Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003694

Physical Location & Seq

Genomic Coordinates Forward (+)

59052960 .. 59060383

Gene Structure 7424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG374300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGATATTGGAGGTCCCGATCTCTATCTTTGAGAATACAGAAGAATTCGAGAGAGAGGGAGAGCACACTGAGATGGATCATGAAGTGGTCATAGAAGCTGGGTGTGGATTAGAAGAATCGTCATGTGCTGAGTGTAAAATATGCCAGCAGGAGGATGTCATTGACAAAATGAACGCTCCATGTTGTTGCTACGACACTTTAAAGGTATTCCTTAGGGTTGGGGTTGCAAATCGTTTGCGCGTAGAGAATGCACACAAAAAATGGATAAACTTGCGTCGCAAGACCATTTGCGAACTTTGTAAACATCCGTATGAAGGTGGTTATATCATAACAGTGCCTCCACAACGGCGTCCTACAAGGAGAAGGGAAGTGGAAAATCAAAGCGTGCAGGCGGAGGCAGCCGCAGCAGAGTTATACGTCGCTACAAATGAATCTATTTGTTGTGCAAGTGTAGCATGCCAAATTGCTTCCATCATAATTACTGGTCTTTACCTTCCTTTCATTGCGGGTGAACTATCCGGCTTCCTCGATCCCTTTCACCCTAGTCGCTCCACGAGCCCTGGTCACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008970 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0016298 GO:0016787 GO:0016788 GO:0034644 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0052689 GO:0071214 GO:0071478 GO:0071482 GO:0071493 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

191

Amino Acids

21.39

Weight (kDa)

5.11

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15710 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470 FvH4_6g48470
malus_domestica	MD09G1051400.v1.1 MD17G1041600.v1.1
prunus_persica	Prupe.3G267400_v2.0.a1
rosa_laevigata	RLG00000008079 RLG00000021771 RLG00000021779
rosa_multiflora	Rmu_co8372247.1_g000001 Rmu_co8415085.1_g000001 Rmu_sc0003354.1_g000020 Rmu_sc0003551.1_g000007
rosa_roxburghii	Rroxscaffold_1G00024980 Rroxscaffold_2G00083030 Rroxscaffold_5G00359110
rosa_rugosa	Rorug02G0533300.1 Rorug02G0533700 Rorug04G0132900 Rorug04G0133000
rosa_samantha	Rh2AG602500 Rh2BG615800 Rh2CG584200 Rh2DG626000 Rh2DG626900 Rh4AG193900 Rh4BG192400 Rh4CG204900 Rh4DG191600 Rh5BG374300
rosa_wichuraiana	Rw4G016500 Rw5G034110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	243
AciI	CCGC	3 cut(s)	395, 405, 509
AclWI	GGATC	2 cut(s)	87, 527
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	154, 317
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	87, 527
ApeKI	GCWGC	2 cut(s)	401, 407
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	524, 533
AvaII	GGWCC	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	413, 419
BccI	CCATC	2 cut(s)	70, 482
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	564
BfaI	CTAG	1 cut(s)	546
BisI	GCNGC	3 cut(s)	402, 405, 408
BlsI	GCNGC	3 cut(s)	403, 406, 409
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	564
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	562
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 317
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	2 cut(s)	163, 307
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	154, 317
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	2 cut(s)	63, 123
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	413, 419
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	2 cut(s)	154, 317
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	69, 563
Bsp143I	GATC	3 cut(s)	21, 79, 532
BspACI	CCGC	3 cut(s)	395, 405, 509
BspCNI	CTCAG	2 cut(s)	64, 124
BspFNI	CGCG	1 cut(s)	243
BspHI	TCATGA	2 cut(s)	82, 572
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	2 cut(s)	87, 527
BsrDI	GCAATG	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	3 cut(s)	21, 79, 532
BssNI	GRCGYC	1 cut(s)	352
BssSI	CACGAG	1 cut(s)	556
Bst2BI	CACGAG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	352
BstC8I	GCNNGC	4 cut(s)	149, 389, 393, 460
BstDEI	CTNAG	3 cut(s)	72, 132, 215
BstF5I	GGATG	2 cut(s)	163, 307
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	3 cut(s)	24, 82, 535
BstMBI	GATC	3 cut(s)	21, 79, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 407, 455, 558
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	562
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	413, 419
Bsu36I	CCTNAGG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	163, 307
BtsIMutI	CAGTG	2 cut(s)	69, 342
Cac8I	GCNNGC	4 cut(s)	149, 389, 393, 460
CciI	TCATGA	2 cut(s)	82, 572
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	2 cut(s)	266, 341
CviAII	CATG	5 cut(s)	83, 126, 183, 459, 573
CviJI	RGCY	4 cut(s)	101, 404, 525, 561
CviKI_1	RGCY	4 cut(s)	101, 404, 525, 561
DdeI	CTNAG	3 cut(s)	72, 132, 215
DpnI	GATC	3 cut(s)	23, 81, 534
DpnII	GATC	3 cut(s)	21, 79, 532
DraI	TTTAAA	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	5 cut(s)	86, 129, 186, 462, 576
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	5 cut(s)	82, 125, 182, 458, 572
FauI	CCCGC	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	402, 405, 408
FokI	GGATG	2 cut(s)	170, 294
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	402, 405, 408
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	402, 405, 408
GsaI	CCCAGC	1 cut(s)	105
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	2 cut(s)	266, 341
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	5 cut(s)	86, 129, 186, 462, 576
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	119, 434
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	2 cut(s)	524, 533
Hpy166II	GTNNAC	2 cut(s)	305, 515
Hpy188III	TCNNGA	4 cut(s)	19, 52, 83, 573
Hpy8I	GTNNAC	2 cut(s)	305, 515
Hpy99I	CGWCG	2 cut(s)	282, 425
HpyAV	CCTTC	3 cut(s)	311, 360, 506
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	230, 254, 391, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 407, 455, 558
HpyF3I	CTNAG	3 cut(s)	72, 132, 215
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	5 cut(s)	86, 129, 186, 462, 576
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	21, 79, 532
LmnI	GCTCC	2 cut(s)	184, 557
LpnPI	CCDG	7 cut(s)	87, 137, 161, 377, 471, 535, 549
Lsp1109I	GCAGC	2 cut(s)	413, 419
MaeI	CTAG	1 cut(s)	546
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	3 cut(s)	23, 81, 534
MboI	GATC	3 cut(s)	21, 79, 532
MboII	GAAGA	2 cut(s)	56, 128
MhlI	GDGCHC	2 cut(s)	69, 563
MluCI	AATT	3 cut(s)	47, 465, 480
MnlI	CCTC	6 cut(s)	7, 52, 148, 351, 391, 539
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	3 cut(s)	74, 312, 335
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	401, 407, 455, 558
NdeII	GATC	3 cut(s)	21, 79, 532
NlaIII	CATG	5 cut(s)	86, 129, 186, 462, 576
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	462
PagI	TCATGA	2 cut(s)	82, 572
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	119, 434
PkrI	GCNGC	3 cut(s)	403, 406, 409
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
RseI	CAYNNNNRTG	3 cut(s)	74, 312, 335
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	3 cut(s)	402, 405, 408
Sau3AI	GATC	3 cut(s)	21, 79, 532
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	2 cut(s)	69, 563
SetI	ASST	6 cut(s)	18, 103, 210, 322, 423, 498
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	3 cut(s)	74, 312, 335
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	3 cut(s)	47, 465, 480
SsiI	CCGC	3 cut(s)	395, 405, 509
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	51, 531
TasI	AATT	3 cut(s)	47, 465, 480
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	119, 434
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	2 cut(s)	76, 342
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	2 cut(s)	401, 407
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	5 cut(s)	99, 188, 330, 447, 493
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	76, 342
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	462
XspI	CTAG	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.