Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Forward (+)

25004573 .. 25005485

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G267400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAGAACACGAGCAAGGATCTGGAGAAATCTGAGGCCTCTGAGATCACTGGCCCTAGCAGCACAGAAACAACAACGAACGAAGTACTGGACTTGAACGAGGACCTAGAAGCAGGATTGGCGGAAACTGATGAAGAACATGTACAAGTAGAATGCAGAATTTGCCAGGAGGAAGATTTCATGGACAAACTGGAAGCTCCTTGCCTCTGCAACGGCACTCTCAAGTTTGCTCACAGGGATTGCATTCAAAGATGGATCAACGAGAGGCTAAGCATGATTTGTGAAATCTGCAAACAGCCATACCAGCCGGATTATACGATGGTCCTGCCTCCACCACAAGATGTTCAAGCCGAAGATGTCACCATTGGCATCAGGCAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

128

Amino Acids

14.39

Weight (kDa)

4.19

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	27, 263
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	2 cut(s)	87, 144
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	3 cut(s)	97, 248, 347
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AlwI	GGATC	2 cut(s)	27, 263
AoxI	GGCC	2 cut(s)	36, 52
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	53, 103, 322
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	103, 322
BarI	GAAGNNNNNNTAC	2 cut(s)	126, 158
BauI	CACGAG	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	246, 313
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	1 cut(s)	167
BfaI	CTAG	3 cut(s)	57, 107, 382
BisI	GCNGC	1 cut(s)	61
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	62
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	2 cut(s)	103, 322
BmgT120I	GGNCC	3 cut(s)	53, 103, 322
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	206
Bse1I	ACTGG	3 cut(s)	55, 93, 195
BseBI	CCWGG	1 cut(s)	167
BseMII	CTCAG	2 cut(s)	24, 33
BseNI	ACTGG	3 cut(s)	55, 93, 195
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	2 cut(s)	38, 54
BsiSI	CCGG	1 cut(s)	308
BsmI	GAATGC	2 cut(s)	158, 243
BsnI	GGCC	2 cut(s)	38, 54
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	19, 45, 255
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	38, 54
BspCNI	CTCAG	2 cut(s)	25, 34
BspPI	GGATC	2 cut(s)	27, 263
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	3 cut(s)	55, 93, 195
BssMI	GATC	3 cut(s)	19, 45, 255
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	33, 42, 269
BstKTI	GATC	3 cut(s)	22, 48, 258
BstMBI	GATC	3 cut(s)	19, 45, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 119, 162, 304
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	72
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	38, 54
BtsIMutI	CAGTG	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	53, 103, 322
Csp6I	GTAC	2 cut(s)	86, 143
CviAII	CATG	3 cut(s)	140, 181, 274
CviJI	RGCY	8 cut(s)	38, 54, 197, 268, 298, 307, 350, 381
CviKI_1	RGCY	8 cut(s)	38, 54, 197, 268, 298, 307, 350, 381
CviQI	GTAC	2 cut(s)	86, 143
DdeI	CTNAG	3 cut(s)	33, 42, 269
DpnI	GATC	3 cut(s)	21, 47, 257
DpnII	GATC	3 cut(s)	19, 45, 255
EciI	GGCGGA	1 cut(s)	137
Eco147I	AGGCCT	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	103, 322
EcoO109I	RGGNCCY	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	3 cut(s)	143, 184, 277
FaiI	YATR	5 cut(s)	141, 182, 275, 301, 315
FatI	CATG	3 cut(s)	139, 180, 273
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	3 cut(s)	57, 107, 382
GluI	GCNGC	1 cut(s)	61
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	38, 54
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	143, 184, 277
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	34, 43
Hpy188III	TCNNGA	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	156, 210, 243, 291
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 119, 162, 304
HpyF3I	CTNAG	3 cut(s)	33, 42, 269
Hsp92II	CATG	3 cut(s)	143, 184, 277
Kzo9I	GATC	3 cut(s)	19, 45, 255
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	57, 107, 382
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	21, 47, 257
MboI	GATC	3 cut(s)	19, 45, 255
MboII	GAAGA	3 cut(s)	146, 185, 365
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	7 cut(s)	28, 49, 94, 163, 215, 258, 339
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	158, 243
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	4 cut(s)	60, 119, 162, 304
NdeII	GATC	3 cut(s)	19, 45, 255
NlaIII	CATG	3 cut(s)	143, 184, 277
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	38
PciI	ACATGT	1 cut(s)	139
PctI	GAATGC	2 cut(s)	158, 243
PkrI	GCNGC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	103
PscI	ACATGT	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	3 cut(s)	53, 103, 322
PspPPI	RGGWCCY	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	87, 144
RsaNI	GTAC	2 cut(s)	86, 143
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	3 cut(s)	19, 45, 255
Sau96I	GGNCC	3 cut(s)	53, 103, 322
ScaI	AGTACT	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	167
SetI	ASST	2 cut(s)	108, 199
SfaNI	GCATC	1 cut(s)	378
SinI	GGWCC	2 cut(s)	103, 322
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	159
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	3 cut(s)	57, 107, 382
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	165
TasI	AATT	1 cut(s)	159
TatI	WGTACW	2 cut(s)	85, 142
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	147, 169
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	103, 322
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	3 cut(s)	57, 107, 382
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.