RLG00000021779

Protein of unknown function (DUF3675)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003694
Physical Location & Seq
Forward (+)
78134953 .. 78135642
690 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021779

Sequence Viewer

Length: 399 bp
ATGGATCGGAAAAACAAGAAAGAAGACCAAGAGGAACGGGTTAATATTCTTGATGACTTAGCAGCTGGGATTAAGGGACCAGAAGAGCCACCACGATCAAGTGCAGAATGTGAAATCTGTCAGGCAGAGGAGTTCATAGACAAACTGGAATCCCCTTGTCATTGCAGTGGTACTCTTAAGTATGCACATAGAGATTGTATCCAGCGGTGGATAAACTCTTGCTACAATACCATGTGCGAATTGAAATCTCCATATGAAGGTGGGTTTACCATAACAGTACCACCCCCGCCTACTCCGGAGGAGTTGGAAGCTCAAATGGCACCAGATGAGGCTGAGAGGGAGGCCGAAATAGCAAGGGAAGACGCTCGAAGAGCAACAGAGGTTGCCGGATTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3675 RINGv

Protein Analysis

133

Amino Acids

14.9

Weight (kDa)

4.56

Isoelectric Point (pI)

71.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 37 - 81 1.9e-11 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 2 cut(s) 205, 287
AclWI GGATC 1 cut(s) 12
AfaI GTAC 2 cut(s) 172, 279
AfiI CCNNNNNNNGG 1 cut(s) 257
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 244, 395
AluBI AGCT 2 cut(s) 65, 311
AluI AGCT 2 cut(s) 65, 311
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 2 cut(s) 30, 366
BbvI GCAGC 1 cut(s) 74
BciVI GTATCC 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 78, 321
BpiI GAAGAC 2 cut(s) 30, 366
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 160
BseAI TCCGGA 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 143, 314
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 296, 387
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 2 cut(s) 4, 95
BspACI CCGC 2 cut(s) 205, 287
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 325
BspEI TCCGGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 78, 321
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 2 cut(s) 78, 364
BspT107I GGYRCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 150
BssMI GATC 2 cut(s) 4, 95
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 2 cut(s) 78, 364
BstAFI CTTAAG 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 58, 333
BstKTI GATC 2 cut(s) 7, 98
BstMBI GATC 2 cut(s) 4, 95
BstMWI GCNNNNNNNGC 3 cut(s) 317, 350, 371
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 2 cut(s) 30, 366
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 1 cut(s) 371
Csp6I GTAC 2 cut(s) 171, 278
CviAII CATG 1 cut(s) 232
CviJI RGCY 5 cut(s) 65, 88, 311, 332, 344
CviKI_1 RGCY 5 cut(s) 65, 88, 311, 332, 344
CviQI GTAC 2 cut(s) 171, 278
DdeI CTNAG 2 cut(s) 58, 333
DpnI GATC 2 cut(s) 6, 97
DpnII GATC 2 cut(s) 4, 95
Eam1104I CTCTTC 2 cut(s) 78, 364
EarI CTCTTC 2 cut(s) 78, 364
Eco47I GGWCC 1 cut(s) 77
FaeI CATG 1 cut(s) 235
FaiI YATR 7 cut(s) 137, 183, 189, 233, 253, 255, 272
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 231
FauI CCCGC 1 cut(s) 294
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 1 cut(s) 344
HapII CCGG 2 cut(s) 296, 387
HgaI GACGC 1 cut(s) 371
Hin1II CATG 1 cut(s) 235
HinfI GANTC 1 cut(s) 149
HpaII CCGG 2 cut(s) 296, 387
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 50, 296
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 104, 165, 185
HpyF10VI GCNNNNNNNGC 3 cut(s) 317, 350, 371
HpyF3I CTNAG 2 cut(s) 58, 333
Hsp92II CATG 1 cut(s) 235
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 4, 95
LguI GCTCTTC 2 cut(s) 78, 364
LpnPI CCDG 7 cut(s) 51, 93, 107, 131, 215, 309, 336
Lsp1109I GCAGC 1 cut(s) 74
MalI GATC 2 cut(s) 6, 97
MboI GATC 2 cut(s) 4, 95
MboII GAAGA 4 cut(s) 35, 95, 371, 381
MluCI AATT 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 7 cut(s) 25, 121, 292, 322, 330, 334, 373
MroI TCCGGA 1 cut(s) 295
MseI TTAA 3 cut(s) 42, 72, 177
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 2 cut(s) 65, 205
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 296, 387
MwoI GCNNNNNNNGC 3 cut(s) 317, 350, 371
NdeI CATATG 1 cut(s) 253
NdeII GATC 2 cut(s) 4, 95
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 2 cut(s) 78, 321
PciSI GCTCTTC 2 cut(s) 78, 364
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 78, 321
PspPI GGNCC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 172, 279
RsaNI GTAC 2 cut(s) 171, 278
RseI CAYNNNNRTG 1 cut(s) 165
SapI GCTCTTC 2 cut(s) 78, 364
SaqAI TTAA 3 cut(s) 42, 72, 177
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 4, 95
Sau96I GGNCC 1 cut(s) 77
SetI ASST 4 cut(s) 67, 262, 313, 384
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 239
SsiI CCGC 2 cut(s) 205, 287
SspI AATATT 1 cut(s) 46
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 367
TasI AATT 1 cut(s) 239
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 42, 72, 177
Tru9I TTAA 3 cut(s) 42, 72, 177
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 124, 270
TspRI CASTG 1 cut(s) 172
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.