Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

39156223 .. 39159984

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTGAATTCCAGCACTGATAAATCGGAGGTCTCCGTCGACGCTGCTGAAGTAGATTCAGAAGAAATGACAGAGGACATGGAAACCAAGCACATGTTGGAGCATGACCCATCCTTCTCCAACACGTGCATTGAATGCCGGATATGCCAGGTCGAGGACTCCATTGATGAAATGGAGTCTCCTTTGCCGGTGCAACGGCACCCTCAAGCACCACCGCCACGGCAGCCTACCAGGAGGGAGGCCCTGGACACTATAAGGGCTAGAAGAGCCCATGTGGCAGTAGACGCAGAGGTATATCGCGCTCGACTAAATGCGGCAAATAGTGCCATTTTAGGTCGAAGTTTTGTATGCCGCATTGCTCCTGTCATTGCAGCGGGTAACATAGGCGGCACCCGGCCATCACTTTCGAATCTGATCACCTTCACCGTCTCCCTCACCCAAGCCCCTAGTGCTGCTGATAATATACTACTCAAGGCAGGATTAATGGTGGAATTAAGAAAATCAGATCAATTCCAACTCCTACACTATACCGACGCATCCACCATTCCTCCTCCGATCCTTTTGTCATCAGATCCGAATAGCTTCCACCACCCTAAACATTTCGGCGTTGAAACTCACAATGTTGACCCCACTATGAGAATGCAAGTCGGACCACTCGCGGACCCGATCTGCCCAGCACCTCCTCGCCTCATGGGAATCCCATATCCTCCATTCTCATGGAGGAAAGTTTCAGATACCACAACTGCTAAGGCAGCCGCTCTCTACCCTAGCGAGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

259

Amino Acids

28.46

Weight (kDa)

5.71

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	198, 389
AccBSI	CCGCTC	1 cut(s)	758
AccI	GTMKAC	2 cut(s)	39, 282
AccII	CGCG	2 cut(s)	300, 659
AciI	CCGC	7 cut(s)	215, 314, 352, 374, 387, 659, 756
AclWI	GGATC	2 cut(s)	550, 566
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	69
AcvI	CACGTG	1 cut(s)	126
AfeI	AGCGCT	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	2 cut(s)	93, 123
AgsI	TTSAA	2 cut(s)	134, 611
AjnI	CCWGG	3 cut(s)	147, 230, 243
AluBI	AGCT	1 cut(s)	582
AluI	AGCT	1 cut(s)	582
Alw26I	GTCTC	3 cut(s)	37, 183, 433
AlwI	GGATC	2 cut(s)	550, 566
Aor51HI	AGCGCT	1 cut(s)	776
AoxI	GGCC	2 cut(s)	240, 395
ApeKI	GCWGC	5 cut(s)	44, 223, 371, 452, 752
ApoI	RAATTY	1 cut(s)	7
AseI	ATTAAT	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	302, 777
AspS9I	GGNCC	3 cut(s)	241, 650, 661
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	4 cut(s)	16, 409, 415, 427
AsuII	TTCGAA	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	650, 661
BanI	GGYRCC	2 cut(s)	198, 389
BanII	GRGCYC	1 cut(s)	271
BbrPI	CACGTG	1 cut(s)	126
BbvI	GCAGC	5 cut(s)	31, 235, 383, 439, 764
BccI	CCATC	2 cut(s)	118, 406
BceAI	ACGGC	2 cut(s)	212, 236
BciT130I	CCWGG	3 cut(s)	149, 232, 245
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	3 cut(s)	37, 183, 433
BfaI	CTAG	4 cut(s)	261, 447, 768, 778
BfoI	RGCGCY	1 cut(s)	778
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	9 cut(s)	45, 224, 315, 352, 372, 388, 453, 753, 756
BlsI	GCNGC	9 cut(s)	46, 225, 316, 353, 373, 389, 454, 754, 757
Bme1390I	CCNGG	4 cut(s)	149, 232, 245, 394
Bme18I	GGWCC	2 cut(s)	650, 661
BmgT120I	GGNCC	3 cut(s)	241, 650, 661
BmiI	GGNNCC	3 cut(s)	200, 391, 663
BmrFI	CCNGG	4 cut(s)	149, 232, 245, 394
BmsI	GCATC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu14I	TTCGAA	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	189, 455
BpuMI	CCSGG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	218, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	187
Bse3DI	GCAATG	2 cut(s)	354, 366
BseBI	CCWGG	3 cut(s)	149, 232, 245
BseDI	CCNNGG	2 cut(s)	218, 243
BseGI	GGATG	2 cut(s)	110, 536
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	2 cut(s)	354, 366
BseRI	GAGGAG	2 cut(s)	540, 672
BseXI	GCAGC	5 cut(s)	31, 235, 383, 439, 764
BseYI	CCCAGC	1 cut(s)	673
Bsh1236I	CGCG	2 cut(s)	300, 659
BshFI	GGCC	2 cut(s)	242, 397
BshNI	GGYRCC	2 cut(s)	198, 389
BsiSI	CCGG	3 cut(s)	139, 188, 394
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	3 cut(s)	37, 183, 433
BsmBI	CGTCTC	1 cut(s)	433
BsmI	GAATGC	2 cut(s)	140, 645
BsnI	GGCC	2 cut(s)	242, 397
Bso31I	GGTCTC	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	5 cut(s)	414, 505, 555, 571, 666
BspACI	CCGC	7 cut(s)	215, 314, 352, 374, 387, 659, 756
BspANI	GGCC	2 cut(s)	242, 397
BspFNI	CGCG	2 cut(s)	300, 659
BspLI	GGNNCC	3 cut(s)	200, 391, 663
BspPI	GGATC	2 cut(s)	550, 566
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	407
BspT107I	GGYRCC	2 cut(s)	198, 389
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	354, 366
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	218, 243
BssMI	GATC	5 cut(s)	414, 505, 555, 571, 666
Bst2UI	CCWGG	3 cut(s)	149, 232, 245
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	2 cut(s)	135, 323
BstBAI	YACGTR	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	773
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	110, 536
BstFNI	CGCG	2 cut(s)	300, 659
BstH2I	RGCGCY	1 cut(s)	778
BstHHI	GCGC	2 cut(s)	302, 777
BstKTI	GATC	5 cut(s)	417, 508, 558, 574, 669
BstMAI	GTCTC	3 cut(s)	37, 183, 433
BstMBI	GATC	5 cut(s)	414, 505, 555, 571, 666
BstMWI	GCNNNNNNNGC	9 cut(s)	135, 144, 223, 266, 275, 284, 323, 449, 752
BstNI	CCWGG	3 cut(s)	149, 232, 245
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	4 cut(s)	147, 230, 243, 392
BstUI	CGCG	2 cut(s)	300, 659
BstV1I	GCAGC	5 cut(s)	31, 235, 383, 439, 764
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	242, 397
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	110, 536
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	773
CfoI	GCGC	2 cut(s)	302, 777
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	241, 650, 661
CseI	GACGC	3 cut(s)	50, 293, 542
CviAII	CATG	6 cut(s)	79, 94, 104, 272, 691, 717
CviJI	RGCY	8 cut(s)	226, 242, 260, 269, 397, 443, 582, 755
CviKI_1	RGCY	8 cut(s)	226, 242, 260, 269, 397, 443, 582, 755
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	5 cut(s)	416, 507, 557, 573, 668
DpnII	GATC	5 cut(s)	414, 505, 555, 571, 666
EaeI	YGGCCR	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	650, 661
Eco47III	AGCGCT	1 cut(s)	776
Eco57I	CTGAAG	1 cut(s)	69
Eco72I	CACGTG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	147, 230, 243
EcoT38I	GRGCYC	1 cut(s)	271
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	6 cut(s)	82, 97, 107, 275, 694, 720
FatI	CATG	6 cut(s)	78, 93, 103, 271, 690, 716
FauI	CCCGC	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	2 cut(s)	39, 282
Fnu4HI	GCNGC	9 cut(s)	45, 224, 315, 352, 372, 388, 453, 753, 756
FokI	GGATG	2 cut(s)	97, 523
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	9 cut(s)	45, 224, 315, 352, 372, 388, 453, 753, 756
FspBI	CTAG	4 cut(s)	261, 447, 768, 778
GlaI	GCGC	2 cut(s)	301, 776
GluI	GCNGC	9 cut(s)	45, 224, 315, 352, 372, 388, 453, 753, 756
GsaI	CCCAGC	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	778
HaeIII	GGCC	2 cut(s)	242, 397
HapII	CCGG	3 cut(s)	139, 188, 394
HgaI	GACGC	3 cut(s)	50, 293, 542
HhaI	GCGC	2 cut(s)	302, 777
Hin1II	CATG	6 cut(s)	82, 97, 107, 275, 694, 720
Hin6I	GCGC	2 cut(s)	300, 775
HinP1I	GCGC	2 cut(s)	300, 775
HincII	GTYRAC	2 cut(s)	40, 625
HindII	GTYRAC	2 cut(s)	40, 625
HinfI	GANTC	5 cut(s)	56, 158, 176, 409, 696
HpaII	CCGG	3 cut(s)	139, 188, 394
HphI	GGTGA	4 cut(s)	16, 409, 415, 427
Hpy166II	GTNNAC	3 cut(s)	40, 283, 625
Hpy188I	TCNGA	9 cut(s)	28, 61, 414, 505, 555, 571, 576, 650, 733
Hpy8I	GTNNAC	3 cut(s)	40, 283, 625
Hpy99I	CGWCG	3 cut(s)	41, 44, 536
HpyAV	CCTTC	2 cut(s)	124, 430
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	4 cut(s)	129, 193, 371, 643
HpyF10VI	GCNNNNNNNGC	9 cut(s)	135, 144, 223, 266, 275, 284, 323, 449, 752
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	6 cut(s)	82, 97, 107, 275, 694, 720
HspAI	GCGC	2 cut(s)	300, 775
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	5 cut(s)	414, 505, 555, 571, 666
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	100, 364
Lsp1109I	GCAGC	5 cut(s)	31, 235, 383, 439, 764
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	4 cut(s)	261, 447, 768, 778
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	5 cut(s)	416, 507, 557, 573, 668
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	5 cut(s)	414, 505, 555, 571, 666
MboII	GAAGA	2 cut(s)	74, 276
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	7, 491, 509
MlyI	GAGTC	2 cut(s)	152, 185
MmeI	TCCRAC	4 cut(s)	78, 144, 538, 628
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	2 cut(s)	482, 494
MslI	CAYNNNNRTG	1 cut(s)	715
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	139, 188, 394
MspR9I	CCNGG	4 cut(s)	149, 232, 245, 394
Mva1269I	GAATGC	2 cut(s)	140, 645
MvaI	CCWGG	3 cut(s)	149, 232, 245
MvnI	CGCG	2 cut(s)	300, 659
MwoI	GCNNNNNNNGC	9 cut(s)	135, 144, 223, 266, 275, 284, 323, 449, 752
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	5 cut(s)	414, 505, 555, 571, 666
NlaIII	CATG	6 cut(s)	82, 97, 107, 275, 694, 720
NlaIV	GGNNCC	3 cut(s)	200, 391, 663
NspI	RCATGY	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	407
PciI	ACATGT	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	259
PctI	GAATGC	2 cut(s)	140, 645
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	56, 409, 696
PkrI	GCNGC	9 cut(s)	46, 225, 316, 353, 373, 389, 454, 754, 757
PleI	GAGTC	2 cut(s)	152, 184
PmaCI	CACGTG	1 cut(s)	126
PmlI	CACGTG	1 cut(s)	126
PpsI	GAGTC	2 cut(s)	152, 184
Ppu21I	YACGTR	1 cut(s)	126
PscI	ACATGT	1 cut(s)	93
PshBI	ATTAAT	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	147, 230, 243
PspCI	CACGTG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	3 cut(s)	147, 230, 243
PspN4I	GGNNCC	3 cut(s)	200, 391, 663
PspPI	GGNCC	3 cut(s)	241, 650, 661
PsuI	RGATCY	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	715
SalI	GTCGAC	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	482, 494
SatI	GCNGC	9 cut(s)	45, 224, 315, 352, 372, 388, 453, 753, 756
Sau3AI	GATC	5 cut(s)	414, 505, 555, 571, 666
Sau96I	GGNCC	3 cut(s)	241, 650, 661
SchI	GAGTC	2 cut(s)	152, 185
ScrFI	CCNGG	4 cut(s)	149, 232, 245, 394
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	8 cut(s)	33, 128, 153, 294, 337, 422, 584, 682
SfaNI	GCATC	1 cut(s)	545
SfuI	TTCGAA	1 cut(s)	407
SgrDI	CGTCGACG	1 cut(s)	38
SinI	GGWCC	2 cut(s)	650, 661
SmiMI	CAYNNNNRTG	1 cut(s)	715
SmlI	CTYRAG	2 cut(s)	204, 470
SmoI	CTYRAG	2 cut(s)	204, 470
Sse9I	AATT	3 cut(s)	7, 491, 509
SsiI	CCGC	7 cut(s)	215, 314, 352, 374, 387, 659, 756
SspMI	CTAG	4 cut(s)	261, 447, 768, 778
StyD4I	CCNGG	4 cut(s)	147, 230, 243, 392
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	5 cut(s)	39, 153, 304, 337, 407
TasI	AATT	3 cut(s)	7, 491, 509
TauI	GCSGC	4 cut(s)	317, 354, 390, 758
TfiI	GAWTC	3 cut(s)	56, 409, 696
Tru1I	TTAA	2 cut(s)	482, 494
Tru9I	TTAA	2 cut(s)	482, 494
TscAI	CASTG	1 cut(s)	22
TseI	GCWGC	5 cut(s)	44, 223, 371, 452, 752
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	650, 661
VspI	ATTAAT	1 cut(s)	482
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 169
XmiI	GTMKAC	2 cut(s)	39, 282
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	4 cut(s)	261, 447, 768, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.