Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

19612892 .. 19613838

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGAATTACAGGCTTTCTTGCAGTGATAAATCAGAGGTCTCCGTCGACTTTGCTGAAGTAGATTCAGAAGAAATGACAGACGACATGGAAATCAAGCTCATGTTGGAGGAGTCACTCATCTCCAGCTCTTGCACTGAATGCCGGATATGCCAGGTCGAGGACTCCGTTAACGAAATGGAGGCTCCTTGCCGGTGCAACGGCACCCTCACGTTTGCCCACCGAGATTGTATCCAGCAATGGATCAACTTGAGTTACAAGGCCACTTGCGAAATTTGTAAGCAGCCGTATGAGGGTGGCTACAGAATACCGGTACCGCCGCCAACACCACCACCACGGCAGCCTACCAGGAGGGAGGCCCTGGACGCTATAAGGGCTAGAAGGGCTCATGTGGTAGTAGACGCAGAGGTATATCAGGCTAGACTAAATGCGGCTAATAGTTCCATTTTAGGTCGAAGTCTTGGATGCCGCATTGCTCCAGTCCTTCTATCGATTTTCTTTTGTGTTCTTGTAGGTTTTTTGTTTGTACATCATCGTCATAATAATAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

185

Amino Acids

20.83

Weight (kDa)

5.39

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	48 - 93	1.5e-13	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	2 cut(s)	203, 313
AccI	GTMKAC	2 cut(s)	48, 399
AciI	CCGC	4 cut(s)	317, 320, 431, 469
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	315, 528
AfiI	CCNNNNNNNGG	2 cut(s)	160, 293
AgeI	ACCGGT	1 cut(s)	310
AjnI	CCWGG	3 cut(s)	153, 347, 360
AluBI	AGCT	2 cut(s)	100, 129
AluI	AGCT	2 cut(s)	100, 129
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	261, 357
ApeKI	GCWGC	2 cut(s)	283, 340
ApoI	RAATTY	1 cut(s)	273
AsiGI	ACCGGT	1 cut(s)	310
Asp718I	GGTACC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	203, 313
BanII	GRGCYC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	295, 352
BceAI	ACGGC	3 cut(s)	217, 271, 353
BciT130I	CCWGG	3 cut(s)	155, 349, 362
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	378, 420
BfmI	CTRYAG	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	284, 320, 341, 432, 469
BlsI	GCNGC	5 cut(s)	285, 321, 342, 433, 470
Bme1390I	CCNGG	3 cut(s)	155, 349, 362
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	3 cut(s)	186, 205, 315
BmrFI	CCNGG	3 cut(s)	155, 349, 362
BmsI	GCATC	1 cut(s)	455
BpmI	CTGGAG	2 cut(s)	109, 462
BpuEI	CTTGAG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	335, 360
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 293
Bse118I	RCCGGY	2 cut(s)	192, 310
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	2 cut(s)	245, 471
BseBI	CCWGG	3 cut(s)	155, 349, 362
BseCI	ATCGAT	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	335, 360
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	2 cut(s)	160, 293
BseMI	GCAATG	2 cut(s)	245, 471
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	295, 352
BshFI	GGCC	2 cut(s)	263, 359
BshNI	GGYRCC	2 cut(s)	203, 313
BshTI	ACCGGT	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	145, 193, 311
BslI	CCNNNNNNNGG	2 cut(s)	160, 293
BsmAI	GTCTC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	263, 359
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	4 cut(s)	317, 320, 431, 469
BspANI	GGCC	2 cut(s)	263, 359
BspDI	ATCGAT	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	186, 205, 315
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	2 cut(s)	203, 313
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	245, 471
BsrFI	RCCGGY	2 cut(s)	192, 310
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	479
BssAI	RCCGGY	2 cut(s)	192, 310
BssECI	CCNNGG	2 cut(s)	335, 360
BssMI	GATC	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	155, 349, 362
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstAUI	TGTACA	1 cut(s)	526
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 150, 365, 374, 383
BstNI	CCWGG	3 cut(s)	155, 349, 362
BstSCI	CCNGG	3 cut(s)	153, 347, 360
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	295, 352
Bsu15I	ATCGAT	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	263, 359
BsuTUI	ATCGAT	1 cut(s)	491
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	470
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 135
Cfr10I	RCCGGY	2 cut(s)	192, 310
Cfr13I	GGNCC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	491
CseI	GACGC	2 cut(s)	374, 410
Csp6I	GTAC	2 cut(s)	314, 527
CspAI	ACCGGT	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	3 cut(s)	88, 103, 389
CviQI	GTAC	2 cut(s)	314, 527
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	153, 347, 360
EcoT38I	GRGCYC	1 cut(s)	388
FaeI	CATG	3 cut(s)	91, 106, 392
FaiI	YATR	8 cut(s)	89, 104, 151, 291, 371, 390, 412, 540
FatI	CATG	3 cut(s)	87, 102, 388
FblI	GTMKAC	2 cut(s)	48, 399
Fnu4HI	GCNGC	5 cut(s)	284, 320, 341, 432, 469
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	1 cut(s)	388
Fsp4HI	GCNGC	5 cut(s)	284, 320, 341, 432, 469
FspBI	CTAG	2 cut(s)	378, 420
GluI	GCNGC	5 cut(s)	284, 320, 341, 432, 469
GsuI	CTGGAG	2 cut(s)	109, 462
HaeIII	GGCC	2 cut(s)	263, 359
HapII	CCGG	3 cut(s)	145, 193, 311
HgaI	GACGC	2 cut(s)	374, 410
Hin1II	CATG	3 cut(s)	91, 106, 392
HincII	GTYRAC	2 cut(s)	49, 172
HindII	GTYRAC	2 cut(s)	49, 172
HinfI	GANTC	3 cut(s)	65, 113, 164
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	3 cut(s)	145, 193, 311
Hpy166II	GTNNAC	3 cut(s)	49, 172, 400
Hpy188I	TCNGA	2 cut(s)	37, 70
Hpy8I	GTNNAC	3 cut(s)	49, 172, 400
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	2 cut(s)	375, 494
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	24, 135, 198
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 150, 365, 374, 383
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	91, 106, 392
KpnI	GGTACC	1 cut(s)	317
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	190, 481
Lsp1109I	GCAGC	2 cut(s)	295, 352
LweI	GCATC	1 cut(s)	455
MaeI	CTAG	2 cut(s)	378, 420
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	114, 254
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	2 cut(s)	7, 273
MlyI	GAGTC	2 cut(s)	122, 158
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	31, 103, 154, 175, 218, 286, 345, 349, 400
MseI	TTAA	1 cut(s)	171
MspI	CCGG	3 cut(s)	145, 193, 311
MspR9I	CCNGG	3 cut(s)	155, 349, 362
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	3 cut(s)	155, 349, 362
MwoI	GCNNNNNNNGC	5 cut(s)	141, 150, 365, 374, 383
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	3 cut(s)	91, 106, 392
NlaIV	GGNNCC	3 cut(s)	186, 205, 315
NmuCI	GTSAC	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	285, 321, 342, 433, 470
PleI	GAGTC	2 cut(s)	121, 158
PpsI	GAGTC	2 cut(s)	121, 158
Psp6I	CCWGG	3 cut(s)	153, 347, 360
PspGI	CCWGG	3 cut(s)	153, 347, 360
PspN4I	GGNNCC	3 cut(s)	186, 205, 315
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	315, 528
RsaNI	GTAC	2 cut(s)	314, 527
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	5 cut(s)	284, 320, 341, 432, 469
Sau3AI	GATC	1 cut(s)	243
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	122, 158
ScrFI	CCNGG	3 cut(s)	155, 349, 362
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	8 cut(s)	42, 102, 131, 159, 215, 411, 454, 517
SfaNI	GCATC	1 cut(s)	455
SfcI	CTRYAG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	7, 273
SsiI	CCGC	4 cut(s)	317, 320, 431, 469
SspMI	CTAG	2 cut(s)	378, 420
StyD4I	CCNGG	3 cut(s)	153, 347, 360
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	4 cut(s)	48, 159, 454, 491
TasI	AATT	2 cut(s)	7, 273
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	3 cut(s)	322, 434, 471
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	31, 142
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	2 cut(s)	283, 340
Tsp45I	GTSAC	1 cut(s)	114
TspGWI	ACGGA	2 cut(s)	34, 157
TspRI	CASTG	2 cut(s)	31, 142
XapI	RAATTY	1 cut(s)	273
XmiI	GTMKAC	2 cut(s)	48, 399
XspI	CTAG	2 cut(s)	378, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.