Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005611

Physical Location & Seq

Genomic Coordinates Reverse (-)

21402032 .. 21406268

Gene Structure 4237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0133200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGAGTGCAAAACATAGTCACTCTGAAGAATTTAATTGCATGGGATTGAAGCTTGGAGAATTAGCAGATGCGGCCGAAAAGTACCATCTAATTCTCGCTGAGAAGGTTTTTGCTAATGTACCTAAAGTTAGTGTTGTTTCTTGGAATGTCGTGGTAACTGGGTACGACCTGATATTTCAGAATCAAAAAGCTATCGAATATCTACGAAGAATGAAATTTTGGGGCTTTCCTGATATTGCTGATGGGGATAAGGAGCTTACTATTTCCTTGCTTTGGAATATGTTTGTTCATTTGCGGCTACCTCCTTTGGTCAAGAAAACAACATTGGCTGCTGAAATATGCAACATCCAGGGAAACTTGGATAGCTTCATTAATGTTGAATTTACGAGTTTGGAGTTACTGCACAATGGGTATCACATTGATCAAGGAGGTGTCAAGGCTGTTATTGTAATTGTAATTATTCAATTGCGTTCAAATGAAGCTGCTGAGATCTACAAGGAGTTGAATATGATGGCAGGGAGTGCATATAAGTTGGTGAAAACGTGGAAAAGTGGAATTGATGATTCCAGTTTTTTCAATTCTTCAGACAATATGAATCGTTTGCCCTCTTCACCTCATAGGCAACATATTATGAAATTCTTTGTCAAGTACTTCTTTCCAGTTTATAGTGCACTTGCTAAATCAGACCAATTACCTTGTCTTCATGCTTTGGAGGTTATCTTGGTGGAATGCTCAGCCGCACTTGAGAAATATTGGATGTTGGTTGTTGTCTCAGAAGTTTTAATGTTTACAACTTATGGTGTCAAAGAAGTTCATGCAAGTCGCTTTTTCTTTATGAGAAATGTTAATGCTCTAGATCAGTTTGTCGAAGCACTTGGATCAATAGTAAATGGTAAAGCTATGATGGCGTTGTACACAAATATTGGACTCCATAATTTACTACTAACTTCTCAGAGCCCAACACTTGGAATTGAGTTGTTGTTTTCAAAGATGAAATTCATAGAAGTACTATCCATGAAAATGTTTGGCACGATTTTGACCCAAGAATGGGATCGTAAGGACATGGTTGCTTCGGGAGCCACCACTCAAGGCCACATGCTACATGACAAGGCTACTGAATTTTCCCTTGAACTCAATCAAGCCAATGCATGTACACTATTAAGTAATTATGGTCATGGGAAGATGGAAAGATTGGTGCAAGAGAGTGAAGAGACCAATGGAAAATGTAATGCACCTCCAATTACAGTTTCAAAAGAAAATGAACATGTCAAGACTCATGCTGGAAGCTCAACTTTGAATGTGGATAGAGTAAAAGTATCTCATCACTTGGAGGACAAATCTGATGTGCTCAGGGCCACACAAATGACCAACCTTGAAGAGAAAAATGACTTGTTCCCTTACTTTCTTCATTGGGGTATCACGTTGATCGTCTTCTACTTTGAGTTTGTCTCTACTATCTCCATTTATGGTTGCTTCTTGCATAACAATTTGGGTGCTGCTTTTGACAATTCGATGGATATCGAGCTGGTCAGCATAGTTGCTTATGCTCTTGAAACTTCACTCCATGCTTTTCACAGGGACAAGTTTTGGAAGAAATTTCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

535

Amino Acids

60.61

Weight (kDa)

6.19

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04890 AT4G13630 AT4G13630
fragaria_vesca	FvH4_4g15740 FvH4_4g15740
malus_domestica	MD04G1008700.v1.1 MD13G1285200.v1.1
prunus_persica	Prupe.1G008000_v2.0.a1 Prupe.1G008000_v2.0.a1 Prupe.1G008000_v2.0.a1 Prupe.1G008000_v2.0.a1
pyrus_communis	pycom04g00640 pycom04g00650 pycom420g01380
rosa_chinensis	RchiOBHm_Chr4g0415341
rosa_laevigata	RLG00000008078
rosa_multiflora	Rmu_sc0003551.1_g000001 Rmu_sc0028326.1_g000005
rosa_roxburghii	Rroxscaffold_5G00359120
rosa_rugosa	Rorug04G0133000 Rorug04G0133100 Rorug04G0133100 Rorug04G0133200
rosa_samantha	Rh4AG194100 Rh4BG192500 Rh4CG205100 Rh4DG191800
rosa_wichuraiana	Rw4G016510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	965
AciI	CCGC	3 cut(s)	71, 295, 738
AclWI	GGATC	2 cut(s)	886, 1059
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	7 cut(s)	29, 215, 380, 635, 995, 1118, 1595
AcuI	CTGAAG	2 cut(s)	45, 567
AfaI	GTAC	7 cut(s)	83, 120, 164, 650, 914, 1008, 1153
AfiI	CCNNNNNNNGG	4 cut(s)	273, 965, 1047, 1048
AflIII	ACRYGT	1 cut(s)	1264
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	6 cut(s)	202, 234, 308, 340, 1231, 1263
AluBI	AGCT	8 cut(s)	52, 191, 256, 366, 482, 899, 1287, 1525
AluI	AGCT	8 cut(s)	52, 191, 256, 366, 482, 899, 1287, 1525
Alw21I	GWGCWC	2 cut(s)	673, 1350
Alw26I	GTCTC	3 cut(s)	775, 1205, 1453
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	2 cut(s)	886, 1059
AoxI	GGCC	3 cut(s)	72, 1090, 1353
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	329, 482, 1496
ApoI	RAATTY	7 cut(s)	29, 215, 380, 635, 995, 1118, 1595
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	1353
AsuHPI	GGTGA	2 cut(s)	547, 603
BaeGI	GKGCMC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	959
BbsI	GAAGAC	2 cut(s)	692, 1423
Bbv12I	GWGCWC	2 cut(s)	673, 1350
BbvI	GCAGC	3 cut(s)	316, 469, 1483
BccI	CCATC	6 cut(s)	93, 236, 505, 898, 1177, 1507
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	775, 1205, 1453
BfaI	CTAG	1 cut(s)	854
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	6 cut(s)	72, 296, 330, 483, 738, 1497
BlpI	GCTNAGC	1 cut(s)	733
BlsI	GCNGC	6 cut(s)	73, 297, 331, 484, 739, 1498
BmcAI	AGTACT	2 cut(s)	650, 1008
Bme1390I	CCNGG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	1353
BmiI	GGNNCC	1 cut(s)	1078
BmrFI	CCNGG	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	2 cut(s)	692, 1423
BplI	GAGNNNNNCTC	2 cut(s)	1433, 1465
Bpu10I	CCTNAGC	1 cut(s)	1349
Bpu1102I	GCTNAGC	1 cut(s)	733
BpuEI	CTTGAG	2 cut(s)	764, 1071
BsaBI	GATNNNNATC	1 cut(s)	1517
BsaI	GGTCTC	1 cut(s)	1205
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	4 cut(s)	273, 965, 1047, 1048
Bse1I	ACTGG	3 cut(s)	163, 567, 659
Bse8I	GATNNNNATC	1 cut(s)	1517
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	345, 762
BseJI	GATNNNNATC	1 cut(s)	1517
BseLI	CCNNNNNNNGG	4 cut(s)	273, 965, 1047, 1048
BseMII	CTCAG	6 cut(s)	90, 477, 747, 786, 965, 1363
BseNI	ACTGG	3 cut(s)	163, 567, 659
BseSI	GKGCMC	1 cut(s)	673
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	316, 469, 1483
BsgI	GTGCAG	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	74, 1092, 1355
BsiEI	CGRYCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	673, 1350
BslFI	GGGAC	1 cut(s)	1592
BslI	CCNNNNNNNGG	4 cut(s)	273, 965, 1047, 1048
BsmAI	GTCTC	3 cut(s)	775, 1205, 1453
BsmFI	GGGAC	1 cut(s)	1592
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	3 cut(s)	74, 1092, 1355
Bso31I	GGTCTC	1 cut(s)	1205
Bsp1286I	GDGCHC	3 cut(s)	673, 959, 1350
Bsp1407I	TGTACA	2 cut(s)	912, 1151
Bsp143I	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
Bsp1720I	GCTNAGC	1 cut(s)	733
BspACI	CCGC	3 cut(s)	71, 295, 738
BspANI	GGCC	3 cut(s)	74, 1092, 1355
BspCNI	CTCAG	6 cut(s)	91, 478, 746, 785, 964, 1362
BspLI	GGNNCC	1 cut(s)	1078
BspPI	GGATC	2 cut(s)	886, 1059
BspTNI	GGTCTC	1 cut(s)	1205
BsrGI	TGTACA	2 cut(s)	912, 1151
BsrI	ACTGG	3 cut(s)	163, 567, 659
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	1246
Bst6I	CTCTTC	3 cut(s)	613, 1203, 1371
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstAUI	TGTACA	2 cut(s)	912, 1151
BstDEI	CTNAG	6 cut(s)	99, 486, 733, 772, 951, 1349
BstF5I	GGATG	2 cut(s)	345, 762
BstKTI	GATC	6 cut(s)	424, 492, 859, 881, 1054, 1428
BstMAI	GTCTC	3 cut(s)	775, 1205, 1453
BstMBI	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 521, 905, 1076
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	3 cut(s)	1099, 1152, 1268
BstSCI	CCNGG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	673
BstV1I	GCAGC	3 cut(s)	316, 469, 1483
BstV2I	GAAGAC	2 cut(s)	692, 1423
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	74, 1092, 1355
BtsCI	GGATG	2 cut(s)	345, 762
Cfr13I	GGNCC	1 cut(s)	1353
Csp6I	GTAC	7 cut(s)	82, 119, 163, 649, 913, 1007, 1152
CviQI	GTAC	7 cut(s)	82, 119, 163, 649, 913, 1007, 1152
DdeI	CTNAG	6 cut(s)	99, 486, 733, 772, 951, 1349
DpnI	GATC	6 cut(s)	423, 491, 858, 880, 1053, 1427
DpnII	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	613, 1203, 1371
EarI	CTCTTC	3 cut(s)	613, 1203, 1371
EclXI	CGGCCG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	959
Eco31I	GGTCTC	1 cut(s)	1205
Eco32I	GATATC	1 cut(s)	1519
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	45, 567
EcoRII	CCWGG	1 cut(s)	348
EcoRV	GATATC	1 cut(s)	1519
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	959
FalI	AAGNNNNNCTT	4 cut(s)	638, 670, 1276, 1308
FaqI	GGGAC	1 cut(s)	1592
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	6 cut(s)	72, 296, 330, 483, 738, 1497
FokI	GGATG	2 cut(s)	332, 769
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	6 cut(s)	72, 296, 330, 483, 738, 1497
FspBI	CTAG	1 cut(s)	854
GluI	GCNGC	6 cut(s)	72, 296, 330, 483, 738, 1497
HaeIII	GGCC	3 cut(s)	74, 1092, 1355
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	5 cut(s)	181, 563, 595, 927, 1273
HphI	GGTGA	2 cut(s)	547, 603
Hpy166II	GTNNAC	4 cut(s)	671, 789, 915, 1154
Hpy188I	TCNGA	7 cut(s)	25, 180, 586, 685, 775, 954, 1342
Hpy188III	TCNNGA	6 cut(s)	230, 313, 854, 1074, 1270, 1550
Hpy8I	GTNNAC	4 cut(s)	671, 789, 915, 1154
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	1246
HpyCH4IV	ACGT	2 cut(s)	542, 1421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 521, 905, 1076
HpyF3I	CTNAG	6 cut(s)	99, 486, 733, 772, 951, 1349
HpySE526I	ACGT	2 cut(s)	542, 1421
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
LmnI	GCTCC	2 cut(s)	253, 1076
Lsp1109I	GCAGC	3 cut(s)	316, 469, 1483
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	854
MaeII	ACGT	2 cut(s)	542, 1421
MaeIII	GTNAC	3 cut(s)	17, 154, 396
MalI	GATC	6 cut(s)	423, 491, 858, 880, 1053, 1427
MboI	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	673, 959, 1350
MlyI	GAGTC	2 cut(s)	921, 1267
MnlI	CCTC	7 cut(s)	312, 422, 616, 624, 706, 1245, 1324
Mph1103I	ATGCAT	1 cut(s)	1150
MseI	TTAA	5 cut(s)	33, 372, 782, 846, 1160
MslI	CAYNNNNRTG	2 cut(s)	1019, 1361
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	4 cut(s)	71, 521, 905, 1076
NdeII	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
NlaIV	GGNNCC	1 cut(s)	1078
NmuCI	GTSAC	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	1150
NspI	RCATGY	3 cut(s)	1099, 1152, 1268
PciI	ACATGT	1 cut(s)	1264
PctI	GAATGC	1 cut(s)	734
PfeI	GAWTC	3 cut(s)	181, 563, 595
PflMI	CCANNNNNTGG	1 cut(s)	965
PkrI	GCNGC	6 cut(s)	73, 297, 331, 484, 739, 1498
PleI	GAGTC	2 cut(s)	921, 1267
PpsI	GAGTC	2 cut(s)	921, 1267
PscI	ACATGT	1 cut(s)	1264
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	1078
PspPI	GGNCC	1 cut(s)	1353
PsuI	RGATCY	1 cut(s)	489
RsaI	GTAC	7 cut(s)	83, 120, 164, 650, 914, 1008, 1153
RsaNI	GTAC	7 cut(s)	82, 119, 163, 649, 913, 1007, 1152
RseI	CAYNNNNRTG	2 cut(s)	1019, 1361
SaqAI	TTAA	5 cut(s)	33, 372, 782, 846, 1160
SatI	GCNGC	6 cut(s)	72, 296, 330, 483, 738, 1497
Sau3AI	GATC	6 cut(s)	421, 489, 856, 878, 1051, 1425
Sau96I	GGNCC	1 cut(s)	1353
ScaI	AGTACT	2 cut(s)	650, 1008
SchI	GAGTC	2 cut(s)	921, 1267
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	3 cut(s)	673, 959, 1350
SfaNI	GCATC	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	1019, 1361
SmlI	CTYRAG	2 cut(s)	743, 1086
SmoI	CTYRAG	2 cut(s)	743, 1086
SsiI	CCGC	3 cut(s)	71, 295, 738
SspI	AATATT	2 cut(s)	752, 922
SspMI	CTAG	1 cut(s)	854
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	1246
TaiI	ACGT	2 cut(s)	545, 1424
TaqI	TCGA	4 cut(s)	195, 867, 1511, 1521
TatI	WGTACW	4 cut(s)	648, 912, 1006, 1151
TauI	GCSGC	3 cut(s)	74, 298, 740
TfiI	GAWTC	3 cut(s)	181, 563, 595
Tru1I	TTAA	5 cut(s)	33, 372, 782, 846, 1160
Tru9I	TTAA	5 cut(s)	33, 372, 782, 846, 1160
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	329, 482, 1496
Tsp45I	GTSAC	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	965
VneI	GTGCAC	1 cut(s)	669
VspI	ATTAAT	1 cut(s)	372
XapI	RAATTY	7 cut(s)	29, 215, 380, 635, 995, 1118, 1595
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	3 cut(s)	1099, 1152, 1268
XspI	CTAG	1 cut(s)	854
ZrmI	AGTACT	2 cut(s)	650, 1008
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.