Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Forward (+)

25371489 .. 25372925

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTGACGTATGTTGCAGAAACCTCCATTACTACGCGTCGTTCTTCCCCTCTGCGGCTCTGCCCTTTGCCGAATGGCCTCCAGATCATCAGTTTGCGCATTGCTCGAAGCCAATCAGGCTCGGACTCAGCTCCGGTCTCTCCGAGGCTAAGCCTACGCCTGCCTACCACTGTCACGAAGAGCCTAATAAATGTGACAGAGGAGCTGCTAGCTCAACCACTTCACGCTAAAAATACGTACCGTCTCTTCACTGATAAATCGGAGGTCTGCGTCGACACTGCCGAAGTAGATTCAGAAGAAATGACAGAGGACATGGAAACCAAGCACATGTTGGAGCAGGACCCATCTTTCTCCAACTCGTGCATTGAATGCCGGATATGCCAGGTCGAGGACTCCATTGATGAACTGGAGTCTCCTTGCCGGTGCAACGGCACCCTCAAGTTTGCTCACCGAGATTGTATCCAGCAATGGATCAACTTGAGTTACAAGACCACTTGCGAAATTTGTAACCAGCCGTATGAGGGTGGTTATACAATACCGGTACCGCCCCCAGCACCACCGCCACGGCAGCCTACCAGGAGGGAGGCCCTGGACACTATAAGGGCTAGAAGAGCGTATGTGGCAGTAGACGCAGAGGTATATCGCGCTCGACTAAATGCGGCAAATAGTGCCATTTTAGGTCGAAGTTTTGTGTGCCGCATTGCTCCTGTCATTGTTATCTGTTTATACATCATCGTCATAATGAGTAGCATAGGCAGCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

255

Amino Acids

28.25

Weight (kDa)

5.99

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	124 - 169	1.7e-14	RING-variant domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	98
Acc65I	GGTACC	1 cut(s)	541
AccB1I	GGYRCC	2 cut(s)	431, 541
AccI	GTMKAC	2 cut(s)	273, 627
AccII	CGCG	2 cut(s)	37, 645
AciI	CCGC	6 cut(s)	55, 545, 560, 659, 697, 759
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	501
AfaI	GTAC	2 cut(s)	239, 543
AfiI	CCNNNNNNNGG	3 cut(s)	54, 388, 521
AflIII	ACRYGT	2 cut(s)	35, 327
AgeI	ACCGGT	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	3 cut(s)	381, 575, 588
AluBI	AGCT	3 cut(s)	131, 205, 212
AluI	AGCT	3 cut(s)	131, 205, 212
Alw26I	GTCTC	3 cut(s)	142, 248, 417
AlwI	GGATC	1 cut(s)	479
AoxI	GGCC	2 cut(s)	76, 585
ApeKI	GCWGC	3 cut(s)	205, 568, 756
ApoI	RAATTY	1 cut(s)	501
AsiGI	ACCGGT	1 cut(s)	538
Asp718I	GGTACC	1 cut(s)	541
AspLEI	GCGC	2 cut(s)	99, 647
AspS9I	GGNCC	2 cut(s)	340, 586
AsuHPI	GGTGA	2 cut(s)	16, 440
AsuNHI	GCTAGC	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	2 cut(s)	431, 541
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BauI	CACGAG	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	192, 580
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	3 cut(s)	445, 499, 581
BciT130I	CCWGG	3 cut(s)	383, 577, 590
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	142, 248, 417
BfaI	CTAG	2 cut(s)	209, 606
BfuI	GTATCC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	6 cut(s)	56, 206, 569, 660, 697, 757
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	6 cut(s)	57, 207, 570, 661, 698, 758
Bme1390I	CCNGG	3 cut(s)	383, 577, 590
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	2 cut(s)	340, 586
BmiI	GGNNCC	3 cut(s)	342, 433, 543
BmrFI	CCNGG	3 cut(s)	383, 577, 590
BmtI	GCTAGC	1 cut(s)	212
BpmI	CTGGAG	2 cut(s)	65, 428
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	422, 499
BsaAI	YACGTR	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	143, 563, 588
BsaWI	WCCGGW	2 cut(s)	133, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 388, 521
Bse118I	RCCGGY	2 cut(s)	420, 538
Bse1I	ACTGG	1 cut(s)	411
Bse3DI	GCAATG	3 cut(s)	99, 473, 699
BseBI	CCWGG	3 cut(s)	383, 577, 590
BseDI	CCNNGG	3 cut(s)	143, 563, 588
BseLI	CCNNNNNNNGG	3 cut(s)	54, 388, 521
BseMI	GCAATG	3 cut(s)	99, 473, 699
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	192, 580
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	2 cut(s)	37, 645
BshFI	GGCC	2 cut(s)	78, 587
BshNI	GGYRCC	2 cut(s)	431, 541
BshTI	ACCGGT	1 cut(s)	538
BsiSI	CCGG	4 cut(s)	134, 373, 421, 539
BslI	CCNNNNNNNGG	3 cut(s)	54, 388, 521
BsmAI	GTCTC	3 cut(s)	142, 248, 417
BsmBI	CGTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	2 cut(s)	78, 587
Bso31I	GGTCTC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	84, 471
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	6 cut(s)	55, 545, 560, 659, 697, 759
BspANI	GGCC	2 cut(s)	78, 587
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	37, 645
BspLI	GGNNCC	3 cut(s)	342, 433, 543
BspOI	GCTAGC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	479
BspQI	GCTCTTC	2 cut(s)	173, 604
BspT107I	GGYRCC	2 cut(s)	431, 541
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	3 cut(s)	99, 473, 699
BsrFI	RCCGGY	2 cut(s)	420, 538
BsrI	ACTGG	1 cut(s)	411
BssAI	RCCGGY	2 cut(s)	420, 538
BssECI	CCNNGG	3 cut(s)	143, 563, 588
BssMI	GATC	2 cut(s)	84, 471
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst2UI	CCWGG	3 cut(s)	383, 577, 590
Bst4CI	ACNGT	2 cut(s)	172, 242
Bst6I	CTCTTC	3 cut(s)	173, 251, 604
BstAPI	GCANNNNNTGC	2 cut(s)	369, 668
BstBAI	YACGTR	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	161, 210
BstDEI	CTNAG	2 cut(s)	127, 149
BstDSI	CCRYGG	1 cut(s)	563
BstFNI	CGCG	2 cut(s)	37, 645
BstHHI	GCGC	2 cut(s)	99, 647
BstKTI	GATC	2 cut(s)	87, 474
BstMAI	GTCTC	3 cut(s)	142, 248, 417
BstMBI	GATC	2 cut(s)	84, 471
BstMWI	GCNNNNNNNGC	9 cut(s)	117, 369, 378, 568, 611, 620, 629, 668, 756
BstNI	CCWGG	3 cut(s)	383, 577, 590
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	3 cut(s)	381, 575, 588
BstSNI	TACGTA	1 cut(s)	237
BstUI	CGCG	2 cut(s)	37, 645
BstV1I	GCAGC	2 cut(s)	192, 580
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	78, 587
BtgI	CCRYGG	1 cut(s)	563
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	168, 249, 276
Cac8I	GCNNGC	2 cut(s)	161, 210
CfoI	GCGC	2 cut(s)	99, 647
Cfr10I	RCCGGY	2 cut(s)	420, 538
Cfr13I	GGNCC	2 cut(s)	340, 586
CseI	GACGC	3 cut(s)	26, 259, 638
Csp6I	GTAC	2 cut(s)	238, 542
CspAI	ACCGGT	1 cut(s)	538
CviAII	CATG	2 cut(s)	313, 328
CviQI	GTAC	2 cut(s)	238, 542
DdeI	CTNAG	2 cut(s)	127, 149
DpnI	GATC	2 cut(s)	86, 473
DpnII	GATC	2 cut(s)	84, 471
Eam1104I	CTCTTC	3 cut(s)	173, 251, 604
EarI	CTCTTC	3 cut(s)	173, 251, 604
Eco105I	TACGTA	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	340
EcoO109I	RGGNCCY	2 cut(s)	340, 586
EcoRII	CCWGG	3 cut(s)	381, 575, 588
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	2 cut(s)	316, 331
FatI	CATG	2 cut(s)	312, 327
FauI	CCCGC	1 cut(s)	752
FblI	GTMKAC	2 cut(s)	273, 627
Fnu4HI	GCNGC	6 cut(s)	56, 206, 569, 660, 697, 757
Fsp4HI	GCNGC	6 cut(s)	56, 206, 569, 660, 697, 757
FspBI	CTAG	2 cut(s)	209, 606
FspI	TGCGCA	1 cut(s)	98
GlaI	GCGC	2 cut(s)	98, 646
GluI	GCNGC	6 cut(s)	56, 206, 569, 660, 697, 757
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	65, 428
HaeIII	GGCC	2 cut(s)	78, 587
HapII	CCGG	4 cut(s)	134, 373, 421, 539
HgaI	GACGC	3 cut(s)	26, 259, 638
HhaI	GCGC	2 cut(s)	99, 647
Hin1II	CATG	2 cut(s)	316, 331
Hin6I	GCGC	2 cut(s)	97, 645
HinP1I	GCGC	2 cut(s)	97, 645
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	4 cut(s)	125, 290, 392, 410
HpaII	CCGG	4 cut(s)	134, 373, 421, 539
HphI	GGTGA	2 cut(s)	16, 440
Hpy166II	GTNNAC	2 cut(s)	274, 628
Hpy188I	TCNGA	4 cut(s)	124, 144, 262, 295
Hpy188III	TCNNGA	2 cut(s)	82, 175
Hpy8I	GTNNAC	2 cut(s)	274, 628
Hpy99I	CGWCG	2 cut(s)	42, 275
HpyCH4III	ACNGT	2 cut(s)	172, 242
HpyCH4IV	ACGT	2 cut(s)	8, 236
HpyCH4V	TGCA	3 cut(s)	17, 363, 426
HpyF10VI	GCNNNNNNNGC	9 cut(s)	117, 369, 378, 568, 611, 620, 629, 668, 756
HpyF3I	CTNAG	2 cut(s)	127, 149
HpySE526I	ACGT	2 cut(s)	8, 236
Hsp92II	CATG	2 cut(s)	316, 331
HspAI	GCGC	2 cut(s)	97, 645
KpnI	GGTACC	1 cut(s)	545
Kzo9I	GATC	2 cut(s)	84, 471
LguI	GCTCTTC	2 cut(s)	173, 604
LmnI	GCTCC	4 cut(s)	136, 202, 334, 709
Lsp1109I	GCAGC	2 cut(s)	192, 580
MaeI	CTAG	2 cut(s)	209, 606
MaeII	ACGT	2 cut(s)	8, 236
MaeIII	GTNAC	5 cut(s)	4, 172, 193, 482, 506
MalI	GATC	2 cut(s)	86, 473
MboI	GATC	2 cut(s)	84, 471
MboII	GAAGA	5 cut(s)	36, 190, 238, 308, 621
MluCI	AATT	1 cut(s)	501
MluI	ACGCGT	1 cut(s)	35
MlyI	GAGTC	3 cut(s)	119, 386, 419
MmeI	TCCRAC	2 cut(s)	312, 378
MspA1I	CMGCKG	1 cut(s)	759
MspI	CCGG	4 cut(s)	134, 373, 421, 539
MspR9I	CCNGG	3 cut(s)	383, 577, 590
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	3 cut(s)	383, 577, 590
MvnI	CGCG	2 cut(s)	37, 645
MwoI	GCNNNNNNNGC	9 cut(s)	117, 369, 378, 568, 611, 620, 629, 668, 756
NdeII	GATC	2 cut(s)	84, 471
NheI	GCTAGC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	316, 331
NlaIV	GGNNCC	3 cut(s)	342, 433, 543
NmuCI	GTSAC	3 cut(s)	4, 172, 193
NsbI	TGCGCA	1 cut(s)	98
NspI	RCATGY	1 cut(s)	331
PciI	ACATGT	1 cut(s)	327
PciSI	GCTCTTC	2 cut(s)	173, 604
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	538
PkrI	GCNGC	6 cut(s)	57, 207, 570, 661, 698, 758
PleI	GAGTC	3 cut(s)	119, 386, 418
PpsI	GAGTC	3 cut(s)	119, 386, 418
Ppu21I	YACGTR	1 cut(s)	237
PpuMI	RGGWCCY	1 cut(s)	340
PscI	ACATGT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	340
Psp6I	CCWGG	3 cut(s)	381, 575, 588
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	381, 575, 588
PspN4I	GGNNCC	3 cut(s)	342, 433, 543
PspPI	GGNCC	2 cut(s)	340, 586
PspPPI	RGGWCCY	1 cut(s)	340
RsaI	GTAC	2 cut(s)	239, 543
RsaNI	GTAC	2 cut(s)	238, 542
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	2 cut(s)	173, 604
SatI	GCNGC	6 cut(s)	56, 206, 569, 660, 697, 757
Sau3AI	GATC	2 cut(s)	84, 471
Sau96I	GGNCC	2 cut(s)	340, 586
SchI	GAGTC	3 cut(s)	119, 386, 419
ScrFI	CCNGG	3 cut(s)	383, 577, 590
SinI	GGWCC	1 cut(s)	340
SmlI	CTYRAG	2 cut(s)	437, 478
SmoI	CTYRAG	2 cut(s)	437, 478
SnaBI	TACGTA	1 cut(s)	237
Sse9I	AATT	1 cut(s)	501
SsiI	CCGC	6 cut(s)	55, 545, 560, 659, 697, 759
SspMI	CTAG	2 cut(s)	209, 606
StyD4I	CCNGG	3 cut(s)	381, 575, 588
TaaI	ACNGT	2 cut(s)	172, 242
TaiI	ACGT	2 cut(s)	11, 239
TaqI	TCGA	5 cut(s)	106, 273, 387, 649, 682
TasI	AATT	1 cut(s)	501
TauI	GCSGC	3 cut(s)	58, 662, 699
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	3 cut(s)	175, 256, 283
TseFI	GTSAC	3 cut(s)	4, 172, 193
TseI	GCWGC	3 cut(s)	205, 568, 756
Tsp45I	GTSAC	3 cut(s)	4, 172, 193
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	175, 256, 283
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	501
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	2 cut(s)	328, 403
XmiI	GTMKAC	2 cut(s)	273, 627
XspI	CTAG	2 cut(s)	209, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.