Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

36551620 .. 36552170

Gene Structure 551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAACGACAGAATGGTTGTTTTGGTGCCAGTTTATGCATTAGCACAACTAATTGGATCAATTTCAGCCTCATTTACTGTGTCTGTATTACTGCACCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGAGCTTCAAGCTCTGGTCACAGAGATAATCGTGACATTTTCTATGATGTTCATCACTTCAGCAGTTGCCACCGATACTAAAGCTATAGGAGAGCTAGCAGGTATAGCAGTTGGGTCTGCAGTATGCATAACATCCATCTTTGCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

95

Amino Acids

9.64

Weight (kDa)

5.38

Isoelectric Point (pI)

22.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	9 - 93	2.8e-11	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	64, 139
AcuI	CTGAAG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	4 cut(s)	139, 146, 218, 229
AluI	AGCT	4 cut(s)	139, 146, 218, 229
AlwI	GGATC	2 cut(s)	64, 139
AsuHPI	GGTGA	1 cut(s)	114
AsuNHI	GCTAGC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	25
BccI	CCATC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	219, 252
BfuAI	ACCTGC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	27
BmtI	GCTAGC	1 cut(s)	233
BsaBI	GATNNNNATC	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	29
Bse8I	GATNNNNATC	1 cut(s)	185
BseGI	GGATG	1 cut(s)	266
BseJI	GATNNNNATC	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	29
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	56, 131
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	2 cut(s)	64, 139
BspT107I	GGYRCC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	56, 131
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	59, 134
BstMBI	GATC	2 cut(s)	56, 131
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	110
BstSFI	CTRYAG	2 cut(s)	219, 252
BtsCI	GGATG	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	231
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	5 cut(s)	68, 139, 146, 218, 229
CviKI_1	RGCY	5 cut(s)	68, 139, 146, 218, 229
DpnI	GATC	2 cut(s)	58, 133
DpnII	GATC	2 cut(s)	56, 131
Eco57I	CTGAAG	1 cut(s)	177
EcoT22I	ATGCAT	2 cut(s)	40, 263
FaeI	CATG	1 cut(s)	110
FaiI	YATR	7 cut(s)	36, 108, 179, 221, 239, 259, 263
FatI	CATG	1 cut(s)	106
FokI	GGATG	1 cut(s)	253
FspBI	CTAG	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	110
HphI	GGTGA	1 cut(s)	114
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	129, 166
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	38, 94, 254, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	56, 131
LpnPI	CCDG	5 cut(s)	42, 114, 134, 219, 264
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	151, 166
MalI	GATC	2 cut(s)	58, 133
MboI	GATC	2 cut(s)	56, 131
MluCI	AATT	2 cut(s)	51, 60
MnlI	CCTC	1 cut(s)	79
Mph1103I	ATGCAT	2 cut(s)	40, 263
MseI	TTAA	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	2 cut(s)	56, 131
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	151, 166
NsiI	ATGCAT	2 cut(s)	40, 263
NspI	RCATGY	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	2 cut(s)	56, 131
SetI	ASST	6 cut(s)	127, 141, 148, 220, 231, 238
SfcI	CTRYAG	2 cut(s)	219, 252
SgeI	CNNG	8 cut(s)	41, 119, 141, 155, 161, 178, 242, 246
Sse9I	AATT	2 cut(s)	51, 60
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	2 cut(s)	51, 60
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	2 cut(s)	151, 166
Tsp45I	GTSAC	2 cut(s)	151, 166
TspDTI	ATGAA	2 cut(s)	17, 175
XceI	RCATGY	1 cut(s)	110
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	2 cut(s)	40, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.