MD17G1041600.v1.1

zinc ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0003694
Physical Location & Seq
Reverse (-)
3035899 .. 3036772
874 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1041600.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGAGACCGGGAGCAAGATGGCAGAGAAATCGGCGGCCTCCGGCGAAAGTAGTAGCACTGAAGCAATGGAGAAAGTAGAGGCGTTGGGTGAAGACATAAAAGCAGGTCATGGATCCTCGAATGAGAACATAGAAGAAGGGCAGGGATCTCGTATTGGAGAACAAAATGAATGCAGAATTTGCCAGGAGGAGGATTACCTTCACAAACTCGAAGCTCCTTGCCGCTGCAACGGCACACTTAAGTTTGCTCACAGGGATTGCATTCAAAAGTGGATCAACGAGAGGCTAAGTATGACTTGTGAAATCTGCAACCAGCCCTATGAGGCCGGATATACGATGGTGATACCCCCACCACCGCCTGGTGCTCAAACAGAAAATGTCACTGTTGGCATCAGGCAAGTCCAATGCCCCAAAGCTATAGTTATAACCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DUF3675 RINGv

Protein Analysis

145

Amino Acids

15.76

Weight (kDa)

4.92

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 58 - 103 7e-14 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 359
AciI CCGC 3 cut(s) 35, 223, 356
AclWI GGATC 4 cut(s) 108, 121, 154, 281
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 190, 359
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 2 cut(s) 183, 358
AluBI AGCT 2 cut(s) 215, 416
AluI AGCT 2 cut(s) 215, 416
Alw21I GWGCWC 1 cut(s) 367
AlwI GGATC 4 cut(s) 108, 121, 154, 281
AoxI GGCC 2 cut(s) 36, 324
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 101, 352
BamHI GGATCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 212
BccI CCATC 2 cut(s) 13, 331
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 4 cut(s) 12, 46, 131, 165
BciT130I CCWGG 2 cut(s) 185, 360
BcnI CCSGG 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 417
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 3 cut(s) 36, 223, 226
BlsI GCNGC 3 cut(s) 37, 224, 227
Bme1390I CCNGG 3 cut(s) 10, 185, 360
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 3 cut(s) 10, 185, 360
BmsI GCATC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 359
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 2 cut(s) 185, 360
BseLI CCNNNNNNNGG 2 cut(s) 190, 359
BseMI GCAATG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 38, 326
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 3 cut(s) 9, 42, 327
BslI CCNNNNNNNGG 2 cut(s) 190, 359
BsmI GAATGC 2 cut(s) 176, 261
BsnI GGCC 2 cut(s) 38, 326
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 113, 146, 273
BspACI CCGC 3 cut(s) 35, 223, 356
BspANI GGCC 2 cut(s) 38, 326
BspLI GGNNCC 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 4 cut(s) 108, 121, 154, 281
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 3 cut(s) 113, 146, 273
Bst2UI CCWGG 2 cut(s) 185, 360
Bst4CI ACNGT 1 cut(s) 385
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 287
BstKTI GATC 3 cut(s) 116, 149, 276
BstMBI GATC 3 cut(s) 113, 146, 273
BstMWI GCNNNNNNNGC 2 cut(s) 180, 231
BstNI CCWGG 2 cut(s) 185, 360
BstSCI CCNGG 3 cut(s) 8, 183, 358
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 2 cut(s) 113, 146
BstYI RGATCY 2 cut(s) 113, 146
BsuRI GGCC 2 cut(s) 38, 326
BtsIMutI CAGTG 2 cut(s) 57, 381
BveI ACCTGC 1 cut(s) 95
CviAII CATG 1 cut(s) 110
CviJI RGCY 6 cut(s) 38, 215, 286, 316, 326, 416
CviKI_1 RGCY 6 cut(s) 38, 215, 286, 316, 326, 416
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 115, 148, 275
DpnII GATC 3 cut(s) 113, 146, 273
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 183, 358
FaeI CATG 1 cut(s) 113
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 36, 223, 226
Fsp4HI GCNGC 3 cut(s) 36, 223, 226
GluI GCNGC 3 cut(s) 36, 223, 226
HaeIII GGCC 2 cut(s) 38, 326
HapII CCGG 3 cut(s) 9, 42, 327
Hin1II CATG 1 cut(s) 113
HpaII CCGG 3 cut(s) 9, 42, 327
HphI GGTGA 2 cut(s) 101, 352
HpyAV CCTTC 2 cut(s) 131, 209
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 4 cut(s) 174, 228, 261, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 231
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 1 cut(s) 113
Kzo9I GATC 3 cut(s) 113, 146, 273
LmnI GCTCC 2 cut(s) 12, 220
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 399
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 115, 148, 275
MboI GATC 3 cut(s) 113, 146, 273
MboII GAAGA 2 cut(s) 104, 146
MflI RGATCY 2 cut(s) 113, 146
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 1 cut(s) 177
MnlI CCTC 7 cut(s) 49, 73, 127, 181, 184, 276, 316
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 225
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 9, 42, 327
MspR9I CCNGG 3 cut(s) 10, 185, 360
Mva1269I GAATGC 2 cut(s) 176, 261
MvaI CCWGG 2 cut(s) 185, 360
MwoI GCNNNNNNNGC 2 cut(s) 180, 231
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 113, 146, 273
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 379
PctI GAATGC 2 cut(s) 176, 261
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 3 cut(s) 37, 224, 227
PsiI TTATAA 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 183, 358
PspGI CCWGG 2 cut(s) 183, 358
PspN4I GGNNCC 1 cut(s) 115
PsuI RGATCY 2 cut(s) 113, 146
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 3 cut(s) 36, 223, 226
Sau3AI GATC 3 cut(s) 113, 146, 273
ScrFI CCNGG 3 cut(s) 10, 185, 360
SduI GDGCHC 1 cut(s) 367
SetI ASST 4 cut(s) 109, 201, 217, 418
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 177
SsiI CCGC 3 cut(s) 35, 223, 356
StyD4I CCNGG 3 cut(s) 8, 183, 358
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 119, 210
TasI AATT 1 cut(s) 177
TauI GCSGC 2 cut(s) 38, 225
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 64, 388
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 2 cut(s) 64, 388
Van91I CCANNNNNTGG 1 cut(s) 359
Vha464I CTTAAG 1 cut(s) 239
XapI RAATTY 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.