051, 1096, 1400, 1852, 2017
BstZ17I GTATAC 1 cut(s) 1498
BsuI GTATCC 1 cut(s) 1341
BsuRI GGCC 1 cut(s) 940
BtgI CCRYGG 1 cut(s) 1447
BtrI CACGTC 1 cut(s) 1306
BtsCI GGATG 8 cut(s) 376, 393, 420, 481, 1784, 1801, 1822, 1891
BtsI GCAGTG 2 cut(s) 1788, 2030
BtsIMutI CAGTG 7 cut(s) 310, 1239, 1424, 1788, 1950, 2030, 2161
BveI ACCTGC 2 cut(s) 1769, 2419
Cac8I GCNNGC 2 cut(s) 1244, 1248
CciI TCATGA 2 cut(s) 1317, 2127
CfoI GCGC 2 cut(s) 526, 1239
Cfr10I RCCGGY 1 cut(s) 1347
Cfr13I GGNCC 1 cut(s) 938
Csp6I GTAC 4 cut(s) 757, 981, 1897, 2293
CviAII CATG 9 cut(s) 206, 1247, 1288, 1318, 1397, 1448, 2128, 2230, 2243
CviQI GTAC 4 cut(s) 757, 981, 1897, 2293
DpnI GATC 9 cut(s) 1053, 1098, 1402, 1557, 1740, 1854, 1966, 2019, 2169
DpnII GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
DraI TTTAAA 3 cut(s) 352, 631, 1458
DriI GACNNNNNGTC 1 cut(s) 1270
Eam1104I CTCTTC 2 cut(s) 840, 1146
Eam1105I GACNNNNNGTC 1 cut(s) 1270
EarI CTCTTC 2 cut(s) 840, 1146
Eco105I TACGTA 1 cut(s) 1501
Eco130I CCWWGG 1 cut(s) 1447
Eco31I GGTCTC 1 cut(s) 1461
Eco32I GATATC 1 cut(s) 1315
Eco57I CTGAAG 3 cut(s) 1046, 1215, 1448
Eco72I CACGTG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 603
EcoRV GATATC 1 cut(s) 1315
EcoT14I CCWWGG 1 cut(s) 1447
EcoT22I ATGCAT 1 cut(s) 1801
ErhI CCWWGG 1 cut(s) 1447
FaeI CATG 9 cut(s) 209, 1250, 1291, 1321, 1400, 1451, 2131, 2233, 2246
FalI AAGNNNNNCTT 6 cut(s) 138, 170, 1984, 2016, 2265, 2297
FaqI GGGAC 3 cut(s) 6, 727, 842
FatI CATG 9 cut(s) 205, 1246, 1287, 1317, 1396, 1447, 2127, 2229, 2242
FauI CCCGC 2 cut(s) 767, 1235
FbaI TGATCA 1 cut(s) 1555
FblI GTMKAC 1 cut(s) 1497
Fnu4HI GCNGC 6 cut(s) 522, 1215, 1240, 1370, 1996, 2193
FokI GGATG 8 cut(s) 363, 400, 427, 488, 1771, 1808, 1829, 1898
Fsp4HI GCNGC 6 cut(s) 522, 1215, 1240, 1370, 1996, 2193
FspBI CTAG 3 cut(s) 990, 1388, 2138
FspI TGCGCA 1 cut(s) 1238
GlaI GCGC 2 cut(s) 525, 1238
GluI GCNGC 6 cut(s) 522, 1215, 1240, 1370, 1996, 2193
GsuI CTGGAG 2 cut(s) 587, 2317
HaeII RGCGCY 1 cut(s) 527
HaeIII GGCC 1 cut(s) 940
HapII CCGG 6 cut(s) 319, 333, 427, 719, 1348, 2261
HhaI GCGC 2 cut(s) 526, 1239
Hin1II CATG 9 cut(s) 209, 1250, 1291, 1321, 1400, 1451, 2131, 2233, 2246
Hin6I GCGC 2 cut(s) 524, 1237
HinP1I GCGC 2 cut(s) 524, 1237
HincII GTYRAC 3 cut(s) 913, 1572, 2046
HindII GTYRAC 3 cut(s) 913, 1572, 2046
HindIII AAGCTT 3 cut(s) 1064, 1618, 2316
HpaI GTTAAC 2 cut(s) 913, 2046
HpaII CCGG 6 cut(s) 319, 333, 427, 719, 1348, 2261
HphI GGTGA 6 cut(s) 251, 263, 635, 656, 1176, 1746
Hpy166II GTNNAC 6 cut(s) 819, 913, 1303, 1498, 1572, 2046
Hpy188III TCNNGA 5 cut(s) 380, 1169, 1318, 1742, 2128
Hpy8I GTNNAC 6 cut(s) 819, 913, 1303, 1498, 1572, 2046
HpyAV CCTTC 8 cut(s) 65, 69, 742, 779, 951, 1021, 1453, 1486
HpyCH4III ACNGT 6 cut(s) 450, 468, 802, 1128, 1766, 1907
HpyCH4IV ACGT 9 cut(s) 17, 742, 810, 821, 915, 1021, 1305, 1500, 2055
HpyF10VI GCNNNNNNNGC 5 cut(s) 953, 1243, 1668, 1790, 2192
HpySE526I ACGT 9 cut(s) 17, 742, 810, 821, 915, 1021, 1305, 1500, 2055
Hsp92II CATG 9 cut(s) 209, 1250, 1291, 1321, 1400, 1451, 2131, 2233, 2246
HspAI GCGC 2 cut(s) 524, 1237
Ksp22I TGATCA 1 cut(s) 1555
KspAI GTTAAC 2 cut(s) 913, 2046
Kzo9I GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
LmnI GCTCC 5 cut(s) 264, 295, 321, 1554, 1642
Lsp1109I GCAGC 5 cut(s) 1226, 1251, 1356, 2007, 2204
LweI GCATC 8 cut(s) 1786, 1793, 1807, 1876, 1909, 2015, 2248, 2340
MaeI CTAG 3 cut(s) 990, 1388, 2138
MaeII ACGT 9 cut(s) 17, 742, 810, 821, 915, 1021, 1305, 1500, 2055
MaeIII GTNAC 4 cut(s) 136, 892, 1595, 2156
MalI GATC 9 cut(s) 1053, 1098, 1402, 1557, 1740, 1854, 1966, 2019, 2169
MboI GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
MflI RGATCY 5 cut(s) 1051, 1096, 1400, 1852, 2017
MhlI GDGCHC 2 cut(s) 293, 2030
MmeI TCCRAC 2 cut(s) 1620, 2038
Mph1103I ATGCAT 1 cut(s) 1801
MroXI GAANNNNTTC 1 cut(s) 2280
MslI CAYNNNNRTG 2 cut(s) 381, 2343
MspA1I CMGCKG 2 cut(s) 1242, 1634
MspI CCGG 6 cut(s) 319, 333, 427, 719, 1348, 2261
MspR9I CCNGG 5 cut(s) 333, 428, 605, 720, 2261
MvaI CCWGG 1 cut(s) 605
MvnI CGCG 1 cut(s) 774
MwoI GCNNNNNNNGC 5 cut(s) 953, 1243, 1668, 1790, 2192
NciI CCSGG 4 cut(s) 333, 428, 720, 2261
NcoI CCATGG 1 cut(s) 1447
NdeII GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
NlaIII CATG 9 cut(s) 209, 1250, 1291, 1321, 1400, 1451, 2131, 2233, 2246
NmuCI GTSAC 2 cut(s) 1595, 2156
NsbI TGCGCA 1 cut(s) 1238
NsiI ATGCAT 1 cut(s) 1801
NspI RCATGY 1 cut(s) 1250
PaeI GCATGC 1 cut(s) 1250
PagI TCATGA 2 cut(s) 1317, 2127
PaqCI CACCTGC 1 cut(s) 1769
PdmI GAANNNNTTC 1 cut(s) 2280
PfeI GAWTC 3 cut(s) 687, 835, 1984
PkrI GCNGC 6 cut(s) 523, 1216, 1241, 1371, 1997, 2194
PmaCI CACGTG 1 cut(s) 18
PmlI CACGTG 1 cut(s) 18
Ppu21I YACGTR 2 cut(s) 18, 1501
PshAI GACNNNNGTC 1 cut(s) 18
PshBI ATTAAT 1 cut(s) 1872
Psp6I CCWGG 1 cut(s) 603
PspCI CACGTG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 603
PspPI GGNCC 1 cut(s) 938
PstI CTGCAG 1 cut(s) 2025
PsuI RGATCY 5 cut(s) 1051, 1096, 1400, 1852, 2017
PvuII CAGCTG 1 cut(s) 1634
RsaI GTAC 4 cut(s) 758, 982, 1898, 2294
RsaNI GTAC 4 cut(s) 757, 981, 1897, 2293
RseI CAYNNNNRTG 2 cut(s) 381, 2343
SatI GCNGC 6 cut(s) 522, 1215, 1240, 1370, 1996, 2193
Sau3AI GATC 9 cut(s) 1051, 1096, 1400, 1555, 1738, 1852, 1964, 2017, 2167
Sau96I GGNCC 1 cut(s) 938
ScaI AGTACT 1 cut(s) 2294
ScrFI CCNGG 5 cut(s) 333, 428, 605, 720, 2261
SduI GDGCHC 2 cut(s) 293, 2030
SfaNI GCATC 8 cut(s) 1786, 1793, 1807, 1876, 1909, 2015, 2248, 2340
SfcI CTRYAG 2 cut(s) 1906, 2021
SmiMI CAYNNNNRTG 2 cut(s) 381, 2343
SnaBI TACGTA 1 cut(s) 1501
SphI GCATGC 1 cut(s) 1250
SsiI CCGC 5 cut(s) 521, 774, 947, 1242, 1793
SspMI CTAG 3 cut(s) 990, 1388, 2138
StyD4I CCNGG 5 cut(s) 331, 426, 603, 718, 2259
StyI CCWWGG 1 cut(s) 1447
TaaI ACNGT 6 cut(s) 450, 468, 802, 1128, 1766, 1907
TaiI ACGT 9 cut(s) 20, 745, 813, 824, 918, 1024, 1308, 1503, 2058
TaqI TCGA 3 cut(s) 452, 591, 1917
TatI WGTACW 3 cut(s) 756, 1896, 2292
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 3 cut(s) 687, 835, 1984
TscAI CASTG 7 cut(s) 310, 1239, 1431, 1795, 1957, 2030, 2161
TseFI GTSAC 2 cut(s) 1595, 2156
TseI GCWGC 5 cut(s) 1214, 1239, 1369, 1995, 2192
Tsp45I GTSAC 2 cut(s) 1595, 2156
TspGWI ACGGA 2 cut(s) 251, 261
TspRI CASTG 7 cut(s) 310, 1239, 1431, 1795, 1957, 2030, 2161
VspI ATTAAT 1 cut(s) 1872
XapI RAATTY 7 cut(s) 277, 586, 626, 1523, 1732, 1839, 1973
XceI RCATGY 1 cut(s) 1250
XmiI GTMKAC 1 cut(s) 1497
XmnI GAANNNNTTC 1 cut(s) 2280
XspI CTAG 3 cut(s) 990, 1388, 2138
ZrmI AGTACT 1 cut(s) 2294
Zsp2I ATGCAT 1 cut(s) 1801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.