Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

36479103 .. 36480496

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCAAGAACAGAGCTAGTTTCAGTAGAGAACCCAATAGTTGAACATCCATTTTACCCCCCTGGGTTTTTGAAAAAGGTGGTGGCAGAGATAATAGCTACGTTTCTGCTGGTGTTTGTGACATGTGGTTCGGCTGCTCTCTCTGCCAGTGATGAACGCAAAGTCTCAAAGCTTGGAGCTTCAATGACCGGAGGGCTTATAGTGACGGTGATGATCTACGCAGTCGGGCACATCTCTGGGGCACACATGAACCCGGCCGTCACTCTTGCTTTCGCTACTTTTAGACATTTTCCATGGAAACAGGTGCCAGTTTATGCATTAGCACAACTAATTGGATCAATATCAGCCTCATTTGCTGTGTCTGCATTACTGCACCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGAGCTTCAAGCTCTGGTCACAGAGATAATCGTGACATTTTCTATGATGTTCATCACTTCAGCAGTTGCCACCGATACTAAAGCTATAGGAGAGCTAGCAGGTATAGCAGTTGGGTCTGCAGTATGCATAACATCCATCTTTGCTGGACCAATATCAGGTGGATCTATGAATCCAGCCAGGACAATCGGACCAGCGCTTGCTAGTGCATACTACAACGGGATATGGATCTACATGGTCGGACCGGTGATCGGAGCACTACTAGGGGCATGGTCTTACAGCTTCATTCGGGTGAATGACAAGCCTGTTCAGGCCAGTCCACCACGTTCACTTTCACTCCAGCTTCGTCGAATAAAGAGCGATGTGCAGGCTGCTTCCATCTGCAAAGATCCTCTAGATTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

273

Amino Acids

28.58

Weight (kDa)

8.99

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	22 - 230	1.6e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	304
AclWI	GGATC	5 cut(s)	343, 418, 583, 647, 794
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	456
AfeI	AGCGCT	1 cut(s)	609
AfiI	CCNNNNNNNGG	2 cut(s)	569, 662
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	655
AgsI	TTSAA	4 cut(s)	44, 73, 183, 422
AjnI	CCWGG	2 cut(s)	61, 590
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	5 cut(s)	343, 418, 583, 647, 794
Aor51HI	AGCGCT	1 cut(s)	609
AoxI	GGCC	2 cut(s)	255, 723
ApeKI	GCWGC	2 cut(s)	134, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AsiGI	ACCGGT	1 cut(s)	655
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	3 cut(s)	560, 602, 653
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	4 cut(s)	220, 393, 670, 715
AsuNHI	GCTAGC	1 cut(s)	508
AvaII	GGWCC	3 cut(s)	560, 602, 653
BaeGI	GKGCMC	2 cut(s)	231, 244
BanI	GGYRCC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	2 cut(s)	121, 769
BccI	CCATC	2 cut(s)	557, 797
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	63, 592
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	5 cut(s)	17, 509, 615, 674, 806
BfmI	CTRYAG	2 cut(s)	498, 531
BfoI	RGCGCY	1 cut(s)	611
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	135, 783
BlsI	GCNGC	2 cut(s)	136, 784
Bme1390I	CCNGG	3 cut(s)	63, 254, 592
Bme18I	GGWCC	3 cut(s)	560, 602, 653
BmgT120I	GGNCC	3 cut(s)	560, 602, 653
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	3 cut(s)	63, 254, 592
BmtI	GCTAGC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	254
BsaBI	GATNNNNATC	3 cut(s)	340, 464, 638
BsaJI	CCNNGG	3 cut(s)	61, 62, 293
BsaWI	WCCGGW	2 cut(s)	188, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 662
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	3 cut(s)	147, 308, 726
Bse8I	GATNNNNATC	3 cut(s)	340, 464, 638
BseBI	CCWGG	2 cut(s)	63, 592
BseDI	CCNNGG	3 cut(s)	61, 62, 293
BseGI	GGATG	2 cut(s)	46, 545
BseJI	GATNNNNATC	3 cut(s)	340, 464, 638
BseLI	CCNNNNNNNGG	2 cut(s)	569, 662
BseNI	ACTGG	3 cut(s)	147, 308, 726
BseSI	GKGCMC	2 cut(s)	231, 244
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	121, 769
BsgI	GTGCAG	2 cut(s)	356, 797
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	257, 725
BshNI	GGYRCC	1 cut(s)	304
BshTI	ACCGGT	1 cut(s)	655
BsiEI	CGRYCG	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	3 cut(s)	189, 254, 656
BslI	CCNNNNNNNGG	2 cut(s)	569, 662
BsmAI	GTCTC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	257, 725
Bsp1286I	GDGCHC	3 cut(s)	231, 244, 670
Bsp143I	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
Bsp19I	CCATGG	1 cut(s)	293
BspANI	GGCC	2 cut(s)	257, 725
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	1 cut(s)	503
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	5 cut(s)	343, 418, 583, 647, 794
BspT107I	GGYRCC	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	147, 308, 726
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	61, 62, 293
BssMI	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	63, 592
Bst4CI	ACNGT	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	510, 612, 780
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	46, 545
BstH2I	RGCGCY	1 cut(s)	611
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	7 cut(s)	216, 338, 413, 578, 642, 663, 802
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 353, 362, 518
BstNI	CCWGG	2 cut(s)	63, 592
BstNSI	RCATGY	2 cut(s)	126, 389
BstSCI	CCNGG	3 cut(s)	61, 252, 590
BstSFI	CTRYAG	2 cut(s)	498, 531
BstSLI	GKGCMC	2 cut(s)	231, 244
BstV1I	GCAGC	2 cut(s)	121, 769
BstX2I	RGATCY	3 cut(s)	575, 639, 799
BstYI	RGATCY	3 cut(s)	575, 639, 799
BstZI	CGGCCG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	257, 725
BtgI	CCRYGG	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	46, 545
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	3 cut(s)	510, 612, 780
CfoI	GCGC	1 cut(s)	610
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	3 cut(s)	560, 602, 653
CpoI	CGGWCCG	1 cut(s)	653
CspAI	ACCGGT	1 cut(s)	655
CspI	CGGWCCG	1 cut(s)	653
CviAII	CATG	6 cut(s)	123, 247, 294, 386, 646, 681
DpnI	GATC	7 cut(s)	215, 337, 412, 577, 641, 662, 801
DpnII	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
EaeI	YGGCCR	1 cut(s)	255
EagI	CGGCCG	1 cut(s)	255
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	293
Eco47I	GGWCC	3 cut(s)	560, 602, 653
Eco47III	AGCGCT	1 cut(s)	609
Eco52I	CGGCCG	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	456
EcoRII	CCWGG	2 cut(s)	61, 590
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	2 cut(s)	319, 542
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	6 cut(s)	126, 250, 297, 389, 649, 684
FatI	CATG	6 cut(s)	122, 246, 293, 385, 645, 680
Fnu4HI	GCNGC	2 cut(s)	135, 783
FokI	GGATG	2 cut(s)	33, 532
Fsp4HI	GCNGC	2 cut(s)	135, 783
FspBI	CTAG	5 cut(s)	17, 509, 615, 674, 806
GlaI	GCGC	1 cut(s)	609
GluI	GCNGC	2 cut(s)	135, 783
GsuI	CTGGAG	1 cut(s)	734
HaeII	RGCGCY	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	257, 725
HapII	CCGG	3 cut(s)	189, 254, 656
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	6 cut(s)	126, 250, 297, 389, 649, 684
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	3 cut(s)	189, 254, 656
HphI	GGTGA	4 cut(s)	220, 393, 670, 715
Hpy166II	GTNNAC	2 cut(s)	731, 740
Hpy188I	TCNGA	4 cut(s)	415, 602, 653, 665
Hpy188III	TCNNGA	3 cut(s)	408, 445, 806
Hpy8I	GTNNAC	2 cut(s)	731, 740
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	101, 736
HpyCH4V	TGCA	8 cut(s)	317, 365, 373, 533, 540, 620, 778, 795
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 353, 362, 518
HpySE526I	ACGT	2 cut(s)	101, 736
Hsp92II	CATG	6 cut(s)	126, 250, 297, 389, 649, 684
HspAI	GCGC	1 cut(s)	608
Kzo9I	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
LmnI	GCTCC	2 cut(s)	176, 665
Lsp1109I	GCAGC	2 cut(s)	121, 769
MaeI	CTAG	5 cut(s)	17, 509, 615, 674, 806
MaeII	ACGT	2 cut(s)	101, 736
MaeIII	GTNAC	5 cut(s)	118, 202, 259, 430, 445
MalI	GATC	7 cut(s)	215, 337, 412, 577, 641, 662, 801
MboI	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
MflI	RGATCY	3 cut(s)	575, 639, 799
MhlI	GDGCHC	3 cut(s)	231, 244, 670
MluCI	AATT	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	3 cut(s)	185, 358, 813
Mph1103I	ATGCAT	2 cut(s)	319, 542
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	3 cut(s)	189, 254, 656
MspR9I	CCNGG	3 cut(s)	63, 254, 592
MvaI	CCWGG	2 cut(s)	63, 592
MwoI	GCNNNNNNNGC	4 cut(s)	143, 353, 362, 518
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	6 cut(s)	126, 250, 297, 389, 649, 684
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	5 cut(s)	118, 202, 259, 430, 445
NsiI	ATGCAT	2 cut(s)	319, 542
NspI	RCATGY	2 cut(s)	126, 389
PasI	CCCWGGG	1 cut(s)	62
PciI	ACATGT	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	583
PinAI	ACCGGT	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	136, 784
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	61, 590
PspGI	CCWGG	2 cut(s)	61, 590
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	3 cut(s)	560, 602, 653
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	575, 639, 799
RseI	CAYNNNNRTG	1 cut(s)	701
Rsr2I	CGGWCCG	1 cut(s)	653
RsrII	CGGWCCG	1 cut(s)	653
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	135, 783
Sau3AI	GATC	7 cut(s)	213, 335, 410, 575, 639, 660, 799
Sau96I	GGNCC	3 cut(s)	560, 602, 653
ScrFI	CCNGG	3 cut(s)	63, 254, 592
SduI	GDGCHC	3 cut(s)	231, 244, 670
SfcI	CTRYAG	2 cut(s)	498, 531
SinI	GGWCC	3 cut(s)	560, 602, 653
SmiMI	CAYNNNNRTG	1 cut(s)	701
Sse9I	AATT	1 cut(s)	330
SspMI	CTAG	5 cut(s)	17, 509, 615, 674, 806
StyD4I	CCNGG	3 cut(s)	61, 252, 590
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	2 cut(s)	104, 739
TaqI	TCGA	1 cut(s)	760
TasI	AATT	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	583
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	5 cut(s)	118, 202, 259, 430, 445
TseI	GCWGC	2 cut(s)	134, 782
Tsp45I	GTSAC	5 cut(s)	118, 202, 259, 430, 445
TspDTI	ATGAA	5 cut(s)	168, 263, 454, 596, 685
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	3 cut(s)	560, 602, 653
XbaI	TCTAGA	1 cut(s)	805
XceI	RCATGY	2 cut(s)	126, 389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	5 cut(s)	17, 509, 615, 674, 806
Zsp2I	ATGCAT	2 cut(s)	319, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.