Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001314

Physical Location & Seq

Genomic Coordinates Forward (+)

20438977 .. 20446388

Gene Structure 7412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2748 bp

ATGATATTGCTTTCTCAGTTACAGCAAACTGAAGGTTTCAAGCATATGCCTGGGAACAAGTACAACGGTAATTCAGCCCACATCCCACCAACTCGAGTTGAACGGCTCTTGAGAGAAAGGGAGCTAAGGAAAAATAGCAAGGCCTTGAACTTGAATGAAACATTTGAACCTGAGTTGCAGTTAAGAGAAGATGAAAACTCAAATGCTGCCCATGTTGAACGATTATTGGAAGGGGCTGCAGCTGCAAGGGCGCTTAATGAGGGATACGAAAACCAAGACGGGAGGCCTAGCAGACAACGACTGTTGGTTGTGGCGAACAGGTTACCTGTCTCTGCAATTAGAAGAGGTGAAGATTCATGGTCTCTGGAGATGAGTGCAGGGGGTCTGGTCAGTGCACTTTTGGGTGTAAAGGAGTTTGAGGCAAGGTGGATTGGTTGGGCCGGGGTAAATGTGCCGGATGAAATTGGACAGAAGGCGCTTACTAGAGCTCTTGCTGACAAGAGATGTATTCCAGTTTTCCTTGACGAGGAGATTGTTCATCAATATTACAATGGCTATTGCAACAATATTTTGTGGCCCCTTTTCCATTACCTTGGACTTCCACAAGAAGATCGACTTGCCACCACCCGGAGTTTCCAGTCACAGTTTGCTGCATATAAGAAGGCAAATCAAATGTTTGCTGATGTGGTTAATGAGCACTATGAAGAGGGTGACGTAGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCAAAATGCTTGAAGGATTACGATAGTAAAATGAAAGTTGGTTGGTTTCTCCACACCCCTTTTCCTTCTTCTGAAATCCATAGGACATTGCCGGAGAGAGATCACGATCAGAACTACTACGTGCAGTTCTTGCAGCTGATTTATTTTCACACTTACGACTATGCACGGCACTTTGTTAGTGCTTGCACTCGCATTCTTGGACTAGAGGGTACACCTGAAGGAGTTGAGGATCAAGGGAGGCTTACTCGAGTGGCTGCGTTTCCTATTGGAATAGATTCAGACCGCTTCATACGTGGACTTGAGGTTCCTGACATCCAAAAACACATTAAGGAATTGAAAGAACGGTTCGCTGGGAGAAAGGTAATGCTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAGTTACTAGCGTTTGAAAAGTTTCTTGAGGAAAACCCAACTTGGCGTGAGAAAGTGGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCAGAGTATCAAAAACTTACAAGCCAGGTTCATGAAATTGTTGGGAGAATTAATGGCAGATTTGGAACTTTGATCGCTGTCCCAATACATCACCTGGATTGTTCTCTCGACTTTCATGCATTGTGTGCACTATATGCTGTAACTGATGTTGCACTTGTTACATCCCTGAGGGACGGAATGAATCTTGTCAGTTATGAGTTTGTGGCATGCCAGGATGCAAAGAGAGGGGTCCTTATTCTGAGTGAGTTTGCTGGTGCCGCACAGTCTTTAGGTGCTGGAGCAATTCTAGTGAACCCATGGAACATCACAGAAGTTGCCAATTCAATTGCTCAGGCATTGAATATGGACTCTGAAGAAAGAGAGAAGCGACATAAGCATAATTTTTCGCACGTGACAGCCCACACTGCACAGGAATGGGCCGAAACTTTTGTAAGTGAATTGAACGATACTGTTGTAGCGGCGCAATTACGGACCAGACAGGTGCCCCCGCCACTTGCAAACAAGGACGCAATTCAAAGTTATTTGCAAGCAAATAATCGATTGATCATACTGGGATTCAATGCGACATTAACTGAATCAGTGGACACACCTGAGAGGCGAGGTGATCAAATAAAAGAAATGGAACTTAAACTGCATCCTGAATTGAAAGAAACCTTGTCAGCACTCTGCAATGATCCAACAACAACTATTGTGGTCCTCAGTGGGAGTGAGAGAAAAGTCTTAGATAATAACTTTGGGGAGCTTGACATGTGGTTGGCAGCTGAAAACGGGATGTTTTTACGCCTTACAAAGGGAGACTGGATGACAACAATGCCTGAACATGTGAATATGGAATGGGTCAACAGTGTGGAGCATGTTTTTGAGTATTTCAAAGAGAGAACACCGCGATCACATTATGAACGTCGTCAAACTTCCCTTGTGTGGAATTATAAATATGCAGGTAGCCGGTCTGTTGAGGTTCGAGCAGTTGGTGTGACAAAGGGTGCAGCAATTGATCGTATATTGGGAGAGATAGTTCATAGTAAATCCATGACATCCCCCATTGATTATGTGCTGTGTATTGGACATTTTCTTGGGAAGGATGAAGATGTGTACACCTTTTTCGAGCCAGATCTTCCGCCTGATCCGAGTGGTCTTCCAAGAACCAAGATACCTGATGGACTAAAGCCTAACGAGAGGCGATCTTCTTTGAAGGCTCCGGCCATCAAAAGCGGCTCAAAATCGTCTCAGAGCAAAGCGCAACGGGTGCCTTTACCAAACCATGAGAAGAAAAATGCAAATCACAACACCACGAATCCACGATGGCCATCTCCAGAAAAGGTTTCGTGGAACGTACTTGATCTAAAGAAGGAGAACTACTACTCTTGCTCTGTCGGGCGGACTCGCACAAATGCTCGGTATGTACTTCAGTCCTCGGATGATGTTGTCTCGTTTCTGAAGGAATTGGCGGGTGCCTCTTCTGCAAGCGCTTCATCTTCCGGTTCAGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

916

Amino Acids

103.55

Weight (kDa)

6.34

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78580 AT1G78580 AT1G78580 AT1G78580
fragaria_vesca	FvH4_3g06590 FvH4_3g06590 FvH4_3g17650 FvH4_3g17650
malus_domestica	MD03G1250300.v1.1 MD10G1270400.v1.1 MD11G1270400.v1.1
prunus_persica	Prupe.4G071400_v2.0.a1 Prupe.4G071400_v2.0.a1 Prupe.4G071400_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1
pyrus_communis	pycom03g19800 pycom10g22630 pycom11g23920
rosa_chinensis	RchiOBHm_Chr5g0012561 RchiOBHm_Chr5g0029381
rosa_laevigata	RLG00000031925 RLG00000033160
rosa_multiflora	Rmu_sc0003577.1_g000012 Rmu_sc0004373.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050580 Rroxscaffold_1G00064100
rosa_rugosa	Rorug05G0002400 Rorug05G0002400 Rorug05G0002500 Rorug05G0002600 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000
rosa_samantha	Rh5AG096400 Rh5AG205600 Rh5BG092600 Rh5BG204200 Rh5CG105500 Rh5DG092100 Rh5DG207800
rosa_wichuraiana	Rw5G008440 Rw5G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2184
Acc36I	ACCTGC	1 cut(s)	2183
AccB1I	GGYRCC	5 cut(s)	723, 1508, 1735, 2500, 2705
AccII	CGCG	1 cut(s)	2140
AciI	CCGC	9 cut(s)	1033, 1512, 1712, 1742, 2138, 2372, 2466, 2632, 2702
AclWI	GGATC	3 cut(s)	987, 1922, 2372
AcoI	YGGCCR	2 cut(s)	2454, 2558
AcsI	RAATTY	1 cut(s)	1149
AcuI	CTGAAG	5 cut(s)	51, 987, 1626, 2645, 2711
AcvI	CACGTG	1 cut(s)	1645
AfaI	GTAC	5 cut(s)	62, 961, 2348, 2589, 2658
AfeI	AGCGCT	1 cut(s)	2722
AfiI	CCNNNNNNNGG	4 cut(s)	526, 627, 2044, 2175
AflIII	ACRYGT	2 cut(s)	2001, 2074
AjnI	CCWGG	4 cut(s)	49, 1278, 1347, 1464
AloI	GAACNNNNNNTCC	6 cut(s)	1038, 1070, 1237, 1269, 2253, 2285
AluBI	AGCT	6 cut(s)	124, 242, 488, 886, 1996, 2015
AluI	AGCT	6 cut(s)	124, 242, 488, 886, 1996, 2015
Alw21I	GWGCWC	4 cut(s)	397, 490, 699, 1384
Alw26I	GTCTC	5 cut(s)	334, 366, 2043, 2484, 2686
Alw44I	GTGCAC	2 cut(s)	393, 1380
AlwI	GGATC	3 cut(s)	987, 1922, 2372
Ama87I	CYCGRG	2 cut(s)	93, 996
Aor51HI	AGCGCT	1 cut(s)	2722
AoxI	GGCC	7 cut(s)	141, 284, 438, 575, 1671, 2454, 2558
ApaLI	GTGCAC	2 cut(s)	393, 1380
ApoI	RAATTY	1 cut(s)	1149
AseI	ATTAAT	1 cut(s)	1305
Asp700I	GAANNNNTTC	2 cut(s)	1024, 1179
AspLEI	GCGC	5 cut(s)	253, 478, 1717, 2494, 2723
AspS9I	GGNCC	6 cut(s)	438, 576, 1483, 1671, 1725, 1948
AsuC2I	CCSGG	2 cut(s)	442, 628
AsuHPI	GGTGA	4 cut(s)	359, 722, 1337, 1868
AvaI	CYCGRG	2 cut(s)	93, 996
AvaII	GGWCC	3 cut(s)	1483, 1725, 1948
AxyI	CCTNAGG	1 cut(s)	1421
BaeGI	GKGCMC	3 cut(s)	397, 1384, 1740
BaeI	ACNNNNGTAYC	2 cut(s)	1692, 1725
BalI	TGGCCA	1 cut(s)	2560
BanI	GGYRCC	5 cut(s)	723, 1508, 1735, 2500, 2705
BanII	GRGCYC	1 cut(s)	490
BarI	GAAGNNNNNNTAC	2 cut(s)	2594, 2626
BbrPI	CACGTG	1 cut(s)	1645
BbsI	GAAGAC	1 cut(s)	2381
Bbv12I	GWGCWC	4 cut(s)	397, 490, 699, 1384
BccI	CCATC	5 cut(s)	744, 2405, 2465, 2550, 2569
BceAI	ACGGC	2 cut(s)	119, 932
BcgI	CGANNNNNNTGC	2 cut(s)	1352, 1386
BciT130I	CCWGG	4 cut(s)	51, 1280, 1349, 1466
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	2 cut(s)	1797, 1858
BcnI	CCSGG	2 cut(s)	442, 628
BcoDI	GTCTC	5 cut(s)	334, 366, 2043, 2484, 2686
BfaI	CTAG	6 cut(s)	288, 483, 953, 1118, 1166, 1541
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	3 cut(s)	254, 479, 2724
BfuAI	ACCTGC	1 cut(s)	2183
BfuI	GTATCC	1 cut(s)	257
BglII	AGATCT	1 cut(s)	2365
Bme1390I	CCNGG	6 cut(s)	51, 442, 628, 1280, 1349, 1466
Bme18I	GGWCC	3 cut(s)	1483, 1725, 1948
BmeT110I	CYCGRG	2 cut(s)	93, 996
BmgT120I	GGNCC	6 cut(s)	438, 576, 1483, 1671, 1725, 1948
BmiI	GGNNCC	9 cut(s)	578, 725, 1056, 1484, 1510, 1737, 2451, 2502, 2707
BmrFI	CCNGG	6 cut(s)	51, 442, 628, 1280, 1349, 1466
BmrI	ACTGGG	1 cut(s)	1814
BmsI	GCATC	2 cut(s)	1459, 1897
BmuI	ACTGGG	1 cut(s)	1814
BpiI	GAAGAC	1 cut(s)	2381
BplI	GAGNNNNNCTC	2 cut(s)	979, 1011
BpmI	CTGGAG	3 cut(s)	386, 1551, 2550
Bpu10I	CCTNAGC	2 cut(s)	125, 1584
BpuEI	CTTGAG	3 cut(s)	130, 1070, 1205
BpuMI	CCSGG	2 cut(s)	442, 628
Bsa29I	ATCGAT	1 cut(s)	1792
BsaAI	YACGTR	3 cut(s)	871, 1043, 1645
BsaBI	GATNNNNATC	3 cut(s)	735, 855, 2560
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	5 cut(s)	50, 441, 592, 1550, 2667
BsaWI	WCCGGW	1 cut(s)	2732
BsaXI	ACNNNNNCTCC	2 cut(s)	2253, 2283
Bsc4I	CCNNNNNNNGG	4 cut(s)	526, 627, 2044, 2175
Bse118I	RCCGGY	1 cut(s)	2199
Bse1I	ACTGG	4 cut(s)	512, 637, 1809, 2057
Bse21I	CCTNAGG	1 cut(s)	1421
Bse3DI	GCAATG	2 cut(s)	836, 1930
Bse8I	GATNNNNATC	3 cut(s)	735, 855, 2560
BseBI	CCWGG	4 cut(s)	51, 1280, 1349, 1466
BseCI	ATCGAT	1 cut(s)	1792
BseDI	CCNNGG	5 cut(s)	50, 441, 592, 1550, 2667
BseJI	GATNNNNATC	3 cut(s)	735, 855, 2560
BseLI	CCNNNNNNNGG	4 cut(s)	526, 627, 2044, 2175
BseMI	GCAATG	2 cut(s)	836, 1930
BseMII	CTCAG	8 cut(s)	29, 162, 1412, 1484, 1598, 1836, 1966, 2495
BseNI	ACTGG	4 cut(s)	512, 637, 1809, 2057
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	3 cut(s)	397, 1384, 1740
BseYI	CCCAGC	1 cut(s)	1100
BsgI	GTGCAG	4 cut(s)	396, 893, 1644, 2259
Bsh1236I	CGCG	1 cut(s)	2140
BshFI	GGCC	7 cut(s)	143, 286, 440, 577, 1673, 2456, 2560
BshNI	GGYRCC	5 cut(s)	723, 1508, 1735, 2500, 2705
BshVI	ATCGAT	1 cut(s)	1792
BsiHKAI	GWGCWC	4 cut(s)	397, 490, 699, 1384
BsiHKCI	CYCGRG	2 cut(s)	93, 996
BsiSI	CCGG	7 cut(s)	441, 455, 628, 842, 2200, 2453, 2733
BslFI	GGGAC	2 cut(s)	1319, 1439
BslI	CCNNNNNNNGG	4 cut(s)	526, 627, 2044, 2175
BsmAI	GTCTC	5 cut(s)	334, 366, 2043, 2484, 2686
BsmBI	CGTCTC	1 cut(s)	2484
BsmFI	GGGAC	2 cut(s)	1319, 1439
BsmI	GAATGC	1 cut(s)	942
BsnI	GGCC	7 cut(s)	143, 286, 440, 577, 1673, 2456, 2560
Bso31I	GGTCTC	1 cut(s)	366
BsoBI	CYCGRG	2 cut(s)	93, 996
Bsp1286I	GDGCHC	5 cut(s)	397, 490, 699, 1384, 1740
Bsp1407I	TGTACA	1 cut(s)	2346
Bsp19I	CCATGG	1 cut(s)	1550
BspACI	CCGC	9 cut(s)	1033, 1512, 1712, 1742, 2138, 2372, 2466, 2632, 2702
BspANI	GGCC	7 cut(s)	143, 286, 440, 577, 1673, 2456, 2560
BspCNI	CTCAG	8 cut(s)	28, 163, 1413, 1485, 1597, 1837, 1965, 2494
BspDI	ATCGAT	1 cut(s)	1792
BspFNI	CGCG	1 cut(s)	2140
BspHI	TCATGA	1 cut(s)	1285
BspLI	GGNNCC	9 cut(s)	578, 725, 1056, 1484, 1510, 1737, 2451, 2502, 2707
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	2183
BspPI	GGATC	3 cut(s)	987, 1922, 2372
BspT107I	GGYRCC	5 cut(s)	723, 1508, 1735, 2500, 2705
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	2 cut(s)	836, 1930
BsrFI	RCCGGY	1 cut(s)	2199
BsrGI	TGTACA	1 cut(s)	2346
BsrI	ACTGG	4 cut(s)	512, 637, 1809, 2057
BssAI	RCCGGY	1 cut(s)	2199
BssECI	CCNNGG	5 cut(s)	50, 441, 592, 1550, 2667
BssT1I	CCWWGG	2 cut(s)	592, 1550
Bst2UI	CCWGG	4 cut(s)	51, 1280, 1349, 1466
Bst4CI	ACNGT	7 cut(s)	68, 303, 645, 1095, 1518, 1705, 2099
Bst6I	CTCTTC	3 cut(s)	337, 699, 2716
BstAPI	GCANNNNNTGC	4 cut(s)	880, 1379, 1388, 2500
BstAUI	TGTACA	1 cut(s)	2346
BstBAI	YACGTR	3 cut(s)	871, 1043, 1645
BstC8I	GCNNGC	4 cut(s)	934, 1462, 1782, 2719
BstDSI	CCRYGG	1 cut(s)	1550
BstEII	GGTNACC	1 cut(s)	321
BstENI	CCTNNNNNAGG	2 cut(s)	524, 2042
BstFNI	CGCG	1 cut(s)	2140
BstH2I	RGCGCY	3 cut(s)	254, 479, 2724
BstHHI	GCGC	5 cut(s)	253, 478, 1717, 2494, 2723
BstMAI	GTCTC	5 cut(s)	334, 366, 2043, 2484, 2686
BstNI	CCWGG	4 cut(s)	51, 1280, 1349, 1466
BstNSI	RCATGY	4 cut(s)	1464, 2005, 2078, 2111
BstPI	GGTNACC	1 cut(s)	321
BstSCI	CCNGG	6 cut(s)	49, 440, 626, 1278, 1347, 1464
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	3 cut(s)	397, 1384, 1740
BstUI	CGCG	1 cut(s)	2140
BstV2I	GAAGAC	1 cut(s)	2381
BstX2I	RGATCY	1 cut(s)	2365
BstXI	CCANNNNNNTGG	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	2365
Bsu15I	ATCGAT	1 cut(s)	1792
Bsu36I	CCTNAGG	1 cut(s)	1421
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	7 cut(s)	143, 286, 440, 577, 1673, 2456, 2560
BsuTUI	ATCGAT	1 cut(s)	1792
BtgI	CCRYGG	1 cut(s)	1550
BtsI	GCAGTG	2 cut(s)	1239, 1656
BtsIMutI	CAGTG	6 cut(s)	397, 1239, 1656, 1839, 1960, 2104
BveI	ACCTGC	1 cut(s)	2183
Cac8I	GCNNGC	4 cut(s)	934, 1462, 1782, 2719
CciI	TCATGA	1 cut(s)	1285
CfoI	GCGC	5 cut(s)	253, 478, 1717, 2494, 2723
Cfr10I	RCCGGY	1 cut(s)	2199
Cfr13I	GGNCC	6 cut(s)	438, 576, 1483, 1671, 1725, 1948
ClaI	ATCGAT	1 cut(s)	1792
CseI	GACGC	1 cut(s)	1769
Csp6I	GTAC	5 cut(s)	61, 960, 2347, 2588, 2657
CspCI	CAANNNNNGTGG	2 cut(s)	1926, 1961
CviQI	GTAC	5 cut(s)	61, 960, 2347, 2588, 2657
EaeI	YGGCCR	2 cut(s)	2454, 2558
Eam1104I	CTCTTC	3 cut(s)	337, 699, 2716
EarI	CTCTTC	3 cut(s)	337, 699, 2716
EciI	GGCGGA	2 cut(s)	2361, 2647
Ecl136II	GAGCTC	1 cut(s)	488
Eco130I	CCWWGG	2 cut(s)	592, 1550
Eco147I	AGGCCT	2 cut(s)	143, 286
Eco24I	GRGCYC	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	1483, 1725, 1948
Eco47III	AGCGCT	1 cut(s)	2722
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	5 cut(s)	51, 987, 1626, 2645, 2711
Eco72I	CACGTG	1 cut(s)	1645
Eco81I	CCTNAGG	1 cut(s)	1421
Eco88I	CYCGRG	2 cut(s)	93, 996
Eco91I	GGTNACC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	488
EcoNI	CCTNNNNNAGG	2 cut(s)	524, 2042
EcoO109I	RGGNCCY	1 cut(s)	1483
EcoO65I	GGTNACC	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	1149
EcoRII	CCWGG	4 cut(s)	49, 1278, 1347, 1464
EcoT14I	CCWWGG	2 cut(s)	592, 1550
EcoT22I	ATGCAT	1 cut(s)	1375
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	592, 1550
Esp3I	CGTCTC	1 cut(s)	2484
FalI	AAGNNNNNCTT	4 cut(s)	600, 632, 975, 1007
FaqI	GGGAC	2 cut(s)	1319, 1439
FauI	CCCGC	2 cut(s)	1749, 2695
FauNDI	CATATG	1 cut(s)	45
FbaI	TGATCA	2 cut(s)	1797, 1858
FriOI	GRGCYC	1 cut(s)	490
FspBI	CTAG	6 cut(s)	288, 483, 953, 1118, 1166, 1541
GlaI	GCGC	5 cut(s)	252, 477, 1716, 2493, 2722
GsaI	CCCAGC	1 cut(s)	1104
GsuI	CTGGAG	3 cut(s)	386, 1551, 2550
HaeII	RGCGCY	3 cut(s)	254, 479, 2724
HaeIII	GGCC	7 cut(s)	143, 286, 440, 577, 1673, 2456, 2560
HapII	CCGG	7 cut(s)	441, 455, 628, 842, 2200, 2453, 2733
HgaI	GACGC	1 cut(s)	1769
HhaI	GCGC	5 cut(s)	253, 478, 1717, 2494, 2723
Hin6I	GCGC	5 cut(s)	251, 476, 1715, 2492, 2721
HinP1I	GCGC	5 cut(s)	251, 476, 1715, 2492, 2721
HincII	GTYRAC	1 cut(s)	2095
HindII	GTYRAC	1 cut(s)	2095
HinfI	GANTC	8 cut(s)	353, 1025, 1435, 1601, 1809, 1829, 2548, 2635
HpaII	CCGG	7 cut(s)	441, 455, 628, 842, 2200, 2453, 2733
HphI	GGTGA	4 cut(s)	359, 722, 1337, 1868
Hpy166II	GTNNAC	9 cut(s)	395, 962, 1046, 1382, 1546, 1837, 2095, 2347, 2349
Hpy8I	GTNNAC	9 cut(s)	395, 962, 1046, 1382, 1546, 1837, 2095, 2347, 2349
Hpy99I	CGWCG	1 cut(s)	2160
HpyCH4III	ACNGT	7 cut(s)	68, 303, 645, 1095, 1518, 1705, 2099
HpyCH4IV	ACGT	6 cut(s)	714, 870, 1042, 1644, 2155, 2586
HpySE526I	ACGT	6 cut(s)	714, 870, 1042, 1644, 2155, 2586
HspAI	GCGC	5 cut(s)	251, 476, 1715, 2492, 2721
Ksp22I	TGATCA	2 cut(s)	1797, 1858
LmnI	GCTCC	5 cut(s)	121, 1532, 1993, 2104, 2455
LweI	GCATC	2 cut(s)	1459, 1897
MaeI	CTAG	6 cut(s)	288, 483, 953, 1118, 1166, 1541
MaeII	ACGT	6 cut(s)	714, 870, 1042, 1644, 2155, 2586
MaeIII	GTNAC	9 cut(s)	18, 321, 639, 710, 1161, 1393, 1411, 1645, 2227
MfeI	CAATTG	2 cut(s)	1578, 2244
MflI	RGATCY	1 cut(s)	2365
MhlI	GDGCHC	5 cut(s)	397, 490, 699, 1384, 1740
MlsI	TGGCCA	1 cut(s)	2560
MluNI	TGGCCA	1 cut(s)	2560
MlyI	GAGTC	2 cut(s)	1595, 2629
MmeI	TCCRAC	1 cut(s)	1955
Mox20I	TGGCCA	1 cut(s)	2560
Mph1103I	ATGCAT	1 cut(s)	1375
MroXI	GAANNNNTTC	2 cut(s)	1024, 1179
MscI	TGGCCA	1 cut(s)	2560
MseI	TTAA	8 cut(s)	182, 255, 690, 1077, 1143, 1305, 1823, 1881
MslI	CAYNNNNRTG	1 cut(s)	1666
Msp20I	TGGCCA	1 cut(s)	2560
MspA1I	CMGCKG	3 cut(s)	242, 886, 2015
MspI	CCGG	7 cut(s)	441, 455, 628, 842, 2200, 2453, 2733
MspR9I	CCNGG	6 cut(s)	51, 442, 628, 1280, 1349, 1466
MunI	CAATTG	2 cut(s)	1578, 2244
Mva1269I	GAATGC	1 cut(s)	942
MvaI	CCWGG	4 cut(s)	51, 1280, 1349, 1466
MvnI	CGCG	1 cut(s)	2140
NciI	CCSGG	2 cut(s)	442, 628
NcoI	CCATGG	1 cut(s)	1550
NdeI	CATATG	1 cut(s)	45
NlaIV	GGNNCC	9 cut(s)	578, 725, 1056, 1484, 1510, 1737, 2451, 2502, 2707
NmuCI	GTSAC	4 cut(s)	639, 710, 1645, 2227
NsiI	ATGCAT	1 cut(s)	1375
NspI	RCATGY	4 cut(s)	1464, 2005, 2078, 2111
PaeI	GCATGC	1 cut(s)	1464
PaeR7I	CTCGAG	2 cut(s)	93, 996
PagI	TCATGA	1 cut(s)	1285
PceI	AGGCCT	2 cut(s)	143, 286
PciI	ACATGT	2 cut(s)	2001, 2074
PctI	GAATGC	1 cut(s)	942
PdmI	GAANNNNTTC	2 cut(s)	1024, 1179
PfeI	GAWTC	6 cut(s)	353, 1025, 1435, 1809, 1829, 2548
PleI	GAGTC	2 cut(s)	1595, 2629
PmaCI	CACGTG	1 cut(s)	1645
PmlI	CACGTG	1 cut(s)	1645
PpsI	GAGTC	2 cut(s)	1595, 2629
Ppu21I	YACGTR	3 cut(s)	871, 1043, 1645
PpuMI	RGGWCCY	1 cut(s)	1483
PscI	ACATGT	2 cut(s)	2001, 2074
PshBI	ATTAAT	1 cut(s)	1305
PsiI	TTATAA	1 cut(s)	2184
Psp124BI	GAGCTC	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	1483
Psp6I	CCWGG	4 cut(s)	49, 1278, 1347, 1464
PspCI	CACGTG	1 cut(s)	1645
PspEI	GGTNACC	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	1100
PspGI	CCWGG	4 cut(s)	49, 1278, 1347, 1464
PspN4I	GGNNCC	9 cut(s)	578, 725, 1056, 1484, 1510, 1737, 2451, 2502, 2707
PspPI	GGNCC	6 cut(s)	438, 576, 1483, 1671, 1725, 1948
PspPPI	RGGWCCY	1 cut(s)	1483
PspXI	VCTCGAGB	2 cut(s)	93, 996
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	2365
PvuII	CAGCTG	3 cut(s)	242, 886, 2015
RsaI	GTAC	5 cut(s)	62, 961, 2348, 2589, 2658
RsaNI	GTAC	5 cut(s)	61, 960, 2347, 2588, 2657
RseI	CAYNNNNRTG	1 cut(s)	1666
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	8 cut(s)	182, 255, 690, 1077, 1143, 1305, 1823, 1881
Sau96I	GGNCC	6 cut(s)	438, 576, 1483, 1671, 1725, 1948
SchI	GAGTC	2 cut(s)	1595, 2629
ScrFI	CCNGG	6 cut(s)	51, 442, 628, 1280, 1349, 1466
SduI	GDGCHC	5 cut(s)	397, 490, 699, 1384, 1740
SfaNI	GCATC	2 cut(s)	1459, 1897
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	2 cut(s)	93, 996
SinI	GGWCC	3 cut(s)	1483, 1725, 1948
SlaI	CTCGAG	2 cut(s)	93, 996
SmiMI	CAYNNNNRTG	1 cut(s)	1666
SmlI	CTYRAG	5 cut(s)	93, 109, 996, 1049, 1184
SmoI	CTYRAG	5 cut(s)	93, 109, 996, 1049, 1184
SphI	GCATGC	1 cut(s)	1464
SseBI	AGGCCT	2 cut(s)	143, 286
SsiI	CCGC	9 cut(s)	1033, 1512, 1712, 1742, 2138, 2372, 2466, 2632, 2702
SspI	AATATT	2 cut(s)	545, 568
SspMI	CTAG	6 cut(s)	288, 483, 953, 1118, 1166, 1541
SstI	GAGCTC	1 cut(s)	490
StuI	AGGCCT	2 cut(s)	143, 286
StyD4I	CCNGG	6 cut(s)	49, 440, 626, 1278, 1347, 1464
StyI	CCWWGG	2 cut(s)	592, 1550
TaaI	ACNGT	7 cut(s)	68, 303, 645, 1095, 1518, 1705, 2099
TaiI	ACGT	6 cut(s)	717, 873, 1045, 1647, 2158, 2589
TaqI	TCGA	7 cut(s)	94, 613, 997, 1362, 1792, 2215, 2358
TatI	WGTACW	3 cut(s)	60, 2346, 2656
TauI	GCSGC	3 cut(s)	1514, 1715, 2469
TfiI	GAWTC	6 cut(s)	353, 1025, 1435, 1809, 1829, 2548
Tru1I	TTAA	8 cut(s)	182, 255, 690, 1077, 1143, 1305, 1823, 1881
Tru9I	TTAA	8 cut(s)	182, 255, 690, 1077, 1143, 1305, 1823, 1881
TscAI	CASTG	6 cut(s)	397, 1239, 1663, 1839, 1960, 2104
TseFI	GTSAC	4 cut(s)	639, 710, 1645, 2227
Tsp45I	GTSAC	4 cut(s)	639, 710, 1645, 2227
TspGWI	ACGGA	2 cut(s)	1443, 1738
TspRI	CASTG	6 cut(s)	397, 1239, 1663, 1839, 1960, 2104
VneI	GTGCAC	2 cut(s)	393, 1380
VpaK11BI	GGWCC	3 cut(s)	1483, 1725, 1948
VspI	ATTAAT	1 cut(s)	1305
XagI	CCTNNNNNAGG	2 cut(s)	524, 2042
XapI	RAATTY	1 cut(s)	1149
XceI	RCATGY	4 cut(s)	1464, 2005, 2078, 2111
XhoI	CTCGAG	2 cut(s)	93, 996
XmnI	GAANNNNTTC	2 cut(s)	1024, 1179
XspI	CTAG	6 cut(s)	288, 483, 953, 1118, 1166, 1541
Zsp2I	ATGCAT	1 cut(s)	1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.