Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Forward (+)

21392511 .. 21395323

Gene Structure 2813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0133000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGTCGAGTGTTCCTCTGTAAATCGCTCCTCCTAACACCTTCTCTCTATTCCGCTCCCCTCACCTCCTTGAAGCCCACACTCACCTCTGCTTCTTCTTCTTCTTCTTCTAGGGTTCGCCGTATGGCCACCGAAGCTTCGTCGTCACCGTCATCCCACACCGGCGGTGACGCCATCAACCCCGACCCAACCTCTTCGTCTCCTCCCGCCTCCTCTGCCATTGATTTTCTCTCCCTCTGCCACCGCCTTAAGACGACGAAAAGAGCTGGATGGGTTAAGAGAGATGTGAAGGATCCAGAGTCTGTAGCTGACCATATGTACCGCATGGGATTAATGGCTCTCATTGCTTCGGATATTCCTGGTGTCAATCGAGACAAGTGCATAAAGATCGCCATTGTTCATGACATTGCTGAAGCTATTGTTGGGGATATAACCCCCGCAGATGGGGTACCAAAGGCAGAGAAGAACCGAAGAGAACAAGAGGCAATAGACCACATGTGCAAATTACTTGGTGGAGGCTCAATAGCCAAGGAAATAGGTGAATTGTGGATGGAGTATGAGGGGAATTCCTCCCCAGAAGCTCAAATTGTCAAGGACTTTGACAAGGTGGAGATGATACTTCAAGCCTTGGAATATGAGAATGGTCAAGGAAAGGACTTGGATGAGTTTTTCCAGTCAACTGCTGGGAAGTTCCAGACTGATGTAGGCAAAGCTTGGGCAGCAGAGATAGTATCCAGAAGAAAAAAACAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

251

Amino Acids

27.23

Weight (kDa)

6.53

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YfbR-like	PF12917	76 - 219	3.3e-06	5'-deoxynucleotidase YfbR-like
HD_3	PF13023	81 - 238	2.7e-48	HD domain
HD	PF01966	102 - 205	2.9e-11	HD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AccBSI	CCGCTC	1 cut(s)	56
AciI	CCGC	6 cut(s)	54, 165, 207, 244, 322, 438
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	320, 450
AfiI	CCNNNNNNNGG	2 cut(s)	443, 444
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	2 cut(s)	73, 623
AjnI	CCWGG	1 cut(s)	358
AjuI	GAANNNNNNNTTGG	2 cut(s)	405, 437
AluBI	AGCT	6 cut(s)	137, 266, 308, 416, 581, 713
AluI	AGCT	6 cut(s)	137, 266, 308, 416, 581, 713
Alw26I	GTCTC	2 cut(s)	204, 366
AlwI	GGATC	2 cut(s)	287, 300
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	1 cut(s)	565
AseI	ATTAAT	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	448
AsuHPI	GGTGA	5 cut(s)	55, 76, 138, 179, 551
BalI	TGGCCA	1 cut(s)	128
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	4 cut(s)	182, 264, 437, 544
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	4 cut(s)	360, 370, 394, 404
BciT130I	CCWGG	1 cut(s)	360
BciVI	GTATCC	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	204, 366
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	742
BisI	GCNGC	1 cut(s)	720
BlsI	GCNGC	1 cut(s)	721
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	2 cut(s)	294, 450
BmrFI	CCNGG	1 cut(s)	360
BplI	GAGNNNNNCTC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	528, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 444
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	2 cut(s)	342, 405
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	528, 627
BseGI	GGATG	4 cut(s)	152, 275, 555, 667
BseLI	CCNNNNNNNGG	2 cut(s)	443, 444
BseMI	GCAATG	2 cut(s)	342, 405
BseNI	ACTGG	1 cut(s)	673
BseRI	GAGGAG	3 cut(s)	20, 192, 202
BseXI	GCAGC	1 cut(s)	731
BseYI	CCCAGC	1 cut(s)	683
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	443, 444
BsmAI	GTCTC	2 cut(s)	204, 366
BsmBI	CGTCTC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	292, 387
BspACI	CCGC	6 cut(s)	54, 165, 207, 244, 322, 438
BspANI	GGCC	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	294, 450
BspPI	GGATC	2 cut(s)	287, 300
BspT107I	GGYRCC	1 cut(s)	448
BspTI	CTTAAG	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	342, 405
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	673
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	528, 627
BssMI	GATC	2 cut(s)	292, 387
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	528, 627
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	2 cut(s)	199, 466
BstACI	GRCGYC	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	152, 275, 555, 667
BstKTI	GATC	2 cut(s)	295, 390
BstMAI	GTCTC	2 cut(s)	204, 366
BstMBI	GATC	2 cut(s)	292, 387
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 215, 344, 719
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	358
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	742
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	4 cut(s)	152, 275, 555, 667
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	161
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	319, 449
CviAII	CATG	3 cut(s)	325, 401, 496
CviQI	GTAC	2 cut(s)	319, 449
DpnI	GATC	2 cut(s)	294, 389
DpnII	GATC	2 cut(s)	292, 387
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	199, 466
EarI	CTCTTC	2 cut(s)	199, 466
Eco130I	CCWWGG	2 cut(s)	528, 627
Eco57I	CTGAAG	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	528, 627
ErhI	CCWWGG	2 cut(s)	528, 627
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	3 cut(s)	328, 404, 499
FatI	CATG	3 cut(s)	324, 400, 495
FauI	CCCGC	2 cut(s)	214, 445
FauNDI	CATATG	1 cut(s)	315
Fnu4HI	GCNGC	1 cut(s)	720
FokI	GGATG	4 cut(s)	139, 282, 562, 674
Fsp4HI	GCNGC	1 cut(s)	720
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	1 cut(s)	720
GsaI	CCCAGC	1 cut(s)	687
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	328, 404, 499
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	2 cut(s)	135, 711
HinfI	GANTC	2 cut(s)	4, 299
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	5 cut(s)	55, 76, 138, 179, 551
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	5 cut(s)	296, 371, 401, 694, 735
Hpy8I	GTNNAC	1 cut(s)	678
Hpy99I	CGWCG	2 cut(s)	145, 259
HpyAV	CCTTC	2 cut(s)	51, 283
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	381, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 215, 344, 719
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	328, 404, 499
KpnI	GGTACC	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	292, 387
LmnI	GCTCC	2 cut(s)	33, 61
Lsp1109I	GCAGC	1 cut(s)	731
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	144, 167
MalI	GATC	2 cut(s)	294, 389
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	292, 387
MboII	GAAGA	9 cut(s)	87, 90, 93, 96, 99, 186, 475, 483, 750
MflI	RGATCY	1 cut(s)	292
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	4 cut(s)	503, 542, 565, 585
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	13, 308
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	249, 276, 332
Msp20I	TGGCCA	1 cut(s)	128
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	4 cut(s)	134, 215, 344, 719
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	2 cut(s)	292, 387
NlaIII	CATG	3 cut(s)	328, 404, 499
NlaIV	GGNNCC	2 cut(s)	294, 450
NmuCI	GTSAC	2 cut(s)	144, 167
NspI	RCATGY	1 cut(s)	499
PagI	TCATGA	1 cut(s)	400
PciI	ACATGT	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	721
PleI	GAGTC	2 cut(s)	12, 307
PpsI	GAGTC	2 cut(s)	12, 307
PscI	ACATGT	1 cut(s)	495
PshBI	ATTAAT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	294, 450
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	2 cut(s)	320, 450
RsaNI	GTAC	2 cut(s)	319, 449
SaqAI	TTAA	3 cut(s)	249, 276, 332
SatI	GCNGC	1 cut(s)	720
Sau3AI	GATC	2 cut(s)	292, 387
SchI	GAGTC	2 cut(s)	13, 308
ScrFI	CCNGG	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	303
SgrAI	CRCCGGYG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	4 cut(s)	503, 542, 565, 585
SsiI	CCGC	6 cut(s)	54, 165, 207, 244, 322, 438
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	2 cut(s)	528, 627
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	7, 370
TasI	AATT	4 cut(s)	503, 542, 565, 585
Tru1I	TTAA	3 cut(s)	249, 276, 332
Tru9I	TTAA	3 cut(s)	249, 276, 332
TseFI	GTSAC	2 cut(s)	144, 167
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	2 cut(s)	144, 167
TspDTI	ATGAA	1 cut(s)	389
Vha464I	CTTAAG	1 cut(s)	248
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.