Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

36556129 .. 36557292

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCACAAAAGAGCCTACAGAACTCAGAAACGAGACAAACGAGTTCGACTTCCAGAAATCATCAGTATTTGAACAGCATTACCCTCCTGGCTTTTTGAAAAAGGTGGTGGCAGATATTATAGCAACGTTTCTGTTGGTGTTTGTGACATGTGGTTCAGCTGCTCTTTCAGCTAGCGATGAACACAAGGTCTCAAAGCTTGGAGCTTCCATAGTCGGAGGGCTCATAGTAACGGCCATGATCTATGCCGTTGGCCACATCTCCGGAGCACACATGAACCCGGCTGTCACTCTAGCTTTTGCTGCGGTGAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGTAGCACAACTAACAGGATCAATATCAGCCTCTTTTACTCTGTCTATACTATTGCATCCCATTAAGCATGTGGGAACAACATCACCTTCTGGATCAGATATTCAAGCTCTAATCGTAGAGATAGTCATGACATTTTCCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTATTGGGGAGCTAGCAGGTATAGCGGTTGGCTCTGCAGTATGCATAACATCAATTTTTGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

197

Amino Acids

20.6

Weight (kDa)

6.36

Isoelectric Point (pI)

24.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 195	6.8e-36	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	530
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	2 cut(s)	305, 548
AclI	AACGTT	1 cut(s)	128
AclWI	GGATC	2 cut(s)	370, 445
AcoI	YGGCCR	3 cut(s)	3, 234, 253
AfaI	GTAC	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	74, 100, 449
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	8 cut(s)	161, 173, 199, 206, 296, 452, 524, 535
AluI	AGCT	8 cut(s)	161, 173, 199, 206, 296, 452, 524, 535
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	2 cut(s)	29, 196
AlwI	GGATC	2 cut(s)	370, 445
Aor13HI	TCCGGA	1 cut(s)	263
AoxI	GGCC	3 cut(s)	3, 234, 253
ApeKI	GCWGC	2 cut(s)	161, 302
Asp718I	GGTACC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	319, 420
AsuNHI	GCTAGC	2 cut(s)	173, 535
BalI	TGGCCA	2 cut(s)	5, 255
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	148, 289
BceAI	ACGGC	3 cut(s)	233, 249, 488
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	29, 196
BfaI	CTAG	3 cut(s)	174, 293, 536
BfmI	CTRYAG	2 cut(s)	18, 558
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	2 cut(s)	162, 303
BlsI	GCNGC	2 cut(s)	163, 304
Bme1390I	CCNGG	2 cut(s)	90, 281
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	2 cut(s)	90, 281
BmsI	GCATC	1 cut(s)	409
BmtI	GCTAGC	2 cut(s)	177, 539
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	367, 491
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	263
Bse8I	GATNNNNATC	2 cut(s)	367, 491
BseAI	TCCGGA	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	2 cut(s)	367, 491
BseMII	CTCAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	148, 289
BshFI	GGCC	3 cut(s)	5, 236, 255
BshNI	GGYRCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	264, 281
BsmAI	GTCTC	2 cut(s)	29, 196
BsnI	GGCC	3 cut(s)	5, 236, 255
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	225, 271
Bsp13I	TCCGGA	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	240, 362, 437
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	305, 548
BspANI	GGCC	3 cut(s)	5, 236, 255
BspCNI	CTCAG	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	530
BspOI	GCTAGC	2 cut(s)	177, 539
BspPI	GGATC	2 cut(s)	370, 445
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	240, 362, 437
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	175, 537
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	3 cut(s)	243, 365, 440
BstMAI	GTCTC	2 cut(s)	29, 196
BstMBI	GATC	3 cut(s)	240, 362, 437
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 302, 545
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	153, 416
BstSCI	CCNGG	2 cut(s)	88, 279
BstSFI	CTRYAG	2 cut(s)	18, 558
BstV1I	GCAGC	2 cut(s)	148, 289
BsuRI	GGCC	3 cut(s)	5, 236, 255
BtgI	CCRYGG	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	175, 537
CciI	TCATGA	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	7 cut(s)	150, 238, 274, 321, 413, 472, 484
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	242, 364, 439
DpnII	GATC	3 cut(s)	240, 362, 437
EaeI	YGGCCR	3 cut(s)	3, 234, 253
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	7 cut(s)	153, 241, 277, 324, 416, 475, 487
FatI	CATG	7 cut(s)	149, 237, 273, 320, 412, 471, 483
Fnu4HI	GCNGC	2 cut(s)	162, 303
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	162, 303
FspBI	CTAG	3 cut(s)	174, 293, 536
GluI	GCNGC	2 cut(s)	162, 303
HaeIII	GGCC	3 cut(s)	5, 236, 255
HapII	CCGG	2 cut(s)	264, 281
Hin1II	CATG	7 cut(s)	153, 241, 277, 324, 416, 475, 487
HindIII	AAGCTT	1 cut(s)	197
HpaII	CCGG	2 cut(s)	264, 281
HphI	GGTGA	2 cut(s)	319, 420
Hpy188I	TCNGA	3 cut(s)	29, 218, 442
Hpy188III	TCNNGA	4 cut(s)	55, 264, 435, 472
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	344, 400, 560, 567, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 302, 545
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	7 cut(s)	153, 241, 277, 324, 416, 475, 487
Kpn2I	TCCGGA	1 cut(s)	263
KpnI	GGTACC	1 cut(s)	335
Kzo9I	GATC	3 cut(s)	240, 362, 437
LmnI	GCTCC	3 cut(s)	203, 266, 532
Lsp1109I	GCAGC	2 cut(s)	148, 289
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	174, 293, 536
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	3 cut(s)	145, 229, 286
MalI	GATC	3 cut(s)	242, 364, 439
MboI	GATC	3 cut(s)	240, 362, 437
MhlI	GDGCHC	2 cut(s)	225, 271
MlsI	TGGCCA	2 cut(s)	5, 255
MluCI	AATT	2 cut(s)	336, 576
MluNI	TGGCCA	2 cut(s)	5, 255
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	96, 212, 303, 385
Mox20I	TGGCCA	2 cut(s)	5, 255
Mph1103I	ATGCAT	1 cut(s)	569
MroI	TCCGGA	1 cut(s)	263
MscI	TGGCCA	2 cut(s)	5, 255
MseI	TTAA	1 cut(s)	408
Msp20I	TGGCCA	2 cut(s)	5, 255
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	264, 281
MspR9I	CCNGG	2 cut(s)	90, 281
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	170, 302, 545
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	3 cut(s)	240, 362, 437
NheI	GCTAGC	2 cut(s)	173, 535
NlaIII	CATG	7 cut(s)	153, 241, 277, 324, 416, 475, 487
NlaIV	GGNNCC	1 cut(s)	333
NmuCI	GTSAC	2 cut(s)	145, 286
NsiI	ATGCAT	1 cut(s)	569
NspI	RCATGY	2 cut(s)	153, 416
PagI	TCATGA	1 cut(s)	471
PciI	ACATGT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	163, 304
PscI	ACATGT	1 cut(s)	149
Psp1406I	AACGTT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	2 cut(s)	162, 303
Sau3AI	GATC	3 cut(s)	240, 362, 437
ScrFI	CCNGG	2 cut(s)	90, 281
SduI	GDGCHC	2 cut(s)	225, 271
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	18, 558
Sse9I	AATT	2 cut(s)	336, 576
SsiI	CCGC	2 cut(s)	305, 548
SspMI	CTAG	3 cut(s)	174, 293, 536
StyD4I	CCNGG	2 cut(s)	88, 279
StyI	CCWWGG	1 cut(s)	320
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	336, 576
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	145, 286
TseI	GCWGC	2 cut(s)	161, 302
Tsp45I	GTSAC	2 cut(s)	145, 286
TspDTI	ATGAA	3 cut(s)	195, 290, 481
XceI	RCATGY	2 cut(s)	153, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XspI	CTAG	3 cut(s)	174, 293, 536
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.