Rorug05G0114000

alpha,alpha-trehalose-phosphate synthase UDP-forming

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
10156326 .. 10160256
3931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0114000.1

Sequence Viewer

Length: 468 bp
ATGGATCTTGACGCGAAAAGGTTTGGAAGAGAGATCAGGAAAGGGGAGGGGATGAAATTGGATCAGCTATTTGAGAACACCCCTTATATGAGAGAAAGGAATGCAAACATACATCCTTTCGATTTGGGTATGCTTAGTGAAGCTTTCCGAATAAAGGAGACAACTCCTGTTCATTTACCTTCCGCCGAGAAAGGGATCCGTACCTCAGTGGTGAAGTCAAAGGGTGAGTTAGAAGACAAGGAAAGGAAGCATAAAAAGAACAAAGACAAGGATAAGGATCGTAAGAAGCACAAAAAACATCGCAAGGACAACCGCGGTGATGCTGATTACAGCAATAAGAATGTTACTAATGGCTTGAAAACTGTGCAGTTGAAGGAACAGCCAGATATGTTCATTCAGAAGAGGAGGCTCAATGGTTATGAAGATCTTTCTGTCCGTGAAAATAAAAGAGTGAGAATCCAAAGATAA

Protein Analysis

155

Amino Acids

18.37

Weight (kDa)

10.02

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 14, 315
AciI CCGC 3 cut(s) 183, 313, 315
AclWI GGATC 5 cut(s) 12, 69, 190, 203, 285
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 154, 192
AgsI TTSAA 2 cut(s) 358, 373
AluBI AGCT 2 cut(s) 67, 143
AluI AGCT 2 cut(s) 67, 143
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 5 cut(s) 12, 69, 190, 203, 285
AsuHPI GGTGA 3 cut(s) 223, 236, 329
BamHI GGATCC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 152
BglII AGATCT 1 cut(s) 424
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 192
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 57, 112
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 154, 192
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 14, 315
BslI CCNNNNNNNGG 2 cut(s) 154, 192
BsmAI GTCTC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 106
Bsp143I GATC 6 cut(s) 4, 33, 61, 195, 277, 424
BspACI CCGC 3 cut(s) 183, 313, 315
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 2 cut(s) 14, 315
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 5 cut(s) 12, 69, 190, 203, 285
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 6 cut(s) 4, 33, 61, 195, 277, 424
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 22, 395
BstDEI CTNAG 2 cut(s) 134, 205
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 57, 112
BstFNI CGCG 2 cut(s) 14, 315
BstKTI GATC 6 cut(s) 7, 36, 64, 198, 280, 427
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 6 cut(s) 4, 33, 61, 195, 277, 424
BstUI CGCG 2 cut(s) 14, 315
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 3 cut(s) 4, 195, 424
BstYI RGATCY 3 cut(s) 4, 195, 424
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 57, 112
BtsIMutI CAGTG 1 cut(s) 213
Cfr42I CCGCGG 1 cut(s) 316
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 201
CviJI RGCY 5 cut(s) 67, 143, 354, 382, 409
CviKI_1 RGCY 5 cut(s) 67, 143, 354, 382, 409
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 134, 205
DpnI GATC 6 cut(s) 6, 35, 63, 197, 279, 426
DpnII GATC 6 cut(s) 4, 33, 61, 195, 277, 424
Eam1104I CTCTTC 2 cut(s) 22, 395
EarI CTCTTC 2 cut(s) 22, 395
EciI GGCGGA 1 cut(s) 172
FaiI YATR 7 cut(s) 87, 89, 110, 131, 252, 389, 420
FokI GGATG 2 cut(s) 64, 99
HgaI GACGC 1 cut(s) 20
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 1 cut(s) 456
HphI GGTGA 3 cut(s) 223, 236, 329
Hpy188I TCNGA 2 cut(s) 149, 399
Hpy188III TCNNGA 2 cut(s) 8, 37
HpyAV CCTTC 2 cut(s) 189, 367
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 2 cut(s) 104, 367
HpyF3I CTNAG 2 cut(s) 134, 205
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 6 cut(s) 4, 33, 61, 195, 277, 424
LpnPI CCDG 3 cut(s) 22, 180, 396
LweI GCATC 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 343
MalI GATC 6 cut(s) 6, 35, 63, 197, 279, 426
MboI GATC 6 cut(s) 4, 33, 61, 195, 277, 424
MboII GAAGA 4 cut(s) 39, 245, 412, 434
MflI RGATCY 3 cut(s) 4, 195, 424
MluCI AATT 1 cut(s) 56
MnlI CCTC 4 cut(s) 40, 214, 396, 399
MspA1I CMGCKG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 106
MvnI CGCG 2 cut(s) 14, 315
NdeII GATC 6 cut(s) 4, 33, 61, 195, 277, 424
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 211
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 3 cut(s) 4, 195, 424
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SacII CCGCGG 1 cut(s) 316
Sau3AI GATC 6 cut(s) 4, 33, 61, 195, 277, 424
SetI ASST 5 cut(s) 23, 69, 145, 181, 206
SfaNI GCATC 1 cut(s) 310
Sfr303I CCGCGG 1 cut(s) 316
SgrBI CCGCGG 1 cut(s) 316
Sse9I AATT 1 cut(s) 56
SsiI CCGC 3 cut(s) 183, 313, 315
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 56
TfiI GAWTC 1 cut(s) 456
TscAI CASTG 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 68, 161, 382, 435
TspGWI ACGGA 2 cut(s) 188, 425
TspRI CASTG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.