Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001314

Physical Location & Seq

Genomic Coordinates Forward (+)

166498 .. 169104

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGAAGTTTATGAAAATTGGGACCAAGCCGGATACCTTCTACACTGAACGAGCTACCAGGTCTGTAGTTTCAGATGTACCCAGCGACCTTCTCATACAAATCAACAACATCAGTTATGTTCTCCATAAGTTTCCATTGCTTCCAAAATGCGGTCTATTACAACGGCTTTGCTGTGATTCTGGTGATCTGGAAAAAATGAACATAGAGCTTCACGACATTCCAGGAGGCGAAGAAGCTTTTGAACTGTGTGCTAAGTTCTGTTATGGAATTAAAATAAAACTCAGTGCCTATAACTTTTTACCTGCATATTGTGCTGCTAAATTCCTTGAAATGACTGAATCTGTAGACAAGGGAAATTTTGTCCTAAAACTCGAGGCTTTCCTCAATTCATGCATTCTCGAAGGTTGGAAAGACTCCATCGTCACACTACAAACTACTGTTAAGTTGCCTGACTGGTCTGAGAATCTTGGAATCATCAGAAAGTGCATCGATTCAATTGTTGAAAAAATCCTTACACCCCCACCACAGGTGACATGGTCATACACTTATACCAGACCTGGTTACAACAAAAAGCATCATCATTCTGTCCCCAAGGATTGGTGGACAGAGGATATATCAGACCTTGATATAGACCTGTTTCGGTGTATAGTTACTGCTGTTAGATCAACCTATATGCTGCCACCACAGCTCATTGGGGAGGCTTTGCACGTCTATGCTTGCCGTTGGCTACCAGACACCACAAACATTAGACCTCCTCCGGATCAAAATAGCGATTATAATCATGATGAAACATTAATGGAAAAGAATCGAAGGATTGTTGATACCATTGCTAGTATGATTCCTGGAGATAAGGGATCGGTTTCAGTTGGTTTCTTGCTAAGGCTTCTTGTTATTGCAAGTTATCTAGGAGGAGTGTCTCCGGTGACAAAGAGAGAACTCTTGAGGAGATCCAGTCTACAACTTGAAGAGGCAACCGTGAATGACCTGCTTTTTCCTTCACACTCACCCACTGACCCTGAATTTTATGATATTGACTTAGTGTTGGCACTCTTGCAAAGTTTCTTGGTGATATGGAGAAGACAATCCCCTGCAGCAGCTGCAGAAAACAGCCACCACTTTTTCAGGACAGTAAGAAAGGTTGGGAAGATCATTGATTCTTACCTTCAAGTCGTTGCAAGGGATGCCAACATGCCAGTATCAAAAGTGGCAACTCTTGCTGAAGCTTTGCCAGATATGGCTAGGGAAGACCATGATGACATCTACAAGGCTATTAACATTTATTTAAAGGAGCACTCTGATCTGAGCAAGGCAGATAAGAAGCGCTTGTGCCGCATTTTAGACTGCCAGAAGTTGTCGCCAGAGGTACGTGCTCATGCTGTCAAAAATGAGAGGCTACCATTGAGGATTGTTGTGCAAGTCCTCTTCTTTGAGCAAGAGAGAGGTTCCAACTCTAAGGCAGCAGCGACATCTCATAGACTACCGGGCCAGCTGGAGCAACTTTACAGCTCAGGAAAACAAACATCAACTACCAGCAGGGGTGAAGATCATGCAGCTAAGCAAAGATTGGGTGGAGATGATGAAAAACTCAGTAGGGGGGAGGGCACGAGAAGAACCAATAATGCCGTTTCTGAAACCACGAATGCTACTGGAAAGAGAGATATTTATGAGCAAAGGAAAAGATCAGAAGCAAAGTCTGCAGTGGAATTCACGGAAAGAAGGGCCTTGAATAGGGGTGAAATACAAGTGGAAGAAGTAAATATGGGAAGAGAAATCAGGGAGCTGGGAATATTATCAGCTGGGAGCAAGTTGGACGCCAGCAAGATGATACACAAGGGAAGTAGATCATCAGAGCATGGCCGCGACAAAGCCAAAGACAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

626

Amino Acids

70.75

Weight (kDa)

8.29

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	199 - 454	6.9e-78	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001314)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78580 AT1G78580 AT1G78580 AT1G78580
fragaria_vesca	FvH4_3g06590 FvH4_3g06590 FvH4_3g17650 FvH4_3g17650
malus_domestica	MD03G1250300.v1.1 MD10G1270400.v1.1 MD11G1270400.v1.1
prunus_persica	Prupe.4G071400_v2.0.a1 Prupe.4G071400_v2.0.a1 Prupe.4G071400_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1 Prupe.4G155900_v2.0.a1
pyrus_communis	pycom03g19800 pycom10g22630 pycom11g23920
rosa_chinensis	RchiOBHm_Chr5g0012561 RchiOBHm_Chr5g0029381
rosa_laevigata	RLG00000031925 RLG00000033160
rosa_multiflora	Rmu_sc0003577.1_g000012 Rmu_sc0004373.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050580 Rroxscaffold_1G00064100
rosa_rugosa	Rorug05G0002400 Rorug05G0002400 Rorug05G0002500 Rorug05G0002600 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000 Rorug05G0114000
rosa_samantha	Rh5AG096400 Rh5AG205600 Rh5BG092600 Rh5BG204200 Rh5CG105500 Rh5DG092100 Rh5DG207800
rosa_wichuraiana	Rw5G008440 Rw5G018730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
AasI	GACNNNNNNGTC	1 cut(s)	419
Acc36I	ACCTGC	2 cut(s)	310, 993
AccB7I	CCANNNNNTGG	1 cut(s)	597
AccI	GTMKAC	2 cut(s)	345, 955
AccII	CGCG	1 cut(s)	1860
AccIII	TCCGGA	1 cut(s)	757
AciI	CCGC	3 cut(s)	150, 1330, 1858
AclWI	GGATC	3 cut(s)	768, 862, 942
AcoI	YGGCCR	1 cut(s)	1855
AcsI	RAATTY	4 cut(s)	320, 355, 1019, 1703
AcuI	CTGAAG	1 cut(s)	1239
AcyI	GRCGYC	1 cut(s)	1812
AfaI	GTAC	2 cut(s)	78, 1365
AfeI	AGCGCT	1 cut(s)	1322
AfiI	CCNNNNNNNGG	4 cut(s)	149, 526, 597, 1728
AgsI	TTSAA	7 cut(s)	242, 329, 495, 503, 965, 1166, 1726
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	4 cut(s)	56, 220, 556, 841
Alw21I	GWGCWC	2 cut(s)	1293, 1372
Alw26I	GTCTC	1 cut(s)	921
AlwI	GGATC	3 cut(s)	768, 862, 942
AlwNI	CAGNNNCTG	1 cut(s)	1097
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	757
Aor51HI	AGCGCT	1 cut(s)	1322
AoxI	GGCC	3 cut(s)	1483, 1719, 1855
ApeKI	GCWGC	8 cut(s)	314, 676, 1091, 1094, 1097, 1457, 1460, 1550
ApoI	RAATTY	4 cut(s)	320, 355, 1019, 1703
AseI	ATTAAT	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	1323
AspS9I	GGNCC	3 cut(s)	21, 1483, 1719
AsuC2I	CCSGG	1 cut(s)	1482
AsuHPI	GGTGA	7 cut(s)	194, 541, 934, 996, 1078, 1550, 1745
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	1604
BauI	CACGAG	1 cut(s)	1603
BbsI	GAAGAC	2 cut(s)	1084, 1251
Bbv12I	GWGCWC	2 cut(s)	1293, 1372
BbvI	GCAGC	8 cut(s)	301, 663, 1084, 1103, 1106, 1469, 1472, 1562
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	3 cut(s)	179, 705, 1607
BciT130I	CCWGG	4 cut(s)	58, 222, 558, 843
BciVI	GTATCC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	1482
BcoDI	GTCTC	1 cut(s)	921
BfaI	CTAG	3 cut(s)	831, 905, 1239
BfmI	CTRYAG	5 cut(s)	63, 342, 1089, 1098, 1695
BfoI	RGCGCY	1 cut(s)	1324
BfuAI	ACCTGC	2 cut(s)	310, 993
BfuI	GTATCC	1 cut(s)	25
BlpI	GCTNAGC	1 cut(s)	1554
Bme1390I	CCNGG	5 cut(s)	58, 222, 558, 843, 1482
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	3 cut(s)	21, 1483, 1719
BmiI	GGNNCC	2 cut(s)	22, 1444
BmrFI	CCNGG	5 cut(s)	58, 222, 558, 843, 1482
BmsI	GCATC	3 cut(s)	495, 583, 1171
BpiI	GAAGAC	2 cut(s)	1084, 1251
BpmI	CTGGAG	2 cut(s)	864, 1511
Bpu10I	CCTNAGC	2 cut(s)	878, 1507
Bpu1102I	GCTNAGC	1 cut(s)	1554
BpuEI	CTTGAG	1 cut(s)	961
BpuMI	CCSGG	1 cut(s)	1482
Bsa29I	ATCGAT	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	1367
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	1812
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	2 cut(s)	757, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	937, 967
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 526, 597, 1728
Bse1I	ACTGG	4 cut(s)	458, 951, 1193, 1651
Bse3DI	GCAATG	2 cut(s)	134, 825
Bse8I	GATNNNNATC	1 cut(s)	777
BseAI	TCCGGA	1 cut(s)	757
BseBI	CCWGG	4 cut(s)	58, 222, 558, 843
BseCI	ATCGAT	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	1186
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	4 cut(s)	149, 526, 597, 1728
BseMI	GCAATG	2 cut(s)	134, 825
BseMII	CTCAG	5 cut(s)	295, 450, 1292, 1521, 1600
BseNI	ACTGG	4 cut(s)	458, 951, 1193, 1651
BseRI	GAGGAG	3 cut(s)	744, 924, 958
BseSI	GKGCMC	1 cut(s)	1604
BseXI	GCAGC	8 cut(s)	301, 663, 1084, 1103, 1106, 1469, 1472, 1562
BseYI	CCCAGC	3 cut(s)	80, 1780, 1796
Bsh1236I	CGCG	1 cut(s)	1860
BshFI	GGCC	3 cut(s)	1485, 1721, 1857
BshVI	ATCGAT	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	1293, 1372
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	4 cut(s)	29, 758, 920, 1481
BslFI	GGGAC	2 cut(s)	34, 572
BslI	CCNNNNNNNGG	4 cut(s)	149, 526, 597, 1728
BsmAI	GTCTC	1 cut(s)	921
BsmFI	GGGAC	2 cut(s)	34, 572
BsmI	GAATGC	2 cut(s)	393, 1645
BsnI	GGCC	3 cut(s)	1485, 1721, 1857
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	1293, 1372, 1604
Bsp13I	TCCGGA	1 cut(s)	757
Bsp1720I	GCTNAGC	1 cut(s)	1554
BspACI	CCGC	3 cut(s)	150, 1330, 1858
BspANI	GGCC	3 cut(s)	1485, 1721, 1857
BspCNI	CTCAG	5 cut(s)	294, 451, 1293, 1520, 1599
BspDI	ATCGAT	1 cut(s)	489
BspEI	TCCGGA	1 cut(s)	757
BspFNI	CGCG	1 cut(s)	1860
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	22, 1444
BspMAI	CTGCAG	3 cut(s)	1093, 1102, 1699
BspMI	ACCTGC	2 cut(s)	310, 993
BspPI	GGATC	3 cut(s)	768, 862, 942
BsrDI	GCAATG	2 cut(s)	134, 825
BsrI	ACTGG	4 cut(s)	458, 951, 1193, 1651
BssECI	CCNNGG	1 cut(s)	591
BssNI	GRCGYC	1 cut(s)	1812
BssSI	CACGAG	1 cut(s)	1603
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	1603
Bst2UI	CCWGG	4 cut(s)	58, 222, 558, 843
Bst4CI	ACNGT	4 cut(s)	246, 439, 976, 1129
Bst6I	CTCTTC	3 cut(s)	960, 1427, 1759
BstACI	GRCGYC	1 cut(s)	1812
BstAPI	GCANNNNNTGC	5 cut(s)	311, 1097, 1181, 1214, 1694
BstBAI	YACGTR	1 cut(s)	1367
BstC8I	GCNNGC	3 cut(s)	718, 1487, 1816
BstENI	CCTNNNNNAGG	1 cut(s)	1726
BstF5I	GGATG	1 cut(s)	1186
BstFNI	CGCG	1 cut(s)	1860
BstH2I	RGCGCY	1 cut(s)	1324
BstHHI	GCGC	1 cut(s)	1323
BstMAI	GTCTC	1 cut(s)	921
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 685, 1097, 1181, 1214, 1329, 1694
BstNI	CCWGG	4 cut(s)	58, 222, 558, 843
BstNSI	RCATGY	1 cut(s)	1192
BstSCI	CCNGG	5 cut(s)	56, 220, 556, 841, 1480
BstSFI	CTRYAG	5 cut(s)	63, 342, 1089, 1098, 1695
BstSLI	GKGCMC	1 cut(s)	1604
BstUI	CGCG	1 cut(s)	1860
BstV1I	GCAGC	8 cut(s)	301, 663, 1084, 1103, 1106, 1469, 1472, 1562
BstV2I	GAAGAC	2 cut(s)	1084, 1251
BstX2I	RGATCY	1 cut(s)	947
BstYI	RGATCY	1 cut(s)	947
Bsu15I	ATCGAT	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	1485, 1721, 1857
BsuTUI	ATCGAT	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	1186
BtsI	GCAGTG	1 cut(s)	1704
BtsIMutI	CAGTG	4 cut(s)	42, 289, 1008, 1704
BveI	ACCTGC	2 cut(s)	310, 993
Cac8I	GCNNGC	3 cut(s)	718, 1487, 1816
CaiI	CAGNNNCTG	1 cut(s)	1097
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	1323
Cfr13I	GGNCC	3 cut(s)	21, 1483, 1719
ClaI	ATCGAT	1 cut(s)	489
CseI	GACGC	1 cut(s)	1820
CsiI	ACCWGGT	2 cut(s)	56, 556
Csp6I	GTAC	2 cut(s)	77, 1364
CviAII	CATG	8 cut(s)	390, 534, 782, 1189, 1250, 1373, 1547, 1853
CviQI	GTAC	2 cut(s)	77, 1364
DraI	TTTAAA	1 cut(s)	1284
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	1855
Eam1104I	CTCTTC	3 cut(s)	960, 1427, 1759
EarI	CTCTTC	3 cut(s)	960, 1427, 1759
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	21
Eco47III	AGCGCT	1 cut(s)	1322
Eco57I	CTGAAG	1 cut(s)	1239
Eco88I	CYCGRG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	1726
EcoO109I	RGGNCCY	1 cut(s)	1719
EcoRI	GAATTC	1 cut(s)	1703
EcoRII	CCWGG	4 cut(s)	56, 220, 556, 841
EcoT14I	CCWWGG	1 cut(s)	591
EcoT22I	ATGCAT	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	8 cut(s)	393, 537, 785, 1192, 1253, 1376, 1550, 1856
FalI	AAGNNNNNCTT	2 cut(s)	1307, 1339
FaqI	GGGAC	2 cut(s)	34, 572
FatI	CATG	8 cut(s)	389, 533, 781, 1188, 1249, 1372, 1546, 1852
FblI	GTMKAC	2 cut(s)	345, 955
FokI	GGATG	1 cut(s)	1193
FspBI	CTAG	3 cut(s)	831, 905, 1239
GlaI	GCGC	1 cut(s)	1322
GsaI	CCCAGC	3 cut(s)	84, 1784, 1800
GsuI	CTGGAG	2 cut(s)	864, 1511
HaeII	RGCGCY	1 cut(s)	1324
HaeIII	GGCC	3 cut(s)	1485, 1721, 1857
HapII	CCGG	4 cut(s)	29, 758, 920, 1481
HgaI	GACGC	1 cut(s)	1820
HhaI	GCGC	1 cut(s)	1323
Hin1I	GRCGYC	1 cut(s)	1812
Hin1II	CATG	8 cut(s)	393, 537, 785, 1192, 1253, 1376, 1550, 1856
Hin6I	GCGC	1 cut(s)	1321
HinP1I	GCGC	1 cut(s)	1321
HindIII	AAGCTT	2 cut(s)	234, 1221
HinfI	GANTC	9 cut(s)	176, 338, 413, 463, 471, 491, 805, 838, 1154
HpaII	CCGG	4 cut(s)	29, 758, 920, 1481
HphI	GGTGA	7 cut(s)	194, 541, 934, 996, 1078, 1550, 1745
Hpy166II	GTNNAC	3 cut(s)	346, 603, 956
Hpy188I	TCNGA	9 cut(s)	73, 460, 479, 619, 1297, 1302, 1630, 1684, 1849
Hpy188III	TCNNGA	8 cut(s)	188, 212, 398, 758, 782, 940, 1123, 1509
Hpy8I	GTNNAC	3 cut(s)	346, 603, 956
HpyAV	CCTTC	7 cut(s)	46, 98, 395, 804, 1005, 1172, 1710
HpyCH4III	ACNGT	4 cut(s)	246, 439, 976, 1129
HpyCH4IV	ACGT	2 cut(s)	708, 1366
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 685, 1097, 1181, 1214, 1329, 1694
HpySE526I	ACGT	2 cut(s)	708, 1366
Hsp92I	GRCGYC	1 cut(s)	1812
Hsp92II	CATG	8 cut(s)	393, 537, 785, 1192, 1253, 1376, 1550, 1856
HspAI	GCGC	1 cut(s)	1321
Kpn2I	TCCGGA	1 cut(s)	757
LmnI	GCTCC	4 cut(s)	1288, 1492, 1777, 1800
Lsp1109I	GCAGC	8 cut(s)	301, 663, 1084, 1103, 1106, 1469, 1472, 1562
LweI	GCATC	3 cut(s)	495, 583, 1171
MabI	ACCWGGT	2 cut(s)	56, 556
MaeI	CTAG	3 cut(s)	831, 905, 1239
MaeII	ACGT	2 cut(s)	708, 1366
MaeIII	GTNAC	5 cut(s)	421, 529, 560, 649, 922
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	947
MhlI	GDGCHC	3 cut(s)	1293, 1372, 1604
MluCI	AATT	8 cut(s)	15, 267, 320, 355, 385, 495, 1019, 1703
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	3 cut(s)	386, 1470, 1788
Mph1103I	ATGCAT	1 cut(s)	395
MroI	TCCGGA	1 cut(s)	757
MseI	TTAA	5 cut(s)	270, 441, 794, 1272, 1283
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	3 cut(s)	1097, 1489, 1796
MspI	CCGG	4 cut(s)	29, 758, 920, 1481
MspR9I	CCNGG	5 cut(s)	58, 222, 558, 843, 1482
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	393, 1645
MvaI	CCWGG	4 cut(s)	58, 222, 558, 843
MvnI	CGCG	1 cut(s)	1860
MwoI	GCNNNNNNNGC	7 cut(s)	311, 685, 1097, 1181, 1214, 1329, 1694
NciI	CCSGG	1 cut(s)	1482
NlaIII	CATG	8 cut(s)	393, 537, 785, 1192, 1253, 1376, 1550, 1856
NlaIV	GGNNCC	2 cut(s)	22, 1444
NmuCI	GTSAC	3 cut(s)	421, 529, 922
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	1 cut(s)	1192
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	2 cut(s)	393, 1645
PfeI	GAWTC	8 cut(s)	176, 338, 463, 471, 491, 805, 838, 1154
PflFI	GACNNNGTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	597
PfoI	TCCNGGA	2 cut(s)	220, 841
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Ppu21I	YACGTR	1 cut(s)	1367
PshBI	ATTAAT	1 cut(s)	794
PsiI	TTATAA	1 cut(s)	777
Psp6I	CCWGG	4 cut(s)	56, 220, 556, 841
PspFI	CCCAGC	3 cut(s)	80, 1780, 1796
PspGI	CCWGG	4 cut(s)	56, 220, 556, 841
PspN4I	GGNNCC	2 cut(s)	22, 1444
PspPI	GGNCC	3 cut(s)	21, 1483, 1719
PspXI	VCTCGAGB	1 cut(s)	371
PstI	CTGCAG	3 cut(s)	1093, 1102, 1699
PstNI	CAGNNNCTG	1 cut(s)	1097
PsuI	RGATCY	1 cut(s)	947
PsyI	GACNNNGTC	1 cut(s)	535
PvuII	CAGCTG	3 cut(s)	1097, 1489, 1796
RsaI	GTAC	2 cut(s)	78, 1365
RsaNI	GTAC	2 cut(s)	77, 1364
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	5 cut(s)	270, 441, 794, 1272, 1283
Sau96I	GGNCC	3 cut(s)	21, 1483, 1719
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	5 cut(s)	58, 222, 558, 843, 1482
SduI	GDGCHC	3 cut(s)	1293, 1372, 1604
SexAI	ACCWGGT	2 cut(s)	56, 556
SfaNI	GCATC	3 cut(s)	495, 583, 1171
SfcI	CTRYAG	5 cut(s)	63, 342, 1089, 1098, 1695
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	371, 940
SmoI	CTYRAG	2 cut(s)	371, 940
Sse9I	AATT	8 cut(s)	15, 267, 320, 355, 385, 495, 1019, 1703
SsiI	CCGC	3 cut(s)	150, 1330, 1858
SspI	AATATT	1 cut(s)	1788
SspMI	CTAG	3 cut(s)	831, 905, 1239
StyD4I	CCNGG	5 cut(s)	56, 220, 556, 841, 1480
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	4 cut(s)	246, 439, 976, 1129
TaiI	ACGT	2 cut(s)	711, 1369
TaqI	TCGA	4 cut(s)	372, 399, 489, 808
TasI	AATT	8 cut(s)	15, 267, 320, 355, 385, 495, 1019, 1703
TauI	GCSGC	2 cut(s)	1332, 1860
TfiI	GAWTC	8 cut(s)	176, 338, 463, 471, 491, 805, 838, 1154
Tru1I	TTAA	5 cut(s)	270, 441, 794, 1272, 1283
Tru9I	TTAA	5 cut(s)	270, 441, 794, 1272, 1283
TscAI	CASTG	4 cut(s)	49, 289, 1015, 1704
TseFI	GTSAC	3 cut(s)	421, 529, 922
TseI	GCWGC	8 cut(s)	314, 676, 1091, 1094, 1097, 1457, 1460, 1550
Tsp45I	GTSAC	3 cut(s)	421, 529, 922
TspDTI	ATGAA	6 cut(s)	17, 26, 212, 378, 801, 1593
TspGWI	ACGGA	1 cut(s)	1724
TspRI	CASTG	4 cut(s)	49, 289, 1015, 1704
Tth111I	GACNNNGTC	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	21
VspI	ATTAAT	1 cut(s)	794
XagI	CCTNNNNNAGG	1 cut(s)	1726
XapI	RAATTY	4 cut(s)	320, 355, 1019, 1703
XceI	RCATGY	1 cut(s)	1192
XcmI	CCANNNNNNNNNTGG	1 cut(s)	531
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	345, 955
XspI	CTAG	3 cut(s)	831, 905, 1239
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.