Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005611

Physical Location & Seq

Genomic Coordinates Forward (+)

617508 .. 618998

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCATTTGCATCCAAGCATAGAGAGTCATTCACATTTCTCAAGTAGTTCCGATAAGTTCAGTCATGAGTTTCAAGAAAAGGAAATAGTGTCTATGGATGAGAAACCTTCTTCTCAAGGAAAAGAGCTCCAGAAGCTAGAGGTATATCAACAACGCAGCCTGTCACCTAGTCCCGGGGGACTCAGTTTCCGTAAAAGTACTAGCCCTCCGTATAAGCAGGAACTGAATTTAGATGCTAGCACTAGCATACGGGAAGGGTTGGCTTCAAAGACATCTGGGACTGGCAATGAAAATAGGAATCCTATTCCATCCAGTAATGATAAAAGAGATAAGCAAGGGAACGACCAGGATGAGGGCAGCAGAGATCCATGTAGCACAGTGCTGAATACAGAGACTAGTGTTCTTGATGTTCATGTTATTGATGATAAGTGTCATTTGTCCAATGCAGAGAAAAGTGAACGCGATTTGCCAACCACAATTGGGTTGAAAAATCAGCGCAAAATCCAGAGAGTTAGTTCAGACACATCTAATGTATTTATCACAATGGATTGCCCACGAGGCAGATCTTTACCTTCTGATATGCGGAGATACTCAATGTCTGCAATTGATTATGAAAGATATAAAATTGATAATGAAGTTGAGCGGCTTGGAGAAAGGTTAAGGATTGTGCAAGAGGGAAGAGAGAAGCTCAACTTCTCGGTGGGGCACAGAGACAGGGAAAGGATTCAGCTGCAACTTTTGGAGGATATTGCAAGCCATCTTAGAGAGATACGGCAGTTAACAGAACCTGGAAAAGCTGAGGGCCAGGCCGCAATGCTGCCTCCATTATCTAAGGTCATGTCCAAGAAAAGACGTTGGCGGACTTTACCTCTACAAGTGCATACAAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

298

Amino Acids

33.74

Weight (kDa)

8.34

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04890 AT4G13630 AT4G13630
fragaria_vesca	FvH4_4g15740 FvH4_4g15740
malus_domestica	MD04G1008700.v1.1 MD13G1285200.v1.1
prunus_persica	Prupe.1G008000_v2.0.a1 Prupe.1G008000_v2.0.a1 Prupe.1G008000_v2.0.a1 Prupe.1G008000_v2.0.a1
pyrus_communis	pycom04g00640 pycom04g00650 pycom420g01380
rosa_chinensis	RchiOBHm_Chr4g0415341
rosa_laevigata	RLG00000008078
rosa_multiflora	Rmu_sc0003551.1_g000001 Rmu_sc0028326.1_g000005
rosa_roxburghii	Rroxscaffold_5G00359120
rosa_rugosa	Rorug04G0133000 Rorug04G0133100 Rorug04G0133100 Rorug04G0133200
rosa_samantha	Rh4AG194100 Rh4BG192500 Rh4CG205100 Rh4DG191800
rosa_wichuraiana	Rw4G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	643
AccII	CGCG	1 cut(s)	462
AciI	CCGC	4 cut(s)	583, 643, 810, 859
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	226
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	173, 352, 480
AgsI	TTSAA	3 cut(s)	74, 267, 487
AhlI	ACTAGT	1 cut(s)	395
AjnI	CCWGG	3 cut(s)	345, 787, 804
AluBI	AGCT	5 cut(s)	127, 136, 688, 730, 797
AluI	AGCT	5 cut(s)	127, 136, 688, 730, 797
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	2 cut(s)	386, 705
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	2 cut(s)	223, 788
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	802, 807
ApeKI	GCWGC	4 cut(s)	156, 357, 730, 817
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	802
AsuC2I	CCSGG	2 cut(s)	174, 175
AsuHPI	GGTGA	1 cut(s)	156
AsuNHI	GCTAGC	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	761, 794
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	4 cut(s)	168, 369, 717, 804
BccI	CCATC	2 cut(s)	316, 765
BceAI	ACGGC	1 cut(s)	788
BciT130I	CCWGG	3 cut(s)	347, 789, 806
BcnI	CCSGG	2 cut(s)	174, 175
BcoDI	GTCTC	2 cut(s)	386, 705
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	6 cut(s)	137, 168, 201, 237, 243, 396
BglI	GCCNNNNNGGC	1 cut(s)	558
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	6 cut(s)	157, 358, 644, 731, 810, 818
BlsI	GCNGC	6 cut(s)	158, 359, 645, 732, 811, 819
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	5 cut(s)	174, 175, 347, 789, 806
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	802
BmrFI	CCNGG	5 cut(s)	174, 175, 347, 789, 806
BmsI	GCATC	2 cut(s)	19, 223
BmtI	GCTAGC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
BpmI	CTGGAG	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	25, 99
BpuMI	CCSGG	2 cut(s)	174, 175
BsaJI	CCNNGG	2 cut(s)	173, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 352, 480
Bse1I	ACTGG	2 cut(s)	286, 312
Bse3DI	GCAATG	2 cut(s)	292, 819
BseBI	CCWGG	3 cut(s)	347, 789, 806
BseDI	CCNNGG	2 cut(s)	173, 174
BseGI	GGATG	4 cut(s)	10, 103, 308, 355
BseLI	CCNNNNNNNGG	3 cut(s)	173, 352, 480
BseMI	GCAATG	2 cut(s)	292, 819
BseMII	CTCAG	2 cut(s)	196, 789
BseNI	ACTGG	2 cut(s)	286, 312
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	4 cut(s)	168, 369, 717, 804
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	804, 809
BsiHKAI	GWGCWC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	3 cut(s)	156, 192, 292
BslI	CCNNNNNNNGG	3 cut(s)	173, 352, 480
BsmAI	GTCTC	2 cut(s)	386, 705
BsmFI	GGGAC	3 cut(s)	156, 192, 292
BsnI	GGCC	2 cut(s)	804, 809
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	129, 708
Bsp143I	GATC	2 cut(s)	364, 563
BspACI	CCGC	4 cut(s)	583, 643, 810, 859
BspANI	GGCC	2 cut(s)	804, 809
BspCNI	CTCAG	2 cut(s)	195, 790
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	64
BspOI	GCTAGC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	292, 819
BsrI	ACTGG	2 cut(s)	286, 312
BssECI	CCNNGG	2 cut(s)	173, 174
BssMI	GATC	2 cut(s)	364, 563
BssSI	CACGAG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	3 cut(s)	347, 789, 806
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	673
BstC8I	GCNNGC	2 cut(s)	238, 754
BstDEI	CTNAG	4 cut(s)	182, 761, 798, 831
BstF5I	GGATG	4 cut(s)	10, 103, 308, 355
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	367, 566
BstMAI	GTCTC	2 cut(s)	386, 705
BstMBI	GATC	2 cut(s)	364, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 558
BstNI	CCWGG	3 cut(s)	347, 789, 806
BstSCI	CCNGG	5 cut(s)	172, 173, 345, 787, 804
BstSLI	GKGCMC	1 cut(s)	708
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	168, 369, 717, 804
BstX2I	RGATCY	2 cut(s)	364, 563
BstYI	RGATCY	2 cut(s)	364, 563
BsuRI	GGCC	2 cut(s)	804, 809
BtsCI	GGATG	4 cut(s)	10, 103, 308, 355
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	238, 754
CaiI	CAGNNNCTG	2 cut(s)	223, 788
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	802
Cfr9I	CCCGGG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	4 cut(s)	65, 369, 413, 838
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	4 cut(s)	182, 761, 798, 831
DpnI	GATC	2 cut(s)	366, 565
DpnII	GATC	2 cut(s)	364, 563
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
EciI	GGCGGA	1 cut(s)	874
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	3 cut(s)	345, 787, 804
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	4 cut(s)	68, 372, 416, 841
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FaqI	GGGAC	3 cut(s)	156, 192, 292
FatI	CATG	4 cut(s)	64, 368, 412, 837
Fnu4HI	GCNGC	6 cut(s)	157, 358, 644, 731, 810, 818
FokI	GGATG	3 cut(s)	110, 295, 362
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	6 cut(s)	157, 358, 644, 731, 810, 818
FspBI	CTAG	6 cut(s)	137, 168, 201, 237, 243, 396
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	6 cut(s)	157, 358, 644, 731, 810, 818
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	804, 809
HapII	CCGG	1 cut(s)	174
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	68, 372, 416, 841
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	4 cut(s)	25, 180, 298, 724
HpaI	GTTAAC	1 cut(s)	780
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	458, 780
Hpy188I	TCNGA	3 cut(s)	52, 520, 577
Hpy188III	TCNNGA	5 cut(s)	65, 74, 130, 404, 505
Hpy8I	GTNNAC	2 cut(s)	458, 780
HpyAV	CCTTC	3 cut(s)	117, 248, 582
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	853
HpyCH4V	TGCA	8 cut(s)	4, 10, 446, 602, 670, 733, 752, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 558
HpyF3I	CTNAG	4 cut(s)	182, 761, 798, 831
HpySE526I	ACGT	1 cut(s)	853
Hsp92II	CATG	4 cut(s)	68, 372, 416, 841
HspAI	GCGC	1 cut(s)	496
KspAI	GTTAAC	1 cut(s)	780
Kzo9I	GATC	2 cut(s)	364, 563
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	4 cut(s)	168, 369, 717, 804
LweI	GCATC	2 cut(s)	19, 223
MaeI	CTAG	6 cut(s)	137, 168, 201, 237, 243, 396
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	2 cut(s)	366, 565
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	2 cut(s)	364, 563
MboII	GAAGA	2 cut(s)	102, 690
MfeI	CAATTG	2 cut(s)	477, 603
MflI	RGATCY	2 cut(s)	364, 563
MhlI	GDGCHC	2 cut(s)	129, 708
MluCI	AATT	4 cut(s)	226, 477, 603, 624
MlyI	GAGTC	2 cut(s)	34, 174
MnlI	CCTC	9 cut(s)	133, 216, 346, 551, 667, 736, 793, 831, 879
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	659, 779, 892
MspA1I	CMGCKG	1 cut(s)	730
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	5 cut(s)	174, 175, 347, 789, 806
MunI	CAATTG	2 cut(s)	477, 603
MvaI	CCWGG	3 cut(s)	347, 789, 806
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	133, 558
NciI	CCSGG	2 cut(s)	174, 175
NdeII	GATC	2 cut(s)	364, 563
NheI	GCTAGC	1 cut(s)	236
NlaIII	CATG	4 cut(s)	68, 372, 416, 841
NmuCI	GTSAC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	298, 724
PkrI	GCNGC	6 cut(s)	158, 359, 645, 732, 811, 819
PleI	GAGTC	2 cut(s)	33, 174
PpsI	GAGTC	2 cut(s)	33, 174
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	345, 787, 804
PspGI	CCWGG	3 cut(s)	345, 787, 804
PspPI	GGNCC	1 cut(s)	802
PstNI	CAGNNNCTG	2 cut(s)	223, 788
PsuI	RGATCY	2 cut(s)	364, 563
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	659, 779, 892
SatI	GCNGC	6 cut(s)	157, 358, 644, 731, 810, 818
Sau3AI	GATC	2 cut(s)	364, 563
Sau96I	GGNCC	1 cut(s)	802
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	2 cut(s)	34, 174
ScrFI	CCNGG	5 cut(s)	174, 175, 347, 789, 806
SduI	GDGCHC	2 cut(s)	129, 708
SfaNI	GCATC	2 cut(s)	19, 223
SmaI	CCCGGG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	40, 114
SmoI	CTYRAG	2 cut(s)	40, 114
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	4 cut(s)	226, 477, 603, 624
SsiI	CCGC	4 cut(s)	583, 643, 810, 859
SspMI	CTAG	6 cut(s)	137, 168, 201, 237, 243, 396
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	5 cut(s)	172, 173, 345, 787, 804
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	856
TasI	AATT	4 cut(s)	226, 477, 603, 624
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	2 cut(s)	646, 812
TfiI	GAWTC	2 cut(s)	298, 724
Tru1I	TTAA	3 cut(s)	659, 779, 892
Tru9I	TTAA	3 cut(s)	659, 779, 892
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	4 cut(s)	156, 357, 730, 817
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	4 cut(s)	303, 401, 627, 648
TspGWI	ACGGA	2 cut(s)	179, 198
TspMI	CCCGGG	1 cut(s)	173
TspRI	CASTG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	226
XmaI	CCCGGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	6 cut(s)	137, 168, 201, 237, 243, 396
ZrmI	AGTACT	1 cut(s)	199
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.