Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Forward (+)

85611663 .. 85614160

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG626900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCGGAAAAACAAGAAAGAAGACCAAGAGGAAGGGGTTAATATTCTTGATGACTTAGCAGCTGGGATTAAGGGACCAGTAGAACCACCACCATCATCAAGTGCAGAATTACCACCCCCGCCTACTCCGGAGGAGTTGGAAGCTCAAATGGCACGAGAAGAGGCAGAGAGGGAGACCGAAATAGCAAGGGAAGACGCTCGAAGAGCAACAGGGGCGGCATTAGCGGCTATATTGCCGGATTTGAATAACGCCGCTATTGGTGAAAGTCTTGTACGCCGGATTTCTTCTATCCTTCGTGCTGCTATGTACATTATTTTCATGGTCACTCTTATAACTGGCCTCCTTGACTTTCGACCATCTTCACCTTCACCCCAGCCCCCAGCTCCGGATCCATTACCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.56

Weight (kDa)

4.52

Isoelectric Point (pI)

82.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccIII	TCCGGA	2 cut(s)	130, 388
AciI	CCGC	4 cut(s)	122, 218, 227, 255
AclWI	GGATC	3 cut(s)	12, 386, 399
AfaI	GTAC	2 cut(s)	276, 311
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	3 cut(s)	65, 146, 386
AluI	AGCT	3 cut(s)	65, 146, 386
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	12, 386, 399
Aor13HI	TCCGGA	2 cut(s)	130, 388
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	62, 302
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	275, 357, 363
AvaII	GGWCC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	30, 201
BbvI	GCAGC	2 cut(s)	74, 289
BccI	CCATC	2 cut(s)	103, 367
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	5 cut(s)	63, 219, 228, 255, 303
BlsI	GCNGC	5 cut(s)	64, 220, 229, 256, 304
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	78, 393
BpiI	GAAGAC	2 cut(s)	30, 201
BsaI	GGTCTC	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	130, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	2 cut(s)	80, 343
BseAI	TCCGGA	2 cut(s)	130, 388
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseNI	ACTGG	2 cut(s)	80, 343
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	74, 289
BseYI	CCCAGC	3 cut(s)	65, 375, 382
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	131, 239, 280, 389
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	170
Bsp13I	TCCGGA	2 cut(s)	130, 388
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	4, 391
BspACI	CCGC	4 cut(s)	122, 218, 227, 255
BspANI	GGCC	1 cut(s)	342
BspEI	TCCGGA	2 cut(s)	130, 388
BspLI	GGNNCC	2 cut(s)	78, 393
BspPI	GGATC	3 cut(s)	12, 386, 399
BspQI	GCTCTTC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	80, 343
BssMI	GATC	2 cut(s)	4, 391
BssSI	CACGAG	1 cut(s)	156
Bst2BI	CACGAG	1 cut(s)	156
Bst6I	CTCTTC	2 cut(s)	156, 199
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	7, 394
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	4, 391
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 206, 215, 224, 227
BstV1I	GCAGC	2 cut(s)	74, 289
BstV2I	GAAGAC	2 cut(s)	30, 201
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	275, 310
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	65, 146, 230, 342, 379, 386
CviKI_1	RGCY	6 cut(s)	65, 146, 230, 342, 379, 386
CviQI	GTAC	2 cut(s)	275, 310
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	2 cut(s)	6, 393
DpnII	GATC	2 cut(s)	4, 391
Eam1104I	CTCTTC	2 cut(s)	156, 199
EarI	CTCTTC	2 cut(s)	156, 199
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	77
FaeI	CATG	1 cut(s)	325
FaiI	YATR	4 cut(s)	233, 308, 323, 335
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	1 cut(s)	321
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	5 cut(s)	63, 219, 228, 255, 303
Fsp4HI	GCNGC	5 cut(s)	63, 219, 228, 255, 303
GluI	GCNGC	5 cut(s)	63, 219, 228, 255, 303
GsaI	CCCAGC	3 cut(s)	69, 379, 386
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	4 cut(s)	131, 239, 280, 389
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	325
HpaII	CCGG	4 cut(s)	131, 239, 280, 389
HphI	GGTGA	3 cut(s)	275, 357, 363
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	3 cut(s)	50, 131, 389
HpyAV	CCTTC	3 cut(s)	29, 305, 378
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 206, 215, 224, 227
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	325
Kpn2I	TCCGGA	2 cut(s)	130, 388
Kzo9I	GATC	2 cut(s)	4, 391
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	2 cut(s)	74, 289
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	2 cut(s)	6, 393
MboI	GATC	2 cut(s)	4, 391
MboII	GAAGA	6 cut(s)	35, 173, 206, 216, 279, 354
MflI	RGATCY	1 cut(s)	391
MluCI	AATT	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	5 cut(s)	25, 127, 157, 165, 353
MroI	TCCGGA	2 cut(s)	130, 388
MseI	TTAA	2 cut(s)	42, 72
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	4 cut(s)	131, 239, 280, 389
MwoI	GCNNNNNNNGC	5 cut(s)	152, 206, 215, 224, 227
NdeII	GATC	2 cut(s)	4, 391
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	78, 393
NmuCI	GTSAC	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	199
PkrI	GCNGC	5 cut(s)	64, 220, 229, 256, 304
PsiI	TTATAA	1 cut(s)	335
PspFI	CCCAGC	3 cut(s)	65, 375, 382
PspN4I	GGNNCC	2 cut(s)	78, 393
PspPI	GGNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	2 cut(s)	276, 311
RsaNI	GTAC	2 cut(s)	275, 310
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	42, 72
SatI	GCNGC	5 cut(s)	63, 219, 228, 255, 303
Sau3AI	GATC	2 cut(s)	4, 391
Sau96I	GGNCC	1 cut(s)	77
SetI	ASST	5 cut(s)	67, 148, 370, 388, 403
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	4 cut(s)	122, 218, 227, 255
SspI	AATATT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	202, 355
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	1 cut(s)	110
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	3 cut(s)	221, 230, 257
Tru1I	TTAA	2 cut(s)	42, 72
Tru9I	TTAA	2 cut(s)	42, 72
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	62, 302
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.