Rroxscaffold_2G00083030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003694
Physical Location & Seq
Reverse (-)
5739618 .. 5740864
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083030.1

Sequence Viewer

Length: 501 bp
ATGGATAGGAAAAACAAGAAAGAAGACCAAGAGGAAGGGGTTAATATTCTTGATGACTTAGCAGCTGGGATTAAGGGACCAGAAGAACCACCACCATCATCAAGTGCAGAATGTAAAATCTGCTGTCAGGCAGAGGAGTTCATAGACAAACTGGAATCCCTTGTCATTGCAGTGGTACTCTTAAGGTGGGTTTACCATAACAGTACCACCCCGCCTACTCCGGAGGAGTTGGAAGCTCAAATGGCACGAGAAGAAGCTGAGAGGGAGGCCGAAATAGCAAGGGAAGACGCTCGAAGAGCAACAGGGGCGGCATTAGCGGCTATATTGCCGGATTTGAATAACGCCGCTATTGGTGAAAGTCTTGTATGCCGGATTTCTTCTATCCTTTGCCTTGCGTTTCTGGCTCTAAAAGAGCACTGCCGTTCTGAATTAGGCCACAGGCCTGTCTCGGTTCTGTTCTGGGTCATCTTGTCGATCTCGAGTCCTTGGGCTGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.2

Weight (kDa)

4.75

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 4 cut(s) 212, 308, 317, 345
AfaI GTAC 2 cut(s) 177, 205
AfiI CCNNNNNNNGG 1 cut(s) 491
AflII CTTAAG 1 cut(s) 181
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 3 cut(s) 65, 236, 257
AluI AGCT 3 cut(s) 65, 236, 257
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 478
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 3 cut(s) 267, 433, 440
ApeKI GCWGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 30, 291
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 103
BceAI ACGGC 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 451
BfrI CTTAAG 1 cut(s) 181
BisI GCNGC 4 cut(s) 63, 309, 318, 345
BlsI GCNGC 4 cut(s) 64, 310, 319, 346
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 78
BpiI GAAGAC 2 cut(s) 30, 291
BsaJI CCNNGG 1 cut(s) 485
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 156
BseRI GAGGAG 2 cut(s) 149, 239
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 2 cut(s) 65, 491
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 3 cut(s) 269, 435, 442
BsiHKAI GWGCWC 1 cut(s) 417
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 3 cut(s) 221, 329, 370
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 3 cut(s) 269, 435, 442
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 417
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 1 cut(s) 474
BspACI CCGC 4 cut(s) 212, 308, 317, 345
BspANI GGCC 3 cut(s) 269, 435, 442
BspCNI CTCAG 1 cut(s) 250
BspEI TCCGGA 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 1 cut(s) 474
BssSI CACGAG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 289
BstAFI CTTAAG 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 58, 258
BstKTI GATC 1 cut(s) 477
BstMAI GTCTC 1 cut(s) 451
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 7 cut(s) 242, 275, 296, 305, 314, 317, 401
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 2 cut(s) 30, 291
BsuRI GGCC 3 cut(s) 269, 435, 442
BtsI GCAGTG 2 cut(s) 177, 415
BtsIMutI CAGTG 2 cut(s) 177, 415
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 176, 204
CviJI RGCY 9 cut(s) 65, 236, 257, 269, 320, 404, 435, 442, 491
CviKI_1 RGCY 9 cut(s) 65, 236, 257, 269, 320, 404, 435, 442, 491
CviQI GTAC 2 cut(s) 176, 204
DdeI CTNAG 2 cut(s) 58, 258
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 485
Eco147I AGGCCT 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaiI YATR 4 cut(s) 143, 198, 323, 367
FaqI GGGAC 1 cut(s) 90
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 63, 309, 318, 345
Fsp4HI GCNGC 4 cut(s) 63, 309, 318, 345
GluI GCNGC 4 cut(s) 63, 309, 318, 345
GsaI CCCAGC 2 cut(s) 69, 495
HaeIII GGCC 3 cut(s) 269, 435, 442
HapII CCGG 3 cut(s) 221, 329, 370
HgaI GACGC 1 cut(s) 296
HinfI GANTC 2 cut(s) 155, 481
HpaII CCGG 3 cut(s) 221, 329, 370
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 3 cut(s) 50, 221, 478
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 107, 170
HpyF10VI GCNNNNNNNGC 7 cut(s) 242, 275, 296, 305, 314, 317, 401
HpyF3I CTNAG 2 cut(s) 58, 258
Kpn2I TCCGGA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 474
LguI GCTCTTC 1 cut(s) 289
Lsp1109I GCAGC 1 cut(s) 74
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 6 cut(s) 35, 95, 263, 296, 306, 369
MhlI GDGCHC 1 cut(s) 417
MluCI AATT 1 cut(s) 428
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 25, 127, 217, 255, 259
MroI TCCGGA 1 cut(s) 220
MseI TTAA 3 cut(s) 42, 72, 182
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 181
MspI CCGG 3 cut(s) 221, 329, 370
MwoI GCNNNNNNNGC 7 cut(s) 242, 275, 296, 305, 314, 317, 401
NdeII GATC 1 cut(s) 474
NlaIV GGNNCC 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 478
PceI AGGCCT 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 4 cut(s) 64, 310, 319, 346
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
PspFI CCCAGC 2 cut(s) 65, 491
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 177, 205
RsaNI GTAC 2 cut(s) 176, 204
RseI CAYNNNNRTG 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 42, 72, 182
SatI GCNGC 4 cut(s) 63, 309, 318, 345
Sau3AI GATC 1 cut(s) 474
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 490
SduI GDGCHC 1 cut(s) 417
SetI ASST 4 cut(s) 67, 188, 238, 259
Sfr274I CTCGAG 1 cut(s) 478
SinI GGWCC 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 478
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 181, 478
SmoI CTYRAG 2 cut(s) 181, 478
Sse9I AATT 1 cut(s) 428
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 4 cut(s) 212, 308, 317, 345
SspI AATATT 1 cut(s) 46
StuI AGGCCT 1 cut(s) 442
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 292, 473, 479
TasI AATT 1 cut(s) 428
TauI GCSGC 3 cut(s) 311, 320, 347
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 42, 72, 182
Tru9I TTAA 3 cut(s) 42, 72, 182
TscAI CASTG 2 cut(s) 177, 422
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 2 cut(s) 177, 422
Vha464I CTTAAG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.