Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

36543273 .. 36546942

Gene Structure 3670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCCACAAAAGAGCCTACAGAACTCAGAAACGAGACAAACGAGTTCGACTTCCAGAAATCATCAGTATTTGAACAGCATTACCCCTTTTTGAAAAAGGTGGTGGCAGAGATTATAGCAACGTTTCTGTTGGTGTTTGTGACATGTGGTTCAGCTGCTCTTTCAGCTAGCGATGAACACAAGGTCTCAAAGCTTGGAGCTTCCATAGTCGGTGGGCTCATAGTAACGGCCATGATCTATGCCGTTGGCCACATCTCCGGCGCACACATGAACCCGGCTGTCACTCTAGCTTTTTCTGCGGTGAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGTCGCACAACTAACAGGATCAATATCAGCCTCTTTTACTCTGTCTATACTATTGCATCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGATATTCAAGCTCTAATCGTAGAGATAGTCATGACATTTTGCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTATTGGGGAGCTAGCAGGTATAGCAGTTGGCTCTGCAGTATGCATAACATCAATTTTTGCAGGACCAATATCAGGTGGCTCCATGAACCCAGCCAGAACACTAGGACCTGCACTTGCTAGTTCATACTACAAGGGAATTTGGGTCTATGTGGTTGGACCTGTTACAGGAACCCTACTAGGGGCATGGAGTTACAACTTCATTCGGGTCACTGACAAGCCGATCCAGGCCATATCACCGCGCTCGTTTTCATTAAAGCTAAGGAGAATGAAAAGCGACAATGAAAGGCAGGTTGTTACCTGCACAAACCCTCACGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

281

Amino Acids

29.87

Weight (kDa)

8.86

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	27 - 237	3.1e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	524, 634, 796, 824
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	757
AciI	CCGC	2 cut(s)	299, 755
AclI	AACGTT	1 cut(s)	122
AclWI	GGATC	3 cut(s)	364, 439, 733
AcoI	YGGCCR	3 cut(s)	3, 228, 247
AcsI	RAATTY	1 cut(s)	654
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	4 cut(s)	590, 683, 696, 697
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	74, 94, 443
AjnI	CCWGG	1 cut(s)	741
Alw26I	GTCTC	2 cut(s)	29, 190
AlwI	GGATC	3 cut(s)	364, 439, 733
AoxI	GGCC	4 cut(s)	3, 228, 247, 744
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	654
Asp718I	GGTACC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	263, 759
AspS9I	GGNCC	3 cut(s)	581, 623, 674
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	3 cut(s)	313, 414, 744
AsuNHI	GCTAGC	2 cut(s)	167, 529
AvaII	GGWCC	3 cut(s)	581, 623, 674
BalI	TGGCCA	2 cut(s)	5, 249
BanI	GGYRCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	3 cut(s)	227, 243, 482
BciT130I	CCWGG	1 cut(s)	743
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	29, 190
BfaI	CTAG	6 cut(s)	168, 287, 530, 620, 636, 695
BfmI	CTRYAG	2 cut(s)	18, 552
BfuAI	ACCTGC	4 cut(s)	524, 634, 796, 824
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	275, 743
Bme18I	GGWCC	3 cut(s)	581, 623, 674
BmgT120I	GGNCC	3 cut(s)	581, 623, 674
BmiI	GGNNCC	3 cut(s)	327, 598, 688
BmrFI	CCNGG	2 cut(s)	275, 743
BmsI	GCATC	1 cut(s)	403
BmtI	GCTAGC	2 cut(s)	171, 533
Bpu10I	CCTNAGC	1 cut(s)	776
BpuMI	CCSGG	1 cut(s)	275
BsaBI	GATNNNNATC	2 cut(s)	361, 485
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	4 cut(s)	590, 683, 696, 697
Bse8I	GATNNNNATC	2 cut(s)	361, 485
BseBI	CCWGG	1 cut(s)	743
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	1 cut(s)	394
BseJI	GATNNNNATC	2 cut(s)	361, 485
BseLI	CCNNNNNNNGG	4 cut(s)	590, 683, 696, 697
BseMII	CTCAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	2 cut(s)	612, 802
Bsh1236I	CGCG	1 cut(s)	757
BshFI	GGCC	4 cut(s)	5, 230, 249, 746
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	258, 275
BslI	CCNNNNNNNGG	4 cut(s)	590, 683, 696, 697
BsmAI	GTCTC	2 cut(s)	29, 190
BsnI	GGCC	4 cut(s)	5, 230, 249, 746
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	234, 356, 431, 738
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	2 cut(s)	299, 755
BspANI	GGCC	4 cut(s)	5, 230, 249, 746
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	757
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	327, 598, 688
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	4 cut(s)	524, 634, 796, 824
BspOI	GCTAGC	2 cut(s)	171, 533
BspPI	GGATC	3 cut(s)	364, 439, 733
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	4 cut(s)	234, 356, 431, 738
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	169, 531
BstDEI	CTNAG	2 cut(s)	26, 776
BstDSI	CCRYGG	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	681
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	1 cut(s)	757
BstHHI	GCGC	2 cut(s)	263, 759
BstKTI	GATC	4 cut(s)	237, 359, 434, 741
BstMAI	GTCTC	2 cut(s)	29, 190
BstMBI	GATC	4 cut(s)	234, 356, 431, 738
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 296, 539
BstNI	CCWGG	1 cut(s)	743
BstNSI	RCATGY	2 cut(s)	147, 410
BstSCI	CCNGG	2 cut(s)	273, 741
BstSFI	CTRYAG	2 cut(s)	18, 552
BstUI	CGCG	1 cut(s)	757
BstV1I	GCAGC	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	5, 230, 249, 746
BtgI	CCRYGG	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	726
BveI	ACCTGC	4 cut(s)	524, 634, 796, 824
Cac8I	GCNNGC	2 cut(s)	169, 531
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	2 cut(s)	263, 759
Cfr13I	GGNCC	3 cut(s)	581, 623, 674
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	9 cut(s)	144, 232, 268, 315, 407, 466, 478, 601, 702
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	2 cut(s)	26, 776
DpnI	GATC	4 cut(s)	236, 358, 433, 740
DpnII	GATC	4 cut(s)	234, 356, 431, 738
EaeI	YGGCCR	3 cut(s)	3, 228, 247
Eco130I	CCWWGG	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	581, 623, 674
EcoNI	CCTNNNNNAGG	1 cut(s)	681
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	741
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	563
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	9 cut(s)	147, 235, 271, 318, 410, 469, 481, 604, 705
FatI	CATG	9 cut(s)	143, 231, 267, 314, 406, 465, 477, 600, 701
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	6 cut(s)	168, 287, 530, 620, 636, 695
GlaI	GCGC	2 cut(s)	262, 758
GluI	GCNGC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	611
HaeIII	GGCC	4 cut(s)	5, 230, 249, 746
HapII	CCGG	2 cut(s)	258, 275
HhaI	GCGC	2 cut(s)	263, 759
Hin1II	CATG	9 cut(s)	147, 235, 271, 318, 410, 469, 481, 604, 705
Hin6I	GCGC	2 cut(s)	261, 757
HinP1I	GCGC	2 cut(s)	261, 757
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	833
HpaII	CCGG	2 cut(s)	258, 275
HphI	GGTGA	3 cut(s)	313, 414, 744
Hpy188I	TCNGA	2 cut(s)	29, 436
Hpy188III	TCNNGA	4 cut(s)	55, 429, 466, 830
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	1 cut(s)	435
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	8 cut(s)	338, 394, 477, 554, 561, 578, 629, 819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 296, 539
HpyF3I	CTNAG	2 cut(s)	26, 776
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	9 cut(s)	147, 235, 271, 318, 410, 469, 481, 604, 705
HspAI	GCGC	2 cut(s)	261, 757
KpnI	GGTACC	1 cut(s)	329
Kzo9I	GATC	4 cut(s)	234, 356, 431, 738
LmnI	GCTCC	3 cut(s)	197, 526, 602
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	6 cut(s)	168, 287, 530, 620, 636, 695
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	7 cut(s)	139, 223, 280, 679, 707, 724, 811
MalI	GATC	4 cut(s)	236, 358, 433, 740
MboI	GATC	4 cut(s)	234, 356, 431, 738
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	2 cut(s)	5, 249
MluCI	AATT	3 cut(s)	330, 570, 654
MluNI	TGGCCA	2 cut(s)	5, 249
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	3 cut(s)	297, 379, 837
Mox20I	TGGCCA	2 cut(s)	5, 249
Mph1103I	ATGCAT	1 cut(s)	563
MscI	TGGCCA	2 cut(s)	5, 249
MseI	TTAA	2 cut(s)	402, 770
Msp20I	TGGCCA	2 cut(s)	5, 249
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	258, 275
MspR9I	CCNGG	2 cut(s)	275, 743
MvaI	CCWGG	1 cut(s)	743
MvnI	CGCG	1 cut(s)	757
MwoI	GCNNNNNNNGC	3 cut(s)	164, 296, 539
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	4 cut(s)	234, 356, 431, 738
NheI	GCTAGC	2 cut(s)	167, 529
NlaIII	CATG	9 cut(s)	147, 235, 271, 318, 410, 469, 481, 604, 705
NlaIV	GGNNCC	3 cut(s)	327, 598, 688
NmuCI	GTSAC	3 cut(s)	139, 280, 724
NsiI	ATGCAT	1 cut(s)	563
NspI	RCATGY	2 cut(s)	147, 410
PagI	TCATGA	1 cut(s)	465
PciI	ACATGT	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	833
PkrI	GCNGC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	623
PscI	ACATGT	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	741
PspN4I	GGNNCC	3 cut(s)	327, 598, 688
PspPI	GGNCC	3 cut(s)	581, 623, 674
PspPPI	RGGWCCY	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	2 cut(s)	402, 770
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	4 cut(s)	234, 356, 431, 738
Sau96I	GGNCC	3 cut(s)	581, 623, 674
ScrFI	CCNGG	2 cut(s)	275, 743
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	2 cut(s)	18, 552
SinI	GGWCC	3 cut(s)	581, 623, 674
Sse9I	AATT	3 cut(s)	330, 570, 654
SsiI	CCGC	2 cut(s)	299, 755
SspMI	CTAG	6 cut(s)	168, 287, 530, 620, 636, 695
StyD4I	CCNGG	2 cut(s)	273, 741
StyI	CCWWGG	1 cut(s)	314
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	330, 570, 654
TfiI	GAWTC	1 cut(s)	833
Tru1I	TTAA	2 cut(s)	402, 770
Tru9I	TTAA	2 cut(s)	402, 770
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	3 cut(s)	139, 280, 724
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	3 cut(s)	139, 280, 724
TspDTI	ATGAA	9 cut(s)	189, 284, 475, 617, 630, 706, 756, 800, 813
TspRI	CASTG	1 cut(s)	733
VpaK11BI	GGWCC	3 cut(s)	581, 623, 674
XagI	CCTNNNNNAGG	1 cut(s)	681
XapI	RAATTY	1 cut(s)	654
XceI	RCATGY	2 cut(s)	147, 410
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	6 cut(s)	168, 287, 530, 620, 636, 695
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.