Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

36465210 .. 36466944

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAGCGATCAATTGCAAGCAATGAAAACTTGGACGTGTCGGAATCAGTCGGAGAGGAAACTGCGCCAACGTCAAAGGATGAAGGAACCTCCTCCACCGGCGCCTCCTTGACGACTGATCTGAGCTTCGAATGCCGAATTTGTCAGACGGAAGACTCCATCGACCACATGGAGGCTCCTTGCCGGTGCAATGGCACCTTAAAGTTTACGCACAGAGCTTGCATCCAGCAATGGATCAACTCTCGTTTCAAGACCACTTGCGAGATCTGTAATCAGCCATATAAGGGTGATTATAGAGTAACGGTGCCACCCCCTGCATCGCCGCCGCAGCCCACGAATAGGCAGATTGAGGAGATTCGGAGGGTATTGGAGGAGGCTGAAAGGTTGCATGCTGCGGCAGCAAGAGCAGAGGTATACCTCGCTCGACTTAATGCGGCAAACAATGCCGTTTTAAGTCGAAGTGCTCTTTGCCGCATTGCTGTTCTCGTTGTTTTCGGTTTATACATTCTGATCATAGCGAGTAATTTAAGCGGCCTTCAGATTGGGGTTGGACGGCCTTCACCTTTGGCTTCACCGTCACCGTCACCGTCGCCGTCACCTCAGCCTCAGTCATCTACTCAATTCACCAACAATAATCCGGGTGACTGGCGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

219

Amino Acids

23.76

Weight (kDa)

6.32

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	45 - 90	3.9e-13	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	101, 194, 304
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	6 cut(s)	323, 326, 395, 434, 472, 531
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	3 cut(s)	172, 284, 339
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	250
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	2 cut(s)	126, 218
AluI	AGCT	2 cut(s)	126, 218
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	532, 554
ApeKI	GCWGC	3 cut(s)	328, 392, 398
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	67, 104
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	8 cut(s)	299, 552, 564, 570, 576, 588, 616, 653
AsuII	TTCGAA	1 cut(s)	129
BanI	GGYRCC	3 cut(s)	101, 194, 304
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	466
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	3 cut(s)	340, 379, 410
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	3 cut(s)	431, 569, 577
BclI	TGATCA	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	105
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	9 cut(s)	323, 326, 329, 393, 396, 399, 435, 472, 532
BlsI	GCNGC	9 cut(s)	324, 327, 330, 394, 397, 400, 436, 473, 533
Bme1390I	CCNGG	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	37
BmiI	GGNNCC	5 cut(s)	88, 103, 177, 196, 306
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	231, 326
BpiI	GAAGAC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 284, 339
Bse118I	RCCGGY	2 cut(s)	98, 183
Bse1I	ACTGG	1 cut(s)	650
Bse3DI	GCAATG	4 cut(s)	28, 196, 236, 474
BseGI	GGATG	2 cut(s)	85, 222
BseLI	CCNNNNNNNGG	3 cut(s)	172, 284, 339
BseMI	GCAATG	4 cut(s)	28, 196, 236, 474
BseMII	CTCAG	3 cut(s)	113, 614, 620
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	3 cut(s)	82, 365, 386
BseXI	GCAGC	3 cut(s)	340, 379, 410
BshFI	GGCC	2 cut(s)	534, 556
BshNI	GGYRCC	3 cut(s)	101, 194, 304
BsiHKAI	GWGCWC	1 cut(s)	466
BsiSI	CCGG	3 cut(s)	99, 184, 638
BslI	CCNNNNNNNGG	3 cut(s)	172, 284, 339
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	534, 556
Bsp119I	TTCGAA	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	5 cut(s)	8, 118, 234, 264, 510
BspACI	CCGC	6 cut(s)	323, 326, 395, 434, 472, 531
BspANI	GGCC	2 cut(s)	534, 556
BspCNI	CTCAG	3 cut(s)	114, 613, 619
BspLI	GGNNCC	5 cut(s)	88, 103, 177, 196, 306
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	129
BspT107I	GGYRCC	3 cut(s)	101, 194, 304
BsrDI	GCAATG	4 cut(s)	28, 196, 236, 474
BsrFI	RCCGGY	2 cut(s)	98, 183
BsrI	ACTGG	1 cut(s)	650
BssAI	RCCGGY	2 cut(s)	98, 183
BssMI	GATC	5 cut(s)	8, 118, 234, 264, 510
BssNAI	GTATAC	1 cut(s)	415
BssNI	GRCGYC	1 cut(s)	102
Bst1107I	GTATAC	1 cut(s)	415
Bst4CI	ACNGT	4 cut(s)	304, 576, 582, 588
BstACI	GRCGYC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	19, 220, 390
BstDEI	CTNAG	3 cut(s)	122, 600, 606
BstF5I	GGATG	2 cut(s)	85, 222
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	67, 104
BstKTI	GATC	5 cut(s)	11, 121, 237, 267, 513
BstMBI	GATC	5 cut(s)	8, 118, 234, 264, 510
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 328, 398, 404, 443
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	637
BstV1I	GCAGC	3 cut(s)	340, 379, 410
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZ17I	GTATAC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	534, 556
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	85, 222
Cac8I	GCNNGC	3 cut(s)	19, 220, 390
CfoI	GCGC	2 cut(s)	67, 104
Cfr10I	RCCGGY	2 cut(s)	98, 183
CviAII	CATG	2 cut(s)	169, 389
DdeI	CTNAG	3 cut(s)	122, 600, 606
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	5 cut(s)	10, 120, 236, 266, 512
DpnII	GATC	5 cut(s)	8, 118, 234, 264, 510
Eco57I	CTGAAG	1 cut(s)	521
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
FaeI	CATG	2 cut(s)	172, 392
FaiI	YATR	8 cut(s)	170, 280, 282, 294, 390, 415, 502, 515
FatI	CATG	2 cut(s)	168, 388
FbaI	TGATCA	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	9 cut(s)	323, 326, 329, 393, 396, 399, 435, 472, 532
FokI	GGATG	2 cut(s)	92, 209
Fsp4HI	GCNGC	9 cut(s)	323, 326, 329, 393, 396, 399, 435, 472, 532
GlaI	GCGC	2 cut(s)	66, 103
GluI	GCNGC	9 cut(s)	323, 326, 329, 393, 396, 399, 435, 472, 532
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	534, 556
HapII	CCGG	3 cut(s)	99, 184, 638
HhaI	GCGC	2 cut(s)	67, 104
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	172, 392
Hin6I	GCGC	2 cut(s)	65, 102
HinP1I	GCGC	2 cut(s)	65, 102
HinfI	GANTC	3 cut(s)	44, 155, 355
HpaII	CCGG	3 cut(s)	99, 184, 638
HphI	GGTGA	8 cut(s)	299, 552, 564, 570, 576, 588, 616, 653
Hpy166II	GTNNAC	2 cut(s)	207, 415
Hpy188I	TCNGA	7 cut(s)	43, 53, 123, 147, 360, 510, 540
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	207, 415
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	3 cut(s)	77, 545, 567
HpyCH4III	ACNGT	4 cut(s)	304, 576, 582, 588
HpyCH4IV	ACGT	2 cut(s)	36, 71
HpyCH4V	TGCA	5 cut(s)	17, 189, 222, 317, 388
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 328, 398, 404, 443
HpyF3I	CTNAG	3 cut(s)	122, 600, 606
HpySE526I	ACGT	2 cut(s)	36, 71
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	172, 392
HspAI	GCGC	2 cut(s)	65, 102
KasI	GGCGCC	1 cut(s)	101
Ksp22I	TGATCA	1 cut(s)	510
Kzo9I	GATC	5 cut(s)	8, 118, 234, 264, 510
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	6 cut(s)	112, 197, 239, 327, 631, 651
Lsp1109I	GCAGC	3 cut(s)	340, 379, 410
LweI	GCATC	2 cut(s)	231, 326
MaeII	ACGT	2 cut(s)	36, 71
MaeIII	GTNAC	5 cut(s)	298, 576, 582, 594, 641
MalI	GATC	5 cut(s)	10, 120, 236, 266, 512
MboI	GATC	5 cut(s)	8, 118, 234, 264, 510
MboII	GAAGA	1 cut(s)	164
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	4 cut(s)	12, 138, 523, 620
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	3 cut(s)	21, 31, 529
MseI	TTAA	4 cut(s)	200, 429, 452, 527
MspI	CCGG	3 cut(s)	99, 184, 638
MspR9I	CCNGG	1 cut(s)	639
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	5 cut(s)	132, 328, 398, 404, 443
NarI	GGCGCC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	5 cut(s)	8, 118, 234, 264, 510
NlaIII	CATG	2 cut(s)	172, 392
NlaIV	GGNNCC	5 cut(s)	88, 103, 177, 196, 306
NmuCI	GTSAC	4 cut(s)	576, 582, 594, 641
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	129
PaeI	GCATGC	1 cut(s)	392
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	44, 355
PkrI	GCNGC	9 cut(s)	324, 327, 330, 394, 397, 400, 436, 473, 533
PleI	GAGTC	1 cut(s)	149
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	149
PspN4I	GGNNCC	5 cut(s)	88, 103, 177, 196, 306
PsuI	RGATCY	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	200, 429, 452, 527
SatI	GCNGC	9 cut(s)	323, 326, 329, 393, 396, 399, 435, 472, 532
Sau3AI	GATC	5 cut(s)	8, 118, 234, 264, 510
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	231, 326
SfoI	GGCGCC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	129
SgrAI	CRCCGGYG	1 cut(s)	98
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	4 cut(s)	12, 138, 523, 620
SsiI	CCGC	6 cut(s)	323, 326, 395, 434, 472, 531
SspDI	GGCGCC	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	637
TaaI	ACNGT	4 cut(s)	304, 576, 582, 588
TaiI	ACGT	2 cut(s)	39, 74
TaqI	TCGA	4 cut(s)	129, 162, 424, 457
TasI	AATT	4 cut(s)	12, 138, 523, 620
TauI	GCSGC	6 cut(s)	325, 328, 398, 437, 474, 534
TfiI	GAWTC	2 cut(s)	44, 355
Tru1I	TTAA	4 cut(s)	200, 429, 452, 527
Tru9I	TTAA	4 cut(s)	200, 429, 452, 527
TseFI	GTSAC	4 cut(s)	576, 582, 594, 641
TseI	GCWGC	3 cut(s)	328, 392, 398
Tsp45I	GTSAC	4 cut(s)	576, 582, 594, 641
TspDTI	ATGAA	3 cut(s)	17, 39, 96
TspGWI	ACGGA	1 cut(s)	164
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.