Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

66317853 .. 66323193

Gene Structure 5341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0533700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTACCCGTGTTTTTCCATGATGGTAGGCGGGACTCTGGAGGTAGTGACTTGAGGGATACAATTGATAGAAGCTATTCTCCAAGGCGAGGGTATTCACCAGCAAGAGATGCAAGAGGCCGACATACACTTCGTGACTATAGTCCATCCAGGTCCCTTGAAAACGAAAGTAAGAGAAGGAAGAGACAGCACTTGGATGATCACAGTGATTATTCTGGAAGTTTGAGAATTCCAAACGAGCCTGAAGATGAAGCTAAAGAAGCCAGAAGTGTTATTCAAAAGAAGATGCAGTTACAGGAAGTACAGTCGGAGCTCAAAATTGTTGAGCAACACAGATCTCAATTAGAGATCTACCTGGGAGAGAGGTCTCAAGAAGTGGATAGTCTTACTTCAAAAATACAAGAGCTTGAGGCTCAATTATACAAAGAGAAAGAGGAATGTAAGAGGATCTCCCACAAAGTTAAGAAGTTTGTAAAAGCACATTCTCATCATTCAAGGATACAAGACCAACTTAAGAGATCACAGGTCCGACTAAATAAGTTGGGAGATCAGCTTTGTTTAGATACTTATGGAATTGATGCCAATGAAGAGGATTCAAGCATTAATATTGTCAGCGATGGGGAGACTCATTTCCCAGTCCCCTTAAATAAGGAGCGGCTGAATGATGTTTCTCTGAGCAAGAAAAGGCTCGATGTAAATATGGATTCTGCCAAAGAACCAAAACAAGCTTTTTCAACAAGAGAGTACCTTACCACAACAAGAAGACCTCAGAAGCTCTCTCGGTGGAACATAAACCCTGCGCAATCAAATTTTGTGCATGAAAATGATGCAATGAATAACGGAATTGGGAGTCCAAAGCTCTTAGCAAAGGGCGACAAGCATGACAGGAGGAAGGCTGCTTCCTCTAGCGTCGTCTCTGCTGATGTGATAAAGAGTTCGGAGTCAGGACCTGTGGTACCCTCAACCAGCATGGCAGCTCACGCAGTGGATACTGAAAATGACATTGAACTGGACGGTAAAGTTGAGAATGTTGAGAATGCTTCTAGAAGAATCGAGGGGGAACCTACATATGAGAGCGGGATATTTCCATTTCCACTTCCTCCACCACCCCCATTCCCTCCGAAGAACTTTTCACAGCATGAGGGCGATGATGAGATTGTAGATATTGTGGATGGAGTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

394

Amino Acids

44.68

Weight (kDa)

6.3

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	801
Acc65I	GGTACC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	955
AccBSI	CCGCTC	2 cut(s)	655, 1077
AciI	CCGC	3 cut(s)	31, 655, 1077
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	228, 808
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	134, 985
AfaI	GTAC	3 cut(s)	303, 746, 957
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	7 cut(s)	161, 278, 393, 495, 597, 735, 1007
AjnI	CCWGG	2 cut(s)	149, 354
AluBI	AGCT	9 cut(s)	75, 254, 313, 406, 553, 728, 775, 859, 977
AluI	AGCT	9 cut(s)	75, 254, 313, 406, 553, 728, 775, 859, 977
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	4 cut(s)	178, 372, 617, 919
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	896, 974
ApoI	RAATTY	2 cut(s)	228, 808
ArsI	GACNNNNNNTTYG	2 cut(s)	114, 146
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	955
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	3 cut(s)	153, 526, 947
AsuHPI	GGTGA	1 cut(s)	90
AvaII	GGWCC	3 cut(s)	153, 526, 947
BanI	GGYRCC	1 cut(s)	955
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	769
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	883, 986
BccI	CCATC	4 cut(s)	17, 154, 611, 1166
BciT130I	CCWGG	2 cut(s)	151, 356
BciVI	GTATCC	3 cut(s)	52, 492, 982
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	4 cut(s)	178, 372, 617, 919
BfaI	CTAG	2 cut(s)	906, 1044
BfmI	CTRYAG	1 cut(s)	139
BfrI	CTTAAG	1 cut(s)	512
BfuI	GTATCC	3 cut(s)	52, 492, 982
BglII	AGATCT	2 cut(s)	335, 348
BisI	GCNGC	3 cut(s)	656, 897, 975
BlsI	GCNGC	3 cut(s)	657, 898, 976
Bme1390I	CCNGG	2 cut(s)	151, 356
Bme18I	GGWCC	3 cut(s)	153, 526, 947
BmgT120I	GGNCC	3 cut(s)	153, 526, 947
BmiI	GGNNCC	3 cut(s)	155, 957, 1062
BmrFI	CCNGG	2 cut(s)	151, 356
BmrI	ACTGGG	1 cut(s)	629
BmsI	GCATC	4 cut(s)	100, 276, 568, 817
BmuI	ACTGGG	1 cut(s)	629
BoxI	GACNNNNGTC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	769
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	3 cut(s)	73, 354, 428
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	83, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	635, 1014
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	151, 356
BseDI	CCNNGG	2 cut(s)	83, 355
BseGI	GGATG	3 cut(s)	146, 202, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	665, 782
BseNI	ACTGG	2 cut(s)	635, 1014
BseXI	GCAGC	2 cut(s)	883, 986
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	955
BsiHKAI	GWGCWC	1 cut(s)	315
BslFI	GGGAC	3 cut(s)	47, 139, 623
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	4 cut(s)	178, 372, 617, 919
BsmBI	CGTCTC	1 cut(s)	919
BsmFI	GGGAC	3 cut(s)	47, 139, 623
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
BspACI	CCGC	3 cut(s)	31, 655, 1077
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	2 cut(s)	666, 781
BspLI	GGNNCC	3 cut(s)	155, 957, 1062
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	955
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	372
BsrBI	CCGCTC	2 cut(s)	655, 1077
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	2 cut(s)	635, 1014
BssECI	CCNNGG	2 cut(s)	83, 355
BssMI	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	151, 356
Bst4CI	ACNGT	3 cut(s)	206, 306, 1016
Bst6I	CTCTTC	2 cut(s)	176, 582
BstAFI	CTTAAG	1 cut(s)	512
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	674, 768, 862
BstF5I	GGATG	3 cut(s)	146, 202, 1177
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	6 cut(s)	202, 338, 351, 450, 521, 550
BstMAI	GTCTC	4 cut(s)	178, 372, 617, 919
BstMBI	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 260, 980
BstNI	CCWGG	2 cut(s)	151, 356
BstPAI	GACNNNNGTC	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	149, 354
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	2 cut(s)	883, 986
BstV2I	GAAGAC	1 cut(s)	769
BstX2I	RGATCY	3 cut(s)	335, 348, 447
BstYI	RGATCY	3 cut(s)	335, 348, 447
BsuI	GTATCC	3 cut(s)	52, 492, 982
BsuRI	GGCC	1 cut(s)	120
BtgZI	GCGATG	2 cut(s)	630, 1161
BtsCI	GGATG	3 cut(s)	146, 202, 1177
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	2 cut(s)	211, 990
CaiI	CAGNNNCTG	1 cut(s)	950
CfoI	GCGC	1 cut(s)	802
Cfr13I	GGNCC	3 cut(s)	153, 526, 947
CseI	GACGC	1 cut(s)	898
Csp6I	GTAC	3 cut(s)	302, 745, 956
CviAII	CATG	5 cut(s)	20, 818, 881, 970, 1139
CviQI	GTAC	3 cut(s)	302, 745, 956
DdeI	CTNAG	3 cut(s)	674, 768, 862
DpnI	GATC	6 cut(s)	201, 337, 350, 449, 520, 549
DpnII	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
DraIII	CACNNNGTG	2 cut(s)	134, 985
Eam1104I	CTCTTC	2 cut(s)	176, 582
EarI	CTCTTC	2 cut(s)	176, 582
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	372
Eco47I	GGWCC	3 cut(s)	153, 526, 947
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	2 cut(s)	153, 947
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	149, 354
EcoT14I	CCWWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	919
FaeI	CATG	5 cut(s)	23, 821, 884, 973, 1142
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	3 cut(s)	47, 139, 623
FatI	CATG	5 cut(s)	19, 817, 880, 969, 1138
FauI	CCCGC	2 cut(s)	24, 1070
FauNDI	CATATG	1 cut(s)	1069
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	3 cut(s)	656, 897, 975
FokI	GGATG	2 cut(s)	133, 209
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	656, 897, 975
FspBI	CTAG	2 cut(s)	906, 1044
FspI	TGCGCA	1 cut(s)	801
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	3 cut(s)	656, 897, 975
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	120
HgaI	GACGC	1 cut(s)	898
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	5 cut(s)	23, 821, 884, 973, 1142
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	7 cut(s)	35, 593, 625, 704, 850, 941, 1050
HphI	GGTGA	1 cut(s)	90
Hpy188I	TCNGA	6 cut(s)	310, 530, 675, 771, 940, 1122
Hpy188III	TCNNGA	6 cut(s)	39, 134, 216, 371, 945, 1044
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	2 cut(s)	171, 886
HpyCH4III	ACNGT	3 cut(s)	206, 306, 1016
HpyCH4V	TGCA	4 cut(s)	113, 289, 817, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 260, 980
HpyF3I	CTNAG	3 cut(s)	674, 768, 862
Hsp92II	CATG	5 cut(s)	23, 821, 884, 973, 1142
HspAI	GCGC	1 cut(s)	800
KpnI	GGTACC	1 cut(s)	959
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
LmnI	GCTCC	2 cut(s)	310, 652
Lsp1109I	GCAGC	2 cut(s)	883, 986
LweI	GCATC	4 cut(s)	100, 276, 568, 817
MaeI	CTAG	2 cut(s)	906, 1044
MaeIII	GTNAC	4 cut(s)	3, 47, 134, 291
MalI	GATC	6 cut(s)	201, 337, 350, 449, 520, 549
MbiI	CCGCTC	2 cut(s)	655, 1077
MboI	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
MboII	GAAGA	7 cut(s)	193, 257, 295, 599, 774, 1059, 1135
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	335, 348, 447
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	8 cut(s)	63, 228, 318, 341, 416, 573, 808, 843
MlyI	GAGTC	4 cut(s)	29, 619, 859, 950
MmeI	TCCRAC	2 cut(s)	288, 553
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	4 cut(s)	462, 513, 603, 644
MslI	CAYNNNNRTG	2 cut(s)	195, 822
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	151, 356
MunI	CAATTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	2 cut(s)	151, 356
MwoI	GCNNNNNNNGC	3 cut(s)	110, 260, 980
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
NlaIII	CATG	5 cut(s)	23, 821, 884, 973, 1142
NlaIV	GGNNCC	3 cut(s)	155, 957, 1062
NmuCI	GTSAC	2 cut(s)	47, 134
NsbI	TGCGCA	1 cut(s)	801
PctI	GAATGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	76
PfeI	GAWTC	3 cut(s)	593, 704, 1050
PkrI	GCNGC	3 cut(s)	657, 898, 976
PleI	GAGTC	4 cut(s)	29, 619, 858, 949
PpsI	GAGTC	4 cut(s)	29, 619, 858, 949
PpuMI	RGGWCCY	2 cut(s)	153, 947
PshAI	GACNNNNGTC	1 cut(s)	141
PshBI	ATTAAT	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	315
Psp5II	RGGWCCY	2 cut(s)	153, 947
Psp6I	CCWGG	2 cut(s)	149, 354
PspGI	CCWGG	2 cut(s)	149, 354
PspN4I	GGNNCC	3 cut(s)	155, 957, 1062
PspPI	GGNCC	3 cut(s)	153, 526, 947
PspPPI	RGGWCCY	2 cut(s)	153, 947
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	3 cut(s)	335, 348, 447
RsaI	GTAC	3 cut(s)	303, 746, 957
RsaNI	GTAC	3 cut(s)	302, 745, 956
RseI	CAYNNNNRTG	2 cut(s)	195, 822
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	4 cut(s)	462, 513, 603, 644
SatI	GCNGC	3 cut(s)	656, 897, 975
Sau3AI	GATC	6 cut(s)	199, 335, 348, 447, 518, 547
Sau96I	GGNCC	3 cut(s)	153, 526, 947
SchI	GAGTC	4 cut(s)	29, 619, 859, 950
ScrFI	CCNGG	2 cut(s)	151, 356
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	4 cut(s)	100, 276, 568, 817
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	3 cut(s)	153, 526, 947
SmiMI	CAYNNNNRTG	2 cut(s)	195, 822
SmlI	CTYRAG	4 cut(s)	52, 369, 407, 512
SmoI	CTYRAG	4 cut(s)	52, 369, 407, 512
Sse9I	AATT	8 cut(s)	63, 228, 318, 341, 416, 573, 808, 843
SsiI	CCGC	3 cut(s)	31, 655, 1077
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	2 cut(s)	906, 1044
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	149, 354
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	206, 306, 1016
TaqI	TCGA	2 cut(s)	690, 1053
TasI	AATT	8 cut(s)	63, 228, 318, 341, 416, 573, 808, 843
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	3 cut(s)	593, 704, 1050
Tru1I	TTAA	4 cut(s)	462, 513, 603, 644
Tru9I	TTAA	4 cut(s)	462, 513, 603, 644
TscAI	CASTG	2 cut(s)	211, 990
TseFI	GTSAC	2 cut(s)	47, 134
TseI	GCWGC	2 cut(s)	896, 974
Tsp45I	GTSAC	2 cut(s)	47, 134
TspDTI	ATGAA	4 cut(s)	264, 600, 834, 848
TspGWI	ACGGA	1 cut(s)	855
TspRI	CASTG	2 cut(s)	211, 990
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	153, 526, 947
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	2 cut(s)	228, 808
XbaI	TCTAGA	1 cut(s)	1043
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	2 cut(s)	906, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.