Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Reverse (-)

78068052 .. 78070730

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021771

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAAGTTCAGGCAGTGAAAGCTTGGAGGCGTCAGTCTCCACCGTCGCGGAATCAGTCAGAAAGGAAGCTGGCAACATGCCAGAGGACAACCGATCTTCTTCCGCCTCCTTGACGACTGTTTTGAGCCCCGAATGCCGAATCTGTCAGACGGAGGACTCCATCGACCACATGGAGGCTCCTTGCCGGTGCAATGGCACCCTAAAGCGATGGGTCAATTCTCGTTTCAAGACTACTTGTGAGATCTGTAACCAGCCGTATGAGGGTGGTTATAGAGTAACGGTGACACCACCTGCAATGCCGCCGCAGCCTACGAGGACAGAGATTGAGGAGATTAGGACGGTGATGGAGGAGGCTGAAAGGTTGCATGCAGCGGCAGCAAGAGCAGAGTTATACCTCGCTCGACTTAATGCGGCAAACAATACCGTTTTAAGTCGAAGTGCTCTTTGCGCATTGCTATCCTCCGGTTTTTACATTCTGATCATAGCGAGTAACGTAGGCGGCGGCCTTCAGATTCGGATTGGACAGTCTTCACCGTCGGCTTCACCGTCACCGTCACCTCGGCCTCAATTATCTCCTCAATTCACCAGGGATAATAATAGTCCAGGGAGGGATTTCGAGTCGGAGGCTGATCCGGCCCCGTCAGAATCGCAGTGGCATTGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

223

Amino Acids

24.05

Weight (kDa)

5.1

Isoelectric Point (pI)

79.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc16I	TGCGCA	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	50
AciI	CCGC	8 cut(s)	50, 105, 302, 305, 374, 413, 501, 504
AclWI	GGATC	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	175, 263
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	587, 604
AluBI	AGCT	2 cut(s)	24, 71
AluI	AGCT	2 cut(s)	24, 71
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	3 cut(s)	505, 563, 636
ApeKI	GCWGC	3 cut(s)	307, 371, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	7 cut(s)	295, 355, 525, 537, 543, 549, 577
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	3 cut(s)	319, 383, 389
BccI	CCATC	3 cut(s)	170, 204, 340
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	589, 606
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	9 cut(s)	302, 305, 308, 372, 375, 378, 414, 502, 505
BlsI	GCNGC	9 cut(s)	303, 306, 309, 373, 376, 379, 415, 503, 506
Bme1390I	CCNGG	2 cut(s)	589, 606
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	3 cut(s)	180, 199, 639
BmrFI	CCNGG	2 cut(s)	589, 606
BpiI	GAAGAC	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	560, 588, 605
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 263
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	4 cut(s)	199, 303, 452, 658
BseBI	CCWGG	2 cut(s)	589, 606
BseDI	CCNNGG	3 cut(s)	560, 588, 605
BseLI	CCNNNNNNNGG	2 cut(s)	175, 263
BseMI	GCAATG	4 cut(s)	199, 303, 452, 658
BseRI	GAGGAG	3 cut(s)	344, 365, 567
BseXI	GCAGC	3 cut(s)	319, 383, 389
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	507, 565, 638
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	445
BsiSI	CCGG	3 cut(s)	187, 465, 635
BslI	CCNNNNNNNGG	2 cut(s)	175, 263
BsmAI	GTCTC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	3 cut(s)	507, 565, 638
Bsp1286I	GDGCHC	2 cut(s)	131, 445
Bsp143I	GATC	4 cut(s)	95, 243, 480, 631
BspACI	CCGC	8 cut(s)	50, 105, 302, 305, 374, 413, 501, 504
BspANI	GGCC	3 cut(s)	507, 565, 638
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	180, 199, 639
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	4 cut(s)	199, 303, 452, 658
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	560, 588, 605
BssMI	GATC	4 cut(s)	95, 243, 480, 631
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	589, 606
Bst4CI	ACNGT	9 cut(s)	46, 121, 283, 343, 427, 528, 537, 549, 555
BstACI	GRCGYC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	73, 369
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	98, 246, 483, 634
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	4 cut(s)	95, 243, 480, 631
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 135, 307, 377, 383, 449, 635
BstNI	CCWGG	2 cut(s)	589, 606
BstNSI	RCATGY	2 cut(s)	82, 371
BstSCI	CCNGG	2 cut(s)	587, 604
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	319, 383, 389
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	507, 565, 638
BtgZI	GCGATG	1 cut(s)	223
BtsI	GCAGTG	2 cut(s)	22, 659
BtsIMutI	CAGTG	2 cut(s)	22, 659
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	73, 369
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	637
CseI	GACGC	1 cut(s)	21
CviAII	CATG	3 cut(s)	79, 172, 368
DpnI	GATC	4 cut(s)	97, 245, 482, 633
DpnII	GATC	4 cut(s)	95, 243, 480, 631
EciI	GGCGGA	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	587, 604
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	3 cut(s)	82, 175, 371
FaiI	YATR	7 cut(s)	80, 173, 261, 273, 369, 394, 485
FatI	CATG	3 cut(s)	78, 171, 367
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	9 cut(s)	302, 305, 308, 372, 375, 378, 414, 502, 505
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	9 cut(s)	302, 305, 308, 372, 375, 378, 414, 502, 505
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	9 cut(s)	302, 305, 308, 372, 375, 378, 414, 502, 505
HaeIII	GGCC	3 cut(s)	507, 565, 638
HapII	CCGG	3 cut(s)	187, 465, 635
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	82, 175, 371
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	6 cut(s)	53, 141, 158, 514, 620, 647
HpaII	CCGG	3 cut(s)	187, 465, 635
HphI	GGTGA	7 cut(s)	295, 355, 525, 537, 543, 549, 577
Hpy188I	TCNGA	7 cut(s)	62, 150, 480, 513, 519, 625, 646
Hpy188III	TCNNGA	1 cut(s)	229
Hpy99I	CGWCG	2 cut(s)	50, 541
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	9 cut(s)	46, 121, 283, 343, 427, 528, 537, 549, 555
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	5 cut(s)	192, 296, 367, 371, 663
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 135, 307, 377, 383, 449, 635
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	82, 175, 371
HspAI	GCGC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	95, 243, 480, 631
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	3 cut(s)	319, 383, 389
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	6 cut(s)	248, 277, 283, 491, 549, 555
MalI	GATC	4 cut(s)	97, 245, 482, 633
MboI	GATC	4 cut(s)	95, 243, 480, 631
MboII	GAAGA	3 cut(s)	90, 93, 522
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	2 cut(s)	131, 445
MluCI	AATT	3 cut(s)	217, 569, 581
MlyI	GAGTC	2 cut(s)	152, 629
MmeI	TCCRAC	1 cut(s)	603
MseI	TTAA	2 cut(s)	408, 431
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	187, 465, 635
MspR9I	CCNGG	2 cut(s)	589, 606
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	2 cut(s)	589, 606
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	7 cut(s)	21, 135, 307, 377, 383, 449, 635
NdeII	GATC	4 cut(s)	95, 243, 480, 631
NlaIII	CATG	3 cut(s)	82, 175, 371
NlaIV	GGNNCC	3 cut(s)	180, 199, 639
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	3 cut(s)	283, 549, 555
NsbI	TGCGCA	1 cut(s)	451
NspI	RCATGY	2 cut(s)	82, 371
PaeI	GCATGC	1 cut(s)	371
PaqCI	CACCTGC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	545
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	53, 141, 514, 647
PkrI	GCNGC	9 cut(s)	303, 306, 309, 373, 376, 379, 415, 503, 506
PleI	GAGTC	2 cut(s)	152, 628
PpsI	GAGTC	2 cut(s)	152, 628
Psp6I	CCWGG	2 cut(s)	587, 604
PspGI	CCWGG	2 cut(s)	587, 604
PspN4I	GGNNCC	3 cut(s)	180, 199, 639
PspPI	GGNCC	1 cut(s)	637
PsuI	RGATCY	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	408, 431
SatI	GCNGC	9 cut(s)	302, 305, 308, 372, 375, 378, 414, 502, 505
Sau3AI	GATC	4 cut(s)	95, 243, 480, 631
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	2 cut(s)	152, 629
ScrFI	CCNGG	2 cut(s)	589, 606
SduI	GDGCHC	2 cut(s)	131, 445
SetI	ASST	7 cut(s)	26, 73, 295, 365, 399, 498, 562
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	3 cut(s)	217, 569, 581
SsiI	CCGC	8 cut(s)	50, 105, 302, 305, 374, 413, 501, 504
StyD4I	CCNGG	2 cut(s)	587, 604
TaaI	ACNGT	9 cut(s)	46, 121, 283, 343, 427, 528, 537, 549, 555
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	4 cut(s)	165, 403, 436, 618
TasI	AATT	3 cut(s)	217, 569, 581
TauI	GCSGC	6 cut(s)	304, 307, 377, 416, 504, 507
TfiI	GAWTC	4 cut(s)	53, 141, 514, 647
Tru1I	TTAA	2 cut(s)	408, 431
Tru9I	TTAA	2 cut(s)	408, 431
TscAI	CASTG	2 cut(s)	22, 659
TseFI	GTSAC	3 cut(s)	283, 549, 555
TseI	GCWGC	3 cut(s)	307, 371, 377
Tsp45I	GTSAC	3 cut(s)	283, 549, 555
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	22, 659
XceI	RCATGY	2 cut(s)	82, 371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.