Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

83818394 .. 83818894

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG616200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTTGACAACAGATAGGAGAGCTAGCAGGTATAGCCGTTGGGTCTGCGGTATGCATAACATCCATCTTTGCTGGAGGTTTGGAGTGAATATGCTCAGACCAATATCAGGTGGATCTATGAATCCAGCAAGGACAATAGGACCAGCACTTGCTAGTTCATATTACAATGGGATTTGGATCTACATGGTAGGACCAGTGATCGGAACACTACTAGGGGCATGGGCTTACAGCTTCATTCGGGTCAGTGACAAGCCGGTTCAGGCAATACCACGGCGTTCACTTTCACACCAGCTTCGTCAAGTGAGCGATGTTAATGGTGGGCAGGCTGTTACCAGCTGCGAAGACCCTCTAGATTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

120

Amino Acids

13.31

Weight (kDa)

9.81

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	22 - 76	9e-15	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	121, 185
AfiI	CCNNNNNNNGG	2 cut(s)	107, 200
AluBI	AGCT	5 cut(s)	23, 231, 292, 336, 359
AluI	AGCT	5 cut(s)	23, 231, 292, 336, 359
AlwI	GGATC	2 cut(s)	121, 185
ApeKI	GCWGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	140, 191
AsuNHI	GCTAGC	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	140, 191
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	2 cut(s)	21, 287
BfaI	CTAG	4 cut(s)	24, 153, 212, 350
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme18I	GGWCC	2 cut(s)	140, 191
BmgT120I	GGNCC	2 cut(s)	140, 191
BmtI	GCTAGC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 200
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	107, 200
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	107, 200
Bsp143I	GATC	3 cut(s)	113, 177, 198
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	18
BspOI	GCTAGC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	121, 185
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	3 cut(s)	113, 177, 198
BstC8I	GCNNGC	2 cut(s)	25, 324
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	116, 180, 201
BstMBI	GATC	3 cut(s)	113, 177, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	113, 177
BstYI	RGATCY	2 cut(s)	113, 177
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	201, 250
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	25, 324
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	2 cut(s)	140, 191
CviAII	CATG	2 cut(s)	184, 219
CviJI	RGCY	9 cut(s)	23, 36, 224, 231, 253, 292, 326, 336, 359
CviKI_1	RGCY	9 cut(s)	23, 36, 224, 231, 253, 292, 326, 336, 359
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	115, 179, 200
DpnII	GATC	3 cut(s)	113, 177, 198
Eco47I	GGWCC	2 cut(s)	140, 191
EcoT22I	ATGCAT	1 cut(s)	57
FaeI	CATG	2 cut(s)	187, 222
FaiI	YATR	8 cut(s)	33, 53, 57, 92, 119, 160, 185, 220
FatI	CATG	2 cut(s)	183, 218
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	4 cut(s)	24, 153, 212, 350
GluI	GCNGC	1 cut(s)	337
GsuI	CTGGAG	1 cut(s)	94
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	2 cut(s)	187, 222
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	6, 278
Hpy188I	TCNGA	2 cut(s)	98, 203
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	2 cut(s)	6, 278
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	187, 222
Kzo9I	GATC	3 cut(s)	113, 177, 198
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	4 cut(s)	24, 153, 212, 350
MaeIII	GTNAC	2 cut(s)	245, 328
MalI	GATC	3 cut(s)	115, 179, 200
MboI	GATC	3 cut(s)	113, 177, 198
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	2 cut(s)	113, 177
MnlI	CCTC	2 cut(s)	69, 357
Mph1103I	ATGCAT	1 cut(s)	57
MseI	TTAA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	3 cut(s)	113, 177, 198
NheI	GCTAGC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	187, 222
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	140, 191
PsuI	RGATCY	2 cut(s)	113, 177
PvuII	CAGCTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	3 cut(s)	113, 177, 198
Sau96I	GGNCC	2 cut(s)	140, 191
SetI	ASST	8 cut(s)	25, 32, 80, 112, 233, 294, 338, 361
SinI	GGWCC	2 cut(s)	140, 191
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	4 cut(s)	24, 153, 212, 350
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	2 cut(s)	201, 250
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	134, 147, 223
TspRI	CASTG	2 cut(s)	201, 250
VpaK11BI	GGWCC	2 cut(s)	140, 191
XbaI	TCTAGA	1 cut(s)	349
XspI	CTAG	4 cut(s)	24, 153, 212, 350
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.