Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011080

Physical Location & Seq

Genomic Coordinates Forward (+)

18393166 .. 18398093

Gene Structure 4928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGTGGAACAAGCTTAAGGAAGTGGGTACCGGAAAGCAGTTGACCATGGAGGAGTTTGAGATGAGTGTCGGGCATTCACCTATTGTTCAAGAACTGATGAGGAGGCAGAATGTGGAGGAGGGTCATAAGGATGGTTCCGAGACCAATGCCAATGGGGGGAATGGTGGAGTTTCGAAGTTGAAGAAGAAAGGAGGTTGGTTAAAGAGCATCAAGAGTGTCGCGATCACCATGACAGGTCATAAGGATAGGCGGAGTAGCGATGAGAGGGACACATCATCGGAGAAAGGTGGTCGGAGGTCGAGCTCTGCCACAGATGATAGCCAGGATGTGTCATTTCATGGGCCGGAGAGGGTGAGGGTGAAGCAGTATGGGAAGTCATGTAAGGAGGTCACTGCATTGTTCAAGAGTCAGGAGATTCATGCGCATACCGGGTCGATTTGGAGTATCAAGTTTAGTTTGGATGGAAAATACTTGGCCAGTGCCGGTGAGGATTGCGTGATTCATATTTGGCAGGTAATGCAGAGTGAAAGGAAGGGTGACCTATTGATGGAGAAATCAGAAGATAGCAATTTAACCATGTTGTTGTTTGCCAATGGATCACCAGAACCATGTTCAGTCTCGCCGAAAGTGGACAACCATGTGGAAAAAAAGAGGAGAGGGAGGTCGTCTATCAGTCGAAAGTCTCTAAGTTTGGACCATTATGTGATTCCAGAGACTGTGTTTGCACTTTCAGAGAAACCCATTTATTCATTCGAAGGGCATCTGGATGATGTGCTTGACCTCTCTTGGTCCAAGTCGCAGCACCTGCTCTCATCTTCAATGGACAAAACCGTGCGCCTCTGGCACTTGGCTAGCAAGACTTGCCTGAAGATATTTTCACATAGTGACTATGTAACTTGTATCCAGTTCAACCCTGTTGATGATAGGTACTTCATTAGTGGGTCACTTGATGCCAAGGTTCGCATTTGGAGTATCCCTGATCGTCAAGTGGTTGACATACCAGTTGGAATGATCTGCACGAGATGGTCACTGCTGCTTGCTACACTCCTGATGGGCGCCCTAGTTGGTTCATACAAAGGTAGCTGCCGTTTATACAACACATCTGAGAACAAGTTGCAAGAGAAAAGCCAAATTAATTTGCAGAACAAGAAAAAGAAATCCCATCACAAGAAAATTACAGGTTTTCAGTTTGCACCAGGAAGTTCATCAGAAGTATTGATTACATCTGCAGATTCACGAATCAGAGTTGTTGACGGTGTTGATCTGGTTCACAAGTTCAAGGGATTTCGGAACGCAAATAGCCAAATCTCAGCTGCCCTCACAGCAAATGGTAGATATGTGGTATCTGCTAGTGAGGATTCTCATGTATATATATGGAAACATGAAGCTGATTCCCGCCCTAGCAGAAGCAAAAGCGTCAGAGTCACACGCTCCTATGAGCATTTCCATTGTCAAGATGTATCAGTGGCCATCCCTTGGCCTGGAATGGCTGATTTATGGGGTTTACAAGATTCAGAACGGAATGGTCCTGACGAGGTTTCCACAGAAATTCACCCCCCTACACCTGTTGAGGCGGCTAATTCCAACGAGGGTTCACGATCAGCATCTGGTTGCACCAGTAGCCCTCTCCACGGAACAATTTCAAGTGCATCCAACAGTTACTTCTTTGATAGAATTTCGGCAACATGGCCGGAGGAAAAACTTCTTCTAGCTACCAGGAACCGAAGCCCACGTGTTAGTTTTGATTTCACCAACGGGTTAAGCCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGTGAAATTAGAACTTTCCTAAATTTTGGGTTGCCGATTCGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048471 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

620

Amino Acids

68.91

Weight (kDa)

9.02

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	135 - 173	1.5e-07	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	135 - 177	7e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	136 - 371	1.5e-13	WDR3 second beta-propeller domain
WD40	PF00400	137 - 170	7e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	139 - 178	1.5e-06	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	243 - 325	2e-13	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	244 - 308	6.1e-08	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	245 - 462	2.4e-31	WDR5 beta-propeller domain
WD40_Prp19	PF24814	245 - 330	1.6e-09	Prp19 WD40 domain
WD40	PF00400	246 - 281	7.3e-08	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	247 - 330	3.2e-08	CDC20/Fizzy WD40 domain
EIF3I	PF24805	249 - 448	4.4e-07	EIF3I
Beta-prop_CAF1B_HIR1	PF24105	251 - 331	6.3e-12	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	255 - 461	3.5e-19	THOC3 beta-propeller domain
WD40	PF00400	287 - 324	5.5e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15470 AT5G54200
fragaria_vesca	FvH4_3g20610 FvH4_3g20610
malus_domestica	MD03G1223700.v1.1 MD11G1241600.v1.1
prunus_persica	Prupe.4G185800_v2.0.a1 Prupe.4G185800_v2.0.a1
pyrus_communis	pycom03g17200 pycom03g17210 pycom11g21320
rosa_chinensis	RchiOBHm_Chr5g0034631
rosa_laevigata	RLG00000033560
rosa_roxburghii	Rroxscaffold_1G00045690
rosa_rugosa	Rorug05G0147300
rosa_samantha	Rh5AG239300 Rh5BG240000 Rh5CG270400 Rh5DG248200
rosa_wichuraiana	Rw5G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	813
Acc16I	TGCGCA	1 cut(s)	423
Acc36I	ACCTGC	2 cut(s)	502, 813
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	2 cut(s)	26, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	1476
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	250, 1396, 1574
AclWI	GGATC	1 cut(s)	604
AcoI	YGGCCR	3 cut(s)	474, 1467, 1688
AcsI	RAATTY	3 cut(s)	1548, 1674, 1834
AcuI	CTGAAG	1 cut(s)	887
AcvI	CACGTG	1 cut(s)	1733
AcyI	GRCGYC	1 cut(s)	1056
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	2 cut(s)	28, 929
AfiI	CCNNNNNNNGG	5 cut(s)	156, 547, 1476, 1481, 1631
AflII	CTTAAG	1 cut(s)	14
AflIII	ACRYGT	2 cut(s)	1732, 1770
AgsI	TTSAA	7 cut(s)	89, 181, 403, 819, 910, 1279, 1644
AjnI	CCWGG	5 cut(s)	321, 1195, 1480, 1715, 1778
AjuI	GAANNNNNNNTTGG	2 cut(s)	1646, 1678
AluBI	AGCT	6 cut(s)	13, 303, 1083, 1313, 1388, 1712
AluI	AGCT	6 cut(s)	13, 303, 1083, 1313, 1388, 1712
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	4 cut(s)	134, 622, 687, 707
AlwI	GGATC	1 cut(s)	604
AlwNI	CAGNNNCTG	3 cut(s)	716, 805, 1607
AoxI	GGCC	6 cut(s)	341, 474, 1467, 1478, 1688, 1804
ApeKI	GCWGC	4 cut(s)	799, 1033, 1083, 1313
ApoI	RAATTY	3 cut(s)	1548, 1674, 1834
AseI	ATTAAT	1 cut(s)	1134
Asp700I	GAANNNNTTC	2 cut(s)	1639, 1701
Asp718I	GGTACC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	424, 837, 1058
AspS9I	GGNCC	4 cut(s)	341, 694, 789, 1526
AsuC2I	CCSGG	1 cut(s)	430
AsuII	TTCGAA	2 cut(s)	173, 753
AsuNHI	GCTAGC	1 cut(s)	851
AvaII	GGWCC	3 cut(s)	694, 789, 1526
BalI	TGGCCA	2 cut(s)	476, 1469
BanI	GGYRCC	2 cut(s)	26, 1055
BanII	GRGCYC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	1018
BbrPI	CACGTG	1 cut(s)	1733
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	811, 1020, 1070, 1300
BccI	CCATC	7 cut(s)	125, 455, 541, 1017, 1045, 1170, 1478
BceAI	ACGGC	1 cut(s)	1071
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	5 cut(s)	323, 1197, 1482, 1717, 1780
BciVI	GTATCC	2 cut(s)	911, 983
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	4 cut(s)	134, 622, 687, 707
BfaI	CTAG	5 cut(s)	852, 1061, 1350, 1401, 1709
BfmI	CTRYAG	1 cut(s)	1227
BfoI	RGCGCY	1 cut(s)	1059
BfrI	CTTAAG	1 cut(s)	14
BfuAI	ACCTGC	2 cut(s)	502, 813
BfuI	GTATCC	2 cut(s)	911, 983
BisI	GCNGC	5 cut(s)	800, 1034, 1084, 1314, 1575
BlsI	GCNGC	5 cut(s)	801, 1035, 1085, 1315, 1576
Bme1390I	CCNGG	6 cut(s)	323, 430, 1197, 1482, 1717, 1780
Bme18I	GGWCC	3 cut(s)	694, 789, 1526
BmgT120I	GGNCC	4 cut(s)	341, 694, 789, 1526
BmiI	GGNNCC	4 cut(s)	28, 136, 1057, 1721
BmrFI	CCNGG	6 cut(s)	323, 430, 1197, 1482, 1717, 1780
BmsI	GCATC	5 cut(s)	216, 769, 940, 1613, 1658
BmtI	GCTAGC	1 cut(s)	855
Bpu14I	TTCGAA	2 cut(s)	173, 753
BpuMI	CCSGG	1 cut(s)	430
BsaAI	YACGTR	1 cut(s)	1733
BsaBI	GATNNNNATC	2 cut(s)	1603, 1853
BsaHI	GRCGYC	1 cut(s)	1056
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	5 cut(s)	45, 954, 1475, 1630, 1779
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 547, 1476, 1481, 1631
Bse118I	RCCGGY	2 cut(s)	482, 1802
Bse1I	ACTGG	4 cut(s)	477, 904, 1001, 1617
Bse8I	GATNNNNATC	2 cut(s)	1603, 1853
BseBI	CCWGG	5 cut(s)	323, 1197, 1482, 1717, 1780
BseDI	CCNNGG	5 cut(s)	45, 954, 1475, 1630, 1779
BseGI	GGATG	6 cut(s)	136, 331, 466, 772, 1470, 1649
BseJI	GATNNNNATC	2 cut(s)	1603, 1853
BseLI	CCNNNNNNNGG	5 cut(s)	156, 547, 1476, 1481, 1631
BseMII	CTCAG	2 cut(s)	1095, 1323
BseNI	ACTGG	4 cut(s)	477, 904, 1001, 1617
BseRI	GAGGAG	4 cut(s)	65, 115, 131, 667
BseXI	GCAGC	4 cut(s)	811, 1020, 1070, 1300
BsgI	GTGCAG	1 cut(s)	1000
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	6 cut(s)	343, 476, 1469, 1480, 1690, 1806
BshNI	GGYRCC	2 cut(s)	26, 1055
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	6 cut(s)	30, 344, 429, 483, 1691, 1803
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	5 cut(s)	156, 547, 1476, 1481, 1631
BsmAI	GTCTC	4 cut(s)	134, 622, 687, 707
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	6 cut(s)	343, 476, 1469, 1480, 1690, 1806
Bso31I	GGTCTC	1 cut(s)	134
Bsp119I	TTCGAA	2 cut(s)	173, 753
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
Bsp19I	CCATGG	1 cut(s)	45
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	3 cut(s)	250, 1396, 1574
BspANI	GGCC	6 cut(s)	343, 476, 1469, 1480, 1690, 1806
BspCNI	CTCAG	2 cut(s)	1096, 1322
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	4 cut(s)	28, 136, 1057, 1721
BspMAI	CTGCAG	1 cut(s)	1231
BspMI	ACCTGC	2 cut(s)	502, 813
BspOI	GCTAGC	1 cut(s)	855
BspPI	GGATC	1 cut(s)	604
BspT104I	TTCGAA	2 cut(s)	173, 753
BspT107I	GGYRCC	2 cut(s)	26, 1055
BspTI	CTTAAG	1 cut(s)	14
BspTNI	GGTCTC	1 cut(s)	134
BsrFI	RCCGGY	2 cut(s)	482, 1802
BsrI	ACTGG	4 cut(s)	477, 904, 1001, 1617
BssAI	RCCGGY	2 cut(s)	482, 1802
BssECI	CCNNGG	5 cut(s)	45, 954, 1475, 1630, 1779
BssMI	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
BssNI	GRCGYC	1 cut(s)	1056
BssSI	CACGAG	1 cut(s)	1018
BssT1I	CCWWGG	3 cut(s)	45, 954, 1475
Bst2BI	CACGAG	1 cut(s)	1018
Bst2UI	CCWGG	5 cut(s)	323, 1197, 1482, 1717, 1780
Bst4CI	ACNGT	4 cut(s)	718, 832, 1256, 1658
BstACI	GRCGYC	1 cut(s)	1056
BstAFI	CTTAAG	1 cut(s)	14
BstAPI	GCANNNNNTGC	3 cut(s)	517, 805, 861
BstBAI	YACGTR	1 cut(s)	1733
BstBI	TTCGAA	2 cut(s)	173, 753
BstC8I	GCNNGC	3 cut(s)	853, 1038, 1804
BstDEI	CTNAG	3 cut(s)	686, 1104, 1309
BstDSI	CCRYGG	2 cut(s)	45, 1630
BstEII	GGTNACC	1 cut(s)	536
BstF5I	GGATG	6 cut(s)	136, 331, 466, 772, 1470, 1649
BstFNI	CGCG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	1059
BstHHI	GCGC	3 cut(s)	424, 837, 1058
BstKTI	GATC	7 cut(s)	225, 599, 982, 1014, 1264, 1601, 1857
BstMAI	GTCTC	4 cut(s)	134, 622, 687, 707
BstMBI	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
BstMWI	GCNNNNNNNGC	6 cut(s)	517, 805, 841, 861, 1322, 1620
BstNI	CCWGG	5 cut(s)	323, 1197, 1482, 1717, 1780
BstNSI	RCATGY	1 cut(s)	1774
BstPI	GGTNACC	1 cut(s)	536
BstSCI	CCNGG	6 cut(s)	321, 428, 1195, 1480, 1715, 1778
BstSFI	CTRYAG	1 cut(s)	1227
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	811, 1020, 1070, 1300
BstX2I	RGATCY	1 cut(s)	1854
BstYI	RGATCY	1 cut(s)	1854
BsuI	GTATCC	2 cut(s)	911, 983
BsuRI	GGCC	6 cut(s)	343, 476, 1469, 1480, 1690, 1806
BtgI	CCRYGG	2 cut(s)	45, 1630
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	6 cut(s)	136, 331, 466, 772, 1470, 1649
BtsI	GCAGTG	2 cut(s)	390, 1028
BtsIMutI	CAGTG	4 cut(s)	390, 484, 1028, 1470
BtuMI	TCGCGA	1 cut(s)	221
BveI	ACCTGC	2 cut(s)	502, 813
Cac8I	GCNNGC	3 cut(s)	853, 1038, 1804
CaiI	CAGNNNCTG	3 cut(s)	716, 805, 1607
CfoI	GCGC	3 cut(s)	424, 837, 1058
Cfr10I	RCCGGY	2 cut(s)	482, 1802
Cfr13I	GGNCC	4 cut(s)	341, 694, 789, 1526
CseI	GACGC	1 cut(s)	1405
Csp6I	GTAC	2 cut(s)	27, 928
CviQI	GTAC	2 cut(s)	27, 928
DdeI	CTNAG	3 cut(s)	686, 1104, 1309
DinI	GGCGCC	1 cut(s)	1057
DpnI	GATC	7 cut(s)	224, 598, 981, 1013, 1263, 1600, 1856
DpnII	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
DraIII	CACNNNGTG	1 cut(s)	884
EaeI	YGGCCR	3 cut(s)	474, 1467, 1688
EciI	GGCGGA	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	3 cut(s)	45, 954, 1475
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	694, 789, 1526
Eco53kI	GAGCTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	887
Eco72I	CACGTG	1 cut(s)	1733
Eco91I	GGTNACC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	303
EcoO65I	GGTNACC	1 cut(s)	536
EcoRII	CCWGG	5 cut(s)	321, 1195, 1480, 1715, 1778
EcoT14I	CCWWGG	3 cut(s)	45, 954, 1475
EcoT38I	GRGCYC	1 cut(s)	305
EgeI	GGCGCC	1 cut(s)	1057
EheI	GGCGCC	1 cut(s)	1057
ErhI	CCWWGG	3 cut(s)	45, 954, 1475
FaqI	GGGAC	1 cut(s)	281
FauI	CCCGC	1 cut(s)	1403
Fnu4HI	GCNGC	5 cut(s)	800, 1034, 1084, 1314, 1575
FokI	GGATG	6 cut(s)	143, 338, 473, 779, 1457, 1636
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	5 cut(s)	800, 1034, 1084, 1314, 1575
FspAI	RTGCGCAY	1 cut(s)	423
FspBI	CTAG	5 cut(s)	852, 1061, 1350, 1401, 1709
FspI	TGCGCA	1 cut(s)	423
GlaI	GCGC	3 cut(s)	423, 836, 1057
GluI	GCNGC	5 cut(s)	800, 1034, 1084, 1314, 1575
HaeII	RGCGCY	1 cut(s)	1059
HaeIII	GGCC	6 cut(s)	343, 476, 1469, 1480, 1690, 1806
HapII	CCGG	6 cut(s)	30, 344, 429, 483, 1691, 1803
HgaI	GACGC	1 cut(s)	1405
HhaI	GCGC	3 cut(s)	424, 837, 1058
Hin1I	GRCGYC	1 cut(s)	1056
Hin6I	GCGC	3 cut(s)	422, 835, 1056
HinP1I	GCGC	3 cut(s)	422, 835, 1056
HincII	GTYRAC	3 cut(s)	42, 994, 1252
HindII	GTYRAC	3 cut(s)	42, 994, 1252
HindIII	AAGCTT	1 cut(s)	11
HpaII	CCGG	6 cut(s)	30, 344, 429, 483, 1691, 1803
Hpy166II	GTNNAC	7 cut(s)	42, 631, 994, 1252, 1270, 1505, 1595
Hpy8I	GTNNAC	7 cut(s)	42, 631, 994, 1252, 1270, 1505, 1595
HpyAV	CCTTC	3 cut(s)	526, 749, 1817
HpyCH4III	ACNGT	4 cut(s)	718, 832, 1256, 1658
HpyCH4IV	ACGT	1 cut(s)	1732
HpyF10VI	GCNNNNNNNGC	6 cut(s)	517, 805, 841, 861, 1322, 1620
HpyF3I	CTNAG	3 cut(s)	686, 1104, 1309
HpySE526I	ACGT	1 cut(s)	1732
Hsp92I	GRCGYC	1 cut(s)	1056
HspAI	GCGC	3 cut(s)	422, 835, 1056
KasI	GGCGCC	1 cut(s)	1055
KpnI	GGTACC	1 cut(s)	30
KroI	GCCGGC	1 cut(s)	1802
KroNI	GCCGGC	1 cut(s)	1804
Kzo9I	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
LmnI	GCTCC	1 cut(s)	1436
Lsp1109I	GCAGC	4 cut(s)	811, 1020, 1070, 1300
LweI	GCATC	5 cut(s)	216, 769, 940, 1613, 1658
MaeI	CTAG	5 cut(s)	852, 1061, 1350, 1401, 1709
MaeII	ACGT	1 cut(s)	1732
MaeIII	GTNAC	9 cut(s)	388, 536, 884, 892, 942, 1026, 1423, 1658, 1795
MalI	GATC	7 cut(s)	224, 598, 981, 1013, 1263, 1600, 1856
MboI	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
MboII	GAAGA	6 cut(s)	193, 196, 572, 807, 880, 1697
MflI	RGATCY	1 cut(s)	1854
MhlI	GDGCHC	1 cut(s)	305
MlsI	TGGCCA	2 cut(s)	476, 1469
MluNI	TGGCCA	2 cut(s)	476, 1469
Mly113I	GGCGCC	1 cut(s)	1056
MlyI	GAGTC	2 cut(s)	415, 1431
MmeI	TCCRAC	4 cut(s)	272, 985, 1608, 1677
Mox20I	TGGCCA	2 cut(s)	476, 1469
MroNI	GCCGGC	1 cut(s)	1802
MroXI	GAANNNNTTC	2 cut(s)	1639, 1701
MscI	TGGCCA	2 cut(s)	476, 1469
MseI	TTAA	5 cut(s)	15, 200, 572, 1134, 1760
MslI	CAYNNNNRTG	2 cut(s)	129, 765
Msp20I	TGGCCA	2 cut(s)	476, 1469
MspA1I	CMGCKG	1 cut(s)	1313
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	6 cut(s)	30, 344, 429, 483, 1691, 1803
MspR9I	CCNGG	6 cut(s)	323, 430, 1197, 1482, 1717, 1780
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	5 cut(s)	323, 1197, 1482, 1717, 1780
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	6 cut(s)	517, 805, 841, 861, 1322, 1620
NaeI	GCCGGC	1 cut(s)	1804
NarI	GGCGCC	1 cut(s)	1056
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
NgoMIV	GCCGGC	1 cut(s)	1802
NheI	GCTAGC	1 cut(s)	851
NlaIV	GGNNCC	4 cut(s)	28, 136, 1057, 1721
NmuCI	GTSAC	6 cut(s)	388, 536, 884, 942, 1026, 1423
NruI	TCGCGA	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	423
NspI	RCATGY	1 cut(s)	1774
NspV	TTCGAA	2 cut(s)	173, 753
PaqCI	CACCTGC	1 cut(s)	813
PciI	ACATGT	1 cut(s)	1770
PctI	GAATGC	1 cut(s)	73
PdiI	GCCGGC	1 cut(s)	1804
PdmI	GAANNNNTTC	2 cut(s)	1639, 1701
PfeI	GAWTC	9 cut(s)	415, 499, 706, 1232, 1239, 1358, 1391, 1511, 1849
PflMI	CCANNNNNTGG	1 cut(s)	1476
PkrI	GCNGC	5 cut(s)	801, 1035, 1085, 1315, 1576
PleI	GAGTC	2 cut(s)	414, 1430
PluTI	GGCGCC	1 cut(s)	1059
PmaCI	CACGTG	1 cut(s)	1733
PmlI	CACGTG	1 cut(s)	1733
PpsI	GAGTC	2 cut(s)	414, 1430
Ppu21I	YACGTR	1 cut(s)	1733
PscI	ACATGT	1 cut(s)	1770
PshBI	ATTAAT	1 cut(s)	1134
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	5 cut(s)	321, 1195, 1480, 1715, 1778
PspCI	CACGTG	1 cut(s)	1733
PspEI	GGTNACC	1 cut(s)	536
PspGI	CCWGG	5 cut(s)	321, 1195, 1480, 1715, 1778
PspN4I	GGNNCC	4 cut(s)	28, 136, 1057, 1721
PspPI	GGNCC	4 cut(s)	341, 694, 789, 1526
PstI	CTGCAG	1 cut(s)	1231
PstNI	CAGNNNCTG	3 cut(s)	716, 805, 1607
PsuI	RGATCY	1 cut(s)	1854
PvuII	CAGCTG	1 cut(s)	1313
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	2 cut(s)	28, 929
RsaNI	GTAC	2 cut(s)	27, 928
RseI	CAYNNNNRTG	2 cut(s)	129, 765
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	5 cut(s)	15, 200, 572, 1134, 1760
SatI	GCNGC	5 cut(s)	800, 1034, 1084, 1314, 1575
Sau3AI	GATC	7 cut(s)	222, 596, 979, 1011, 1261, 1598, 1854
Sau96I	GGNCC	4 cut(s)	341, 694, 789, 1526
SchI	GAGTC	2 cut(s)	415, 1431
ScrFI	CCNGG	6 cut(s)	323, 430, 1197, 1482, 1717, 1780
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	5 cut(s)	216, 769, 940, 1613, 1658
SfcI	CTRYAG	1 cut(s)	1227
SfoI	GGCGCC	1 cut(s)	1057
SfuI	TTCGAA	2 cut(s)	173, 753
SinI	GGWCC	3 cut(s)	694, 789, 1526
SmiMI	CAYNNNNRTG	2 cut(s)	129, 765
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SsiI	CCGC	3 cut(s)	250, 1396, 1574
SspDI	GGCGCC	1 cut(s)	1055
SspMI	CTAG	5 cut(s)	852, 1061, 1350, 1401, 1709
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	6 cut(s)	321, 428, 1195, 1480, 1715, 1778
StyI	CCWWGG	3 cut(s)	45, 954, 1475
TaaI	ACNGT	4 cut(s)	718, 832, 1256, 1658
TaiI	ACGT	1 cut(s)	1735
TaqI	TCGA	6 cut(s)	173, 299, 434, 676, 753, 1810
TauI	GCSGC	1 cut(s)	1577
TfiI	GAWTC	9 cut(s)	415, 499, 706, 1232, 1239, 1358, 1391, 1511, 1849
Tru1I	TTAA	5 cut(s)	15, 200, 572, 1134, 1760
Tru9I	TTAA	5 cut(s)	15, 200, 572, 1134, 1760
TscAI	CASTG	4 cut(s)	397, 484, 1035, 1470
TseFI	GTSAC	6 cut(s)	388, 536, 884, 942, 1026, 1423
TseI	GCWGC	4 cut(s)	799, 1033, 1083, 1313
Tsp45I	GTSAC	6 cut(s)	388, 536, 884, 942, 1026, 1423
TspDTI	ATGAA	8 cut(s)	326, 407, 491, 738, 922, 1059, 1194, 1398
TspGWI	ACGGA	2 cut(s)	1534, 1647
TspRI	CASTG	4 cut(s)	397, 484, 1035, 1470
Van91I	CCANNNNNTGG	1 cut(s)	1476
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	3 cut(s)	694, 789, 1526
VspI	ATTAAT	1 cut(s)	1134
XapI	RAATTY	3 cut(s)	1548, 1674, 1834
XceI	RCATGY	1 cut(s)	1774
XmnI	GAANNNNTTC	2 cut(s)	1639, 1701
XspI	CTAG	5 cut(s)	852, 1061, 1350, 1401, 1709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.