Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001314

Physical Location & Seq

Genomic Coordinates Reverse (-)

23054925 .. 23068937

Gene Structure 14013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGTTTGCAGATGTAGTTAATGAGCACTATGAAGAGGGTGATGTTGTTTGGTGCCATGACTACCATCTTATGTTTCTTCCAAAATGCTTGAAGGAATATAACAGCAAAATGAAAGTCGGCTGGTTTCTTCACACTCCCTTTCCTTCCTCTGAAATTCATAGGACACTGCCATCACGATCAGAGCTCCTGCGCTCAGTTCTTGCAGCTGATTTAGTTGGTTTTCACACTTATGACTATGCACGACACTTTGTTAGTGCTTGCACTCGCATTCTTGGGCTTGAGGGTACGCCTGAAGGAGTTGAGGATCAAGGAAGGCTTACTCGAGTGGCTGCGTTTCCTATTGGAATAGATTCAGATCGCTTCATTCGAGCACTTGAGGTTACTCAAGTCCAAGAACACATTAGGGAACTGAAAGACAGATTTGCAGGGCGAAAGGTAATGTTGGGTGTTGATCGGCTTGATATGATTAAAGGAATCCCTCAAAAGATACTGGCGTTTGAAAAGTTTCTTGAGGAAAACCCAATTTGGCGTGACAAAGTGGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCTGAGTATCAGAAACTTACAAGTCAGGTTCATGAAATTGTTGGACGAATTAATGGCAGATTTGGAAGTTTGACCGCTGTCCCTATACATCACCTGGATCGTTCTCTCGAATTTCATGCATTATGTGCACTGTATGCTGTTACTGACGTAGCACTTGTCACATCCCTCAGGGATGGAATGAATCTTGTTAGTTATGAATATGTGGCATGCCAAGATGCAAAGAAAGGGGTCCTTATCCTTAGTGAGTTTGCTGGTGCCGCACAGTCTCTAGGTGCCGGAGCAATTCTAGTGAACCCATGGAACATCACAGAAGTTGCCAATTCAATTGCCCAAGCATTGAATATGTCCTCTGAAGAGAGAGAGAAGCGACATAGGCATAACTTTGCACATGTGACAACCCACACTGCCCAGGAATGGGCTGAAACTTTTGTAAGTGAGCTGAATGATACTGTTGTAGAGGCGCAAATACGGACGAGACAGGTACCACCACCACTTCCAAACAGGGAGACAATTCAACGTTACTTGCGAGCAAACAATCGATTGCTCATACTGGGATTCAATGCGACTTTAACTGAACCAGTGGACACACCTGAGAGACGAGGCGATCAAATAAAAGAAATGGAACTAAAACTGCATCCAGATTTGATAGAACCCTTGACAGCACTCTGCAATGATCCAAACACAACTATTGTTGTCCTCAGTGGAAGTGACAGGGCTACCTTAGACGAAAACTTTTTACCATACTTTGGGGAGCTTGGCATGTGGTTGGCAGCTGAAAATGGAATGTTTTTACGTGTTACAAAGGGAGGATGGATGACAACAATGCCTGAACTTTCGAATATGGAATGGGTCGAAAGTGTGCAGCATGTCTTTGAGTATTTTACAGAGAGAACACCCCGGTCACACTTCGAATGTCGTGAAACTTCCCTCGTGTGGAATTACAAATATGCAGATGTTGATTTTGGAAGACTTCAAGCGAGAGATATGTTACAGCATCTCTGGACTGGTCCAATTTCTAATGCATCTGTTGACGTTGTTCAAGGTAGCCGGTCTGTGGAGGTGCGAGCAGTTGGTGTCACAAAGGGTGCAGCAATTGACCGTATATTGGGAGAAATAGTTCACAGTAAATCCATGACATCCCCCATTGATTATGTACTGTGCATTGGGCATTTTCTTGGGAAGGATGAAGATGTGTACTCGTTTTTCGAGCCAGATCCCCCGACTGACAATATTGGTCTTCCAAGAAGCAAGATAACTGACGGACTAAAGTCACCTGGTGAGAGAAGATCTTCCTTGAAGCTTCCAGCAAATAAAAGTGGGTCGAAATCATCGCAGAGCAAGACACAACGACCTTTACCAAATCCTGAGAAGAAATCTGCTGTCTCTGGGAGTGTAAGGTGGCCATCTCCAGAAAAGATTTCTTGGAATGTACTAGACCTCAAGAAGGAGAACTACTACTCTTGTTCTGTTGGGAGGACTCGTACAAATGCTCGATTTCTACTTCAGTCGTCAGATGATGTTGTCTCATTTCTGAAGGAATTGGCTGATGCATCTTCAGATTTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

715

Amino Acids

80.67

Weight (kDa)

6.03

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_20	PF00982	1 - 341	4.5e-157	Glycosyltransferase family 20
Trehalose_PPase	PF02358	398 - 604	6.2e-58	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78580 AT1G78580 AT1G78580 AT1G78580
fragaria_vesca	FvH4_3g06590 FvH4_3g06590 FvH4_3g17650 FvH4_3g17650
malus_domestica	MD03G1250300.v1.1 MD10G1270400.v1.1 MD11G1270400.v1.1
prunus_persica	Prupe.4G071400_v2.0.a1 Prupe.4G071400_v2.0.a1 Prupe.4G071400_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1
pyrus_communis	pycom03g19800 pycom10g22630 pycom11g23920
rosa_chinensis	RchiOBHm_Chr5g0012561 RchiOBHm_Chr5g0029381
rosa_laevigata	RLG00000031925 RLG00000033160
rosa_multiflora	Rmu_sc0003577.1_g000012 Rmu_sc0004373.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050580 Rroxscaffold_1G00064100
rosa_rugosa	Rorug05G0002400 Rorug05G0002400 Rorug05G0002500 Rorug05G0002600 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000
rosa_samantha	Rh5AG096400 Rh5AG205600 Rh5BG092600 Rh5BG204200 Rh5CG105500 Rh5DG092100 Rh5DG207800
rosa_wichuraiana	Rw5G008440 Rw5G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1060
AccB1I	GGYRCC	4 cut(s)	51, 833, 851, 1060
AccB7I	CCANNNNNTGG	1 cut(s)	1325
AciI	CCGC	2 cut(s)	654, 837
AclI	AACGTT	1 cut(s)	1096
AclWI	GGATC	4 cut(s)	312, 684, 1247, 1787
AcoI	YGGCCR	1 cut(s)	1979
AcsI	RAATTY	2 cut(s)	153, 689
AcuI	CTGAAG	5 cut(s)	312, 951, 2066, 2118, 2132
AdeI	CACNNNGTG	1 cut(s)	1856
AfaI	GTAC	6 cut(s)	286, 1062, 1734, 1775, 2010, 2062
AfiI	CCNNNNNNNGG	7 cut(s)	993, 994, 1325, 1512, 1633, 1684, 2023
AflIII	ACRYGT	2 cut(s)	967, 1372
AjnI	CCWGG	3 cut(s)	672, 987, 1852
AloI	GAACNNNNNNTCC	4 cut(s)	562, 594, 1680, 1712
AluBI	AGCT	6 cut(s)	184, 206, 1018, 1333, 1352, 1879
AluI	AGCT	6 cut(s)	184, 206, 1018, 1333, 1352, 1879
Alw21I	GWGCWC	4 cut(s)	27, 186, 373, 709
Alw26I	GTCTC	6 cut(s)	849, 1048, 1079, 1168, 1966, 2107
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	4 cut(s)	312, 684, 1247, 1787
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	1 cut(s)	1979
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	6 cut(s)	203, 329, 547, 1349, 1441, 1667
ApoI	RAATTY	2 cut(s)	153, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	99, 131
AseI	ATTAAT	1 cut(s)	630
Asp700I	GAANNNNTTC	4 cut(s)	349, 504, 1695, 1867
Asp718I	GGTACC	1 cut(s)	1060
AspLEI	GCGC	2 cut(s)	192, 1042
AspS9I	GGNCC	2 cut(s)	808, 1586
AsuC2I	CCSGG	1 cut(s)	1477
AsuHPI	GGTGA	4 cut(s)	50, 662, 1842, 1868
AsuII	TTCGAA	2 cut(s)	1415, 1488
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	2 cut(s)	808, 1586
AxyI	CCTNAGG	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	709
BaeI	ACNNNNGTAYC	4 cut(s)	479, 512, 1017, 1050
BalI	TGGCCA	1 cut(s)	1981
BanI	GGYRCC	4 cut(s)	51, 833, 851, 1060
BanII	GRGCYC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	2015, 2047
BauI	CACGAG	1 cut(s)	1508
BbsI	GAAGAC	2 cut(s)	1552, 1808
Bbv12I	GWGCWC	4 cut(s)	27, 186, 373, 709
BbvI	GCAGC	6 cut(s)	215, 316, 534, 1361, 1453, 1679
BccI	CCATC	5 cut(s)	72, 178, 746, 1383, 1990
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	3 cut(s)	674, 989, 1854
BcnI	CCSGG	1 cut(s)	1477
BcoDI	GTCTC	6 cut(s)	849, 1048, 1079, 1168, 1966, 2107
BfaI	CTAG	3 cut(s)	848, 866, 2012
BglII	AGATCT	1 cut(s)	1865
BisI	GCNGC	7 cut(s)	204, 330, 548, 837, 1350, 1442, 1668
BlsI	GCNGC	7 cut(s)	205, 331, 549, 838, 1351, 1443, 1669
Bme1390I	CCNGG	4 cut(s)	674, 989, 1477, 1854
Bme18I	GGWCC	2 cut(s)	808, 1586
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	808, 1586
BmiI	GGNNCC	5 cut(s)	53, 809, 835, 853, 1062
BmrFI	CCNGG	4 cut(s)	674, 989, 1477, 1854
BmrI	ACTGGG	1 cut(s)	1139
BmsI	GCATC	6 cut(s)	784, 1222, 1582, 1610, 2116, 2138
BmuI	ACTGGG	1 cut(s)	1139
BoxI	GACNNNNGTC	2 cut(s)	656, 1846
BpiI	GAAGAC	2 cut(s)	1552, 1808
BpmI	CTGGAG	1 cut(s)	1971
Bpu14I	TTCGAA	2 cut(s)	1415, 1488
BpuEI	CTTGAG	5 cut(s)	299, 369, 395, 530, 2003
BpuMI	CCSGG	1 cut(s)	1477
Bsa29I	ATCGAT	1 cut(s)	1117
BsaAI	YACGTR	1 cut(s)	1373
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	875, 987, 1475
BsaXI	ACNNNNNCTCC	4 cut(s)	1680, 1710, 2044, 2074
Bsc4I	CCNNNNNNNGG	7 cut(s)	993, 994, 1325, 1512, 1633, 1684, 2023
Bse118I	RCCGGY	1 cut(s)	1626
Bse1I	ACTGG	4 cut(s)	495, 1134, 1157, 1588
Bse21I	CCTNAGG	1 cut(s)	746
Bse3DI	GCAATG	1 cut(s)	1255
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	674, 989, 1854
BseCI	ATCGAT	1 cut(s)	1117
BseDI	CCNNGG	3 cut(s)	875, 987, 1475
BseGI	GGATG	7 cut(s)	740, 757, 1213, 1394, 1398, 1715, 1768
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	7 cut(s)	993, 994, 1325, 1512, 1633, 1684, 2023
BseMI	GCAATG	1 cut(s)	1255
BseMII	CTCAG	6 cut(s)	207, 573, 760, 1161, 1291, 1935
BseNI	ACTGG	4 cut(s)	495, 1134, 1157, 1588
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	6 cut(s)	215, 316, 534, 1361, 1453, 1679
BsgI	GTGCAG	2 cut(s)	1460, 1686
BshFI	GGCC	1 cut(s)	1981
BshNI	GGYRCC	4 cut(s)	51, 833, 851, 1060
BshVI	ATCGAT	1 cut(s)	1117
BsiHKAI	GWGCWC	4 cut(s)	27, 186, 373, 709
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	855, 1477, 1627
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	7 cut(s)	993, 994, 1325, 1512, 1633, 1684, 2023
BsmAI	GTCTC	6 cut(s)	849, 1048, 1079, 1168, 1966, 2107
BsmBI	CGTCTC	1 cut(s)	1168
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	1981
BsoBI	CYCGRG	1 cut(s)	321
Bsp119I	TTCGAA	2 cut(s)	1415, 1488
Bsp1286I	GDGCHC	4 cut(s)	27, 186, 373, 709
Bsp143I	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
Bsp19I	CCATGG	1 cut(s)	875
BspACI	CCGC	2 cut(s)	654, 837
BspANI	GGCC	1 cut(s)	1981
BspCNI	CTCAG	6 cut(s)	206, 574, 759, 1162, 1290, 1936
BspDI	ATCGAT	1 cut(s)	1117
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	5 cut(s)	53, 809, 835, 853, 1062
BspPI	GGATC	4 cut(s)	312, 684, 1247, 1787
BspT104I	TTCGAA	2 cut(s)	1415, 1488
BspT107I	GGYRCC	4 cut(s)	51, 833, 851, 1060
BsrDI	GCAATG	1 cut(s)	1255
BsrFI	RCCGGY	1 cut(s)	1626
BsrI	ACTGG	4 cut(s)	495, 1134, 1157, 1588
BssAI	RCCGGY	1 cut(s)	1626
BssECI	CCNNGG	3 cut(s)	875, 987, 1475
BssMI	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
BssSI	CACGAG	1 cut(s)	1508
BssT1I	CCWWGG	1 cut(s)	875
Bst2BI	CACGAG	1 cut(s)	1508
Bst2UI	CCWGG	3 cut(s)	674, 989, 1854
Bst4CI	ACNGT	6 cut(s)	711, 843, 1030, 1679, 1703, 1737
Bst6I	CTCTTC	2 cut(s)	27, 927
BstAPI	GCANNNNNTGC	2 cut(s)	704, 713
BstBAI	YACGTR	1 cut(s)	1373
BstBI	TTCGAA	2 cut(s)	1415, 1488
BstC8I	GCNNGC	4 cut(s)	259, 787, 1107, 1644
BstDEI	CTNAG	8 cut(s)	193, 582, 746, 818, 1170, 1277, 1300, 1944
BstDSI	CCRYGG	1 cut(s)	875
BstENI	CCTNNNNNAGG	1 cut(s)	2021
BstF5I	GGATG	7 cut(s)	740, 757, 1213, 1394, 1398, 1715, 1768
BstHHI	GCGC	2 cut(s)	192, 1042
BstKTI	GATC	9 cut(s)	179, 307, 358, 454, 679, 1186, 1255, 1795, 1868
BstMAI	GTCTC	6 cut(s)	849, 1048, 1079, 1168, 1966, 2107
BstMBI	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
BstMWI	GCNNNNNNNGC	4 cut(s)	704, 713, 836, 952
BstNI	CCWGG	3 cut(s)	674, 989, 1854
BstNSI	RCATGY	4 cut(s)	789, 971, 1342, 1448
BstPAI	GACNNNNGTC	2 cut(s)	656, 1846
BstSCI	CCNGG	4 cut(s)	672, 987, 1475, 1852
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	6 cut(s)	215, 316, 534, 1361, 1453, 1679
BstV2I	GAAGAC	2 cut(s)	1552, 1808
BstX2I	RGATCY	2 cut(s)	1792, 1865
BstYI	RGATCY	2 cut(s)	1792, 1865
Bsu15I	ATCGAT	1 cut(s)	1117
Bsu36I	CCTNAGG	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	1981
BsuTUI	ATCGAT	1 cut(s)	1117
BtgI	CCRYGG	1 cut(s)	875
BtgZI	GCGATG	1 cut(s)	1893
BtsCI	GGATG	7 cut(s)	740, 757, 1213, 1394, 1398, 1715, 1768
BtsI	GCAGTG	3 cut(s)	164, 564, 981
BtsIMutI	CAGTG	6 cut(s)	164, 564, 707, 981, 1164, 1285
Cac8I	GCNNGC	4 cut(s)	259, 787, 1107, 1644
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	2 cut(s)	192, 1042
Cfr10I	RCCGGY	1 cut(s)	1626
Cfr13I	GGNCC	2 cut(s)	808, 1586
ClaI	ATCGAT	1 cut(s)	1117
CsiI	ACCWGGT	1 cut(s)	1852
Csp6I	GTAC	6 cut(s)	285, 1061, 1733, 1774, 2009, 2061
CviAII	CATG	9 cut(s)	56, 611, 695, 786, 876, 968, 1339, 1445, 1711
CviQI	GTAC	6 cut(s)	285, 1061, 1733, 1774, 2009, 2061
DdeI	CTNAG	8 cut(s)	193, 582, 746, 818, 1170, 1277, 1300, 1944
DpnI	GATC	9 cut(s)	178, 306, 357, 453, 678, 1185, 1254, 1794, 1867
DpnII	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
DraIII	CACNNNGTG	1 cut(s)	1856
EaeI	YGGCCR	1 cut(s)	1979
Eam1104I	CTCTTC	2 cut(s)	27, 927
EarI	CTCTTC	2 cut(s)	27, 927
Ecl136II	GAGCTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	875
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	808, 1586
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	5 cut(s)	312, 951, 2066, 2118, 2132
Eco81I	CCTNAGG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	2021
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRII	CCWGG	3 cut(s)	672, 987, 1852
EcoT14I	CCWWGG	1 cut(s)	875
EcoT22I	ATGCAT	3 cut(s)	700, 1603, 2131
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	875
Esp3I	CGTCTC	1 cut(s)	1168
FaeI	CATG	9 cut(s)	59, 614, 698, 789, 879, 971, 1342, 1448, 1714
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 795, 827
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	9 cut(s)	55, 610, 694, 785, 875, 967, 1338, 1444, 1710
Fnu4HI	GCNGC	7 cut(s)	204, 330, 548, 837, 1350, 1442, 1668
FokI	GGATG	7 cut(s)	727, 764, 1200, 1401, 1405, 1702, 1775
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	204, 330, 548, 837, 1350, 1442, 1668
FspBI	CTAG	3 cut(s)	848, 866, 2012
GlaI	GCGC	2 cut(s)	191, 1041
GluI	GCNGC	7 cut(s)	204, 330, 548, 837, 1350, 1442, 1668
GsuI	CTGGAG	1 cut(s)	1971
HaeIII	GGCC	1 cut(s)	1981
HapII	CCGG	3 cut(s)	855, 1477, 1627
HhaI	GCGC	2 cut(s)	192, 1042
Hin1II	CATG	9 cut(s)	59, 614, 698, 789, 879, 971, 1342, 1448, 1714
Hin6I	GCGC	2 cut(s)	190, 1040
HinP1I	GCGC	2 cut(s)	190, 1040
HincII	GTYRAC	1 cut(s)	1609
HindII	GTYRAC	1 cut(s)	1609
HindIII	AAGCTT	1 cut(s)	1877
HinfI	GANTC	5 cut(s)	350, 474, 760, 1134, 2056
HpaII	CCGG	3 cut(s)	855, 1477, 1627
HphI	GGTGA	4 cut(s)	50, 662, 1842, 1868
Hpy166II	GTNNAC	6 cut(s)	707, 871, 1162, 1609, 1699, 1774
Hpy188I	TCNGA	8 cut(s)	151, 181, 355, 591, 931, 2092, 2112, 2137
Hpy8I	GTNNAC	6 cut(s)	707, 871, 1162, 1609, 1699, 1774
HpyAV	CCTTC	7 cut(s)	85, 153, 287, 306, 1753, 2017, 2107
HpyCH4III	ACNGT	6 cut(s)	711, 843, 1030, 1679, 1703, 1737
HpyCH4IV	ACGT	4 cut(s)	726, 1096, 1372, 1611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	704, 713, 836, 952
HpyF3I	CTNAG	8 cut(s)	193, 582, 746, 818, 1170, 1277, 1300, 1944
HpySE526I	ACGT	4 cut(s)	726, 1096, 1372, 1611
Hsp92II	CATG	9 cut(s)	59, 614, 698, 789, 879, 971, 1342, 1448, 1714
HspAI	GCGC	2 cut(s)	190, 1040
KpnI	GGTACC	1 cut(s)	1064
Kzo9I	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
LmnI	GCTCC	3 cut(s)	189, 857, 1330
Lsp1109I	GCAGC	6 cut(s)	215, 316, 534, 1361, 1453, 1679
LweI	GCATC	6 cut(s)	784, 1222, 1582, 1610, 2116, 2138
MabI	ACCWGGT	1 cut(s)	1852
MaeI	CTAG	3 cut(s)	848, 866, 2012
MaeII	ACGT	4 cut(s)	726, 1096, 1372, 1611
MalI	GATC	9 cut(s)	178, 306, 357, 453, 678, 1185, 1254, 1794, 1867
MboI	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
MfeI	CAATTG	2 cut(s)	903, 1671
MflI	RGATCY	2 cut(s)	1792, 1865
MhlI	GDGCHC	4 cut(s)	27, 186, 373, 709
MlsI	TGGCCA	1 cut(s)	1981
MluNI	TGGCCA	1 cut(s)	1981
MlyI	GAGTC	1 cut(s)	2050
MmeI	TCCRAC	1 cut(s)	601
Mox20I	TGGCCA	1 cut(s)	1981
Mph1103I	ATGCAT	3 cut(s)	700, 1603, 2131
MroXI	GAANNNNTTC	4 cut(s)	349, 504, 1695, 1867
MscI	TGGCCA	1 cut(s)	1981
MseI	TTAA	4 cut(s)	18, 468, 630, 1148
MslI	CAYNNNNRTG	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	1981
MspA1I	CMGCKG	3 cut(s)	206, 656, 1352
MspI	CCGG	3 cut(s)	855, 1477, 1627
MspR9I	CCNGG	4 cut(s)	674, 989, 1477, 1854
MunI	CAATTG	2 cut(s)	903, 1671
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	3 cut(s)	674, 989, 1854
MwoI	GCNNNNNNNGC	4 cut(s)	704, 713, 836, 952
NciI	CCSGG	1 cut(s)	1477
NcoI	CCATGG	1 cut(s)	875
NdeII	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
NlaIII	CATG	9 cut(s)	59, 614, 698, 789, 879, 971, 1342, 1448, 1714
NlaIV	GGNNCC	5 cut(s)	53, 809, 835, 853, 1062
NmuCI	GTSAC	7 cut(s)	530, 736, 970, 1286, 1479, 1654, 1848
NsiI	ATGCAT	3 cut(s)	700, 1603, 2131
NspI	RCATGY	4 cut(s)	789, 971, 1342, 1448
NspV	TTCGAA	2 cut(s)	1415, 1488
PaeI	GCATGC	1 cut(s)	789
PaeR7I	CTCGAG	1 cut(s)	321
PagI	TCATGA	1 cut(s)	610
PciI	ACATGT	1 cut(s)	967
PcsI	WCGNNNNNNNCGW	2 cut(s)	364, 1102
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	4 cut(s)	349, 504, 1695, 1867
PfeI	GAWTC	4 cut(s)	350, 474, 760, 1134
PflMI	CCANNNNNTGG	1 cut(s)	1325
PkrI	GCNGC	7 cut(s)	205, 331, 549, 838, 1351, 1443, 1669
PleI	GAGTC	1 cut(s)	2050
PpsI	GAGTC	1 cut(s)	2050
Ppu21I	YACGTR	1 cut(s)	1373
PpuMI	RGGWCCY	1 cut(s)	808
PscI	ACATGT	1 cut(s)	967
PshAI	GACNNNNGTC	2 cut(s)	656, 1846
PshBI	ATTAAT	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	186
Psp1406I	AACGTT	1 cut(s)	1096
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	3 cut(s)	672, 987, 1852
PspGI	CCWGG	3 cut(s)	672, 987, 1852
PspN4I	GGNNCC	5 cut(s)	53, 809, 835, 853, 1062
PspPI	GGNCC	2 cut(s)	808, 1586
PspPPI	RGGWCCY	1 cut(s)	808
PspXI	VCTCGAGB	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	1792, 1865
PvuII	CAGCTG	2 cut(s)	206, 1352
RsaI	GTAC	6 cut(s)	286, 1062, 1734, 1775, 2010, 2062
RsaNI	GTAC	6 cut(s)	285, 1061, 1733, 1774, 2009, 2061
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	4 cut(s)	18, 468, 630, 1148
SatI	GCNGC	7 cut(s)	204, 330, 548, 837, 1350, 1442, 1668
Sau3AI	GATC	9 cut(s)	176, 304, 355, 451, 676, 1183, 1252, 1792, 1865
Sau96I	GGNCC	2 cut(s)	808, 1586
SchI	GAGTC	1 cut(s)	2050
ScrFI	CCNGG	4 cut(s)	674, 989, 1477, 1854
SduI	GDGCHC	4 cut(s)	27, 186, 373, 709
SexAI	ACCWGGT	1 cut(s)	1852
SfaNI	GCATC	6 cut(s)	784, 1222, 1582, 1610, 2116, 2138
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	2 cut(s)	1415, 1488
SinI	GGWCC	2 cut(s)	808, 1586
SlaI	CTCGAG	1 cut(s)	321
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	6 cut(s)	278, 321, 374, 384, 509, 2018
SmoI	CTYRAG	6 cut(s)	278, 321, 374, 384, 509, 2018
SphI	GCATGC	1 cut(s)	789
SsiI	CCGC	2 cut(s)	654, 837
SspI	AATATT	1 cut(s)	1810
SspMI	CTAG	3 cut(s)	848, 866, 2012
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	4 cut(s)	672, 987, 1475, 1852
StyI	CCWWGG	1 cut(s)	875
TaaI	ACNGT	6 cut(s)	711, 843, 1030, 1679, 1703, 1737
TaiI	ACGT	4 cut(s)	729, 1099, 1375, 1614
TatI	WGTACW	3 cut(s)	1732, 1773, 2008
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	4 cut(s)	350, 474, 760, 1134
Tru1I	TTAA	4 cut(s)	18, 468, 630, 1148
Tru9I	TTAA	4 cut(s)	18, 468, 630, 1148
TscAI	CASTG	6 cut(s)	171, 564, 714, 988, 1164, 1285
TseFI	GTSAC	7 cut(s)	530, 736, 970, 1286, 1479, 1654, 1848
TseI	GCWGC	6 cut(s)	203, 329, 547, 1349, 1441, 1667
Tsp45I	GTSAC	7 cut(s)	530, 736, 970, 1286, 1479, 1654, 1848
TspGWI	ACGGA	2 cut(s)	1063, 1854
TspRI	CASTG	6 cut(s)	171, 564, 714, 988, 1164, 1285
Van91I	CCANNNNNTGG	1 cut(s)	1325
VneI	GTGCAC	1 cut(s)	705
VpaK11BI	GGWCC	2 cut(s)	808, 1586
VspI	ATTAAT	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	2021
XapI	RAATTY	2 cut(s)	153, 689
XceI	RCATGY	4 cut(s)	789, 971, 1342, 1448
XhoI	CTCGAG	1 cut(s)	321
XmnI	GAANNNNTTC	4 cut(s)	349, 504, 1695, 1867
XspI	CTAG	3 cut(s)	848, 866, 2012
Zsp2I	ATGCAT	3 cut(s)	700, 1603, 2131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.