Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

3195987 .. 3198372

Gene Structure 2386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATAGCAACGTATATGTTGGTGTTTGTCACGGCTGGCTCGGCTGCTCTTGCTGCCAGCGACGAACACCAAGTCTCAAAGCTTGGAGCTTCGATTGCAGGAGGGCTCATCATAACCGTGATGATCGATGCGGTCGGCCACGTCTCCGGTGCACACATGAACCCGGCCGTCACTCTTGCTTTCGCCGCCGTTGGGCACTTTCCATGGAAACAGGTAGGAGAACTAGCCGGCATCGCAGTTGGCTCCGCGGTTTGCATAACTTCAATCTTTGCCGGACCAATATCAGGTGGATCAATGAACCCAGCAAGAACAATAGGGCCAGCAGTTGCTAGTGCATACTACAAAGGAATATGGGTCTACGTCGTTGGACCAGTGATAGGAGCCCTACTTGGCTCATGGTCCTACAGCTTCATTCGGGTCAGTAATAACCCCATCCAGGCAGGATCACCACCCTCATTCGCATTCAAGCTTCGTCGAATCAAGAGCGACAGCAATGGACAACTTACCTTCAGAGACCCTCTGGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

178

Amino Acids

18.17

Weight (kDa)

9.21

Isoelectric Point (pI)

19.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	2 - 71	2.6e-13	Major intrinsic protein
MIP	PF00230	72 - 135	3.2e-18	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AccII	CGCG	1 cut(s)	248
AciI	CCGC	4 cut(s)	131, 186, 246, 248
AclWI	GGATC	2 cut(s)	298, 451
AcoI	YGGCCR	2 cut(s)	136, 165
AcuI	CTGAAG	1 cut(s)	493
AfiI	CCNNNNNNNGG	4 cut(s)	192, 284, 377, 436
AgsI	TTSAA	2 cut(s)	264, 466
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	435
AluBI	AGCT	5 cut(s)	82, 89, 408, 469, 530
AluI	AGCT	5 cut(s)	82, 89, 408, 469, 530
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	79, 148, 507
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	298, 451
AoxI	GGCC	3 cut(s)	136, 165, 317
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	44, 53
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspS9I	GGNCC	4 cut(s)	275, 317, 368, 399
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	438
AvaII	GGWCC	3 cut(s)	275, 368, 399
BaeGI	GKGCMC	2 cut(s)	154, 198
BanII	GRGCYC	2 cut(s)	108, 385
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	31, 40
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	3 cut(s)	48, 152, 173
BciT130I	CCWGG	1 cut(s)	437
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	79, 148, 507
BfaI	CTAG	2 cut(s)	224, 330
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	3 cut(s)	45, 54, 186
BlsI	GCNGC	3 cut(s)	46, 55, 187
Bme1390I	CCNGG	2 cut(s)	164, 437
Bme18I	GGWCC	3 cut(s)	275, 368, 399
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	4 cut(s)	275, 317, 368, 399
BmiI	GGNNCC	2 cut(s)	244, 382
BmrFI	CCNGG	2 cut(s)	164, 437
BmsI	GCATC	2 cut(s)	118, 240
BpuMI	CCSGG	1 cut(s)	164
Bsa29I	ATCGAT	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	203, 246
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	4 cut(s)	192, 284, 377, 436
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	1 cut(s)	437
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	203, 246
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	4 cut(s)	192, 284, 377, 436
BseMI	GCAATG	1 cut(s)	499
BseNI	ACTGG	1 cut(s)	371
BseSI	GKGCMC	2 cut(s)	154, 198
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	31, 40
BseYI	CCCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	248
Bsh1285I	CGRYCG	2 cut(s)	135, 168
BshFI	GGCC	3 cut(s)	138, 167, 319
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	2 cut(s)	135, 168
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	147, 164, 228, 273
BslI	CCNNNNNNNGG	4 cut(s)	192, 284, 377, 436
BsmAI	GTCTC	3 cut(s)	79, 148, 507
BsmBI	CGTCTC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	138, 167, 319
Bso31I	GGTCTC	1 cut(s)	507
Bsp1286I	GDGCHC	4 cut(s)	108, 154, 198, 385
Bsp143I	GATC	3 cut(s)	123, 290, 443
Bsp19I	CCATGG	1 cut(s)	203
BspACI	CCGC	4 cut(s)	131, 186, 246, 248
BspANI	GGCC	3 cut(s)	138, 167, 319
BspDI	ATCGAT	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	244, 382
BspPI	GGATC	2 cut(s)	298, 451
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	203, 246
BssMI	GATC	3 cut(s)	123, 290, 443
BssT1I	CCWWGG	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	4 cut(s)	37, 58, 229, 321
BstDSI	CCRYGG	2 cut(s)	203, 246
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	248
BstKTI	GATC	3 cut(s)	126, 293, 446
BstMAI	GTCTC	3 cut(s)	79, 148, 507
BstMBI	GATC	3 cut(s)	123, 290, 443
BstMCI	CGRYCG	2 cut(s)	135, 168
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 50, 53, 95, 185, 233
BstNI	CCWGG	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	162, 435
BstSFI	CTRYAG	1 cut(s)	403
BstSLI	GKGCMC	2 cut(s)	154, 198
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	31, 40
BstZI	CGGCCG	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	138, 167, 319
BsuTUI	ATCGAT	1 cut(s)	126
BtgI	CCRYGG	2 cut(s)	203, 246
BtgZI	GCGATG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	4 cut(s)	37, 58, 229, 321
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	4 cut(s)	275, 317, 368, 399
Cfr42I	CCGCGG	1 cut(s)	249
ClaI	ATCGAT	1 cut(s)	126
CviAII	CATG	3 cut(s)	157, 204, 396
DpnI	GATC	3 cut(s)	125, 292, 445
DpnII	GATC	3 cut(s)	123, 290, 443
EaeI	YGGCCR	2 cut(s)	136, 165
EagI	CGGCCG	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	2 cut(s)	108, 385
Eco31I	GGTCTC	1 cut(s)	507
Eco47I	GGWCC	3 cut(s)	275, 368, 399
Eco52I	CGGCCG	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	435
EcoT14I	CCWWGG	1 cut(s)	203
EcoT38I	GRGCYC	2 cut(s)	108, 385
ErhI	CCWWGG	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	160, 207, 399
FaiI	YATR	9 cut(s)	15, 17, 113, 158, 205, 257, 337, 352, 397
FatI	CATG	3 cut(s)	156, 203, 395
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	45, 54, 186
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	2 cut(s)	108, 385
Fsp4HI	GCNGC	3 cut(s)	45, 54, 186
FspBI	CTAG	2 cut(s)	224, 330
GluI	GCNGC	3 cut(s)	45, 54, 186
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	138, 167, 319
HapII	CCGG	4 cut(s)	147, 164, 228, 273
Hin1II	CATG	3 cut(s)	160, 207, 399
HindIII	AAGCTT	2 cut(s)	80, 467
HinfI	GANTC	2 cut(s)	477, 524
HpaII	CCGG	4 cut(s)	147, 164, 228, 273
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	2 cut(s)	152, 358
Hpy188I	TCNGA	1 cut(s)	512
Hpy188III	TCNNGA	2 cut(s)	481, 521
Hpy8I	GTNNAC	2 cut(s)	152, 358
Hpy99I	CGWCG	3 cut(s)	65, 365, 477
HpyAV	CCTTC	1 cut(s)	517
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	3 cut(s)	11, 141, 360
HpyCH4V	TGCA	4 cut(s)	98, 152, 255, 335
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 50, 53, 95, 185, 233
HpySE526I	ACGT	3 cut(s)	11, 141, 360
Hsp92II	CATG	3 cut(s)	160, 207, 399
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	123, 290, 443
LmnI	GCTCC	3 cut(s)	86, 248, 380
Lsp1109I	GCAGC	2 cut(s)	31, 40
LweI	GCATC	2 cut(s)	118, 240
MaeI	CTAG	2 cut(s)	224, 330
MaeII	ACGT	3 cut(s)	11, 141, 360
MaeIII	GTNAC	2 cut(s)	28, 169
MalI	GATC	3 cut(s)	125, 292, 445
MboI	GATC	3 cut(s)	123, 290, 443
MhlI	GDGCHC	4 cut(s)	108, 154, 198, 385
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	95, 463, 528
MroNI	GCCGGC	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	4 cut(s)	147, 164, 228, 273
MspR9I	CCNGG	2 cut(s)	164, 437
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	437
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	6 cut(s)	41, 50, 53, 95, 185, 233
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	203
NdeII	GATC	3 cut(s)	123, 290, 443
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	160, 207, 399
NlaIV	GGNNCC	2 cut(s)	244, 382
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	2 cut(s)	28, 169
PctI	GAATGC	1 cut(s)	461
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	477, 524
PkrI	GCNGC	3 cut(s)	46, 55, 187
Psp6I	CCWGG	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	244, 382
PspPI	GGNCC	4 cut(s)	275, 317, 368, 399
RseI	CAYNNNNRTG	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	249
SatI	GCNGC	3 cut(s)	45, 54, 186
Sau3AI	GATC	3 cut(s)	123, 290, 443
Sau96I	GGNCC	4 cut(s)	275, 317, 368, 399
ScrFI	CCNGG	2 cut(s)	164, 437
SduI	GDGCHC	4 cut(s)	108, 154, 198, 385
SfaNI	GCATC	2 cut(s)	118, 240
SfcI	CTRYAG	1 cut(s)	403
Sfr303I	CCGCGG	1 cut(s)	249
SgrBI	CCGCGG	1 cut(s)	249
SinI	GGWCC	3 cut(s)	275, 368, 399
SmiMI	CAYNNNNRTG	1 cut(s)	116
SsiI	CCGC	4 cut(s)	131, 186, 246, 248
SspMI	CTAG	2 cut(s)	224, 330
StyD4I	CCNGG	2 cut(s)	162, 435
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	3 cut(s)	14, 144, 363
TaqI	TCGA	3 cut(s)	92, 126, 475
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	477, 524
TscAI	CASTG	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	28, 169
TseI	GCWGC	2 cut(s)	44, 53
Tsp45I	GTSAC	2 cut(s)	28, 169
TspDTI	ATGAA	3 cut(s)	173, 311, 400
TspRI	CASTG	1 cut(s)	378
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	3 cut(s)	275, 368, 399
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	2 cut(s)	224, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.