Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

36484226 .. 36486060

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCCACAAAAGAGCCTACAGAACTCAGAAACGAGACAAACGAGTTCGACTTCCAGAAATCATCAGTATTTGAACAGCATTACCCTCCTGGCTTTTTGAAAAAGGTGGTGGCAGAGATTATAGCAACGTTTCTGTTGGTGTTTGTGACATGTGGTTCAGCTGCTCTTTCAGCTAGCGATGAACACAAGGTCTCAAAGCTTGGAGCTTCCATAGTCGGAGGGCTCATAGTAACGGCCATGATCTATGCCGTTGGCCACATCTCCGGCGCACACATGAACCCGGCTGTCACTCTAGCTTTTGCTGCGGTGAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGTAGCACAACTAACAGGATCAATATCAGCCTCTTTTACTCTGTCTATGCTATTGCATCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGATATTCAAGCACTAATCATAGAGATAGTCATGACATTTTCCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTATTGGGGAGCTAGCAGGTATAGCAGTTGGCTCTGCAGTATGCATAACATCAATTTTTGCAGGACCAATATCAGGTGGCTCCATGAACCCAGCCAGAACACTAGGACCTGCACTTGCTAGTTCATACTACAAGGGAATTTGGGTCTATGTGGTTGGACCTGTTATAGGAACCCTACTAGGGGCATGGAGTTACAACTTCATTCGGGTCACTGACAAGCCGATCCAGGCCATATCACCGCGCTCGTTTTCATTCAAGCTAAGGAGAATGAAAAGCGACAATGATAGGCAGGTTGTTACCTGCACAGACCCTCTCGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

283

Amino Acids

30.04

Weight (kDa)

8.72

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	31 - 239	1e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	530, 640, 802, 830
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AccII	CGCG	1 cut(s)	763
AciI	CCGC	2 cut(s)	305, 761
AclI	AACGTT	1 cut(s)	128
AclWI	GGATC	3 cut(s)	370, 445, 739
AcoI	YGGCCR	3 cut(s)	3, 234, 253
AcsI	RAATTY	1 cut(s)	660
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	4 cut(s)	596, 689, 702, 703
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	74, 100, 449, 778
AjnI	CCWGG	2 cut(s)	88, 747
AluBI	AGCT	9 cut(s)	161, 173, 199, 206, 296, 524, 535, 781, 845
AluI	AGCT	9 cut(s)	161, 173, 199, 206, 296, 524, 535, 781, 845
Alw26I	GTCTC	2 cut(s)	29, 196
AlwI	GGATC	3 cut(s)	370, 445, 739
AoxI	GGCC	4 cut(s)	3, 234, 253, 750
ApeKI	GCWGC	2 cut(s)	161, 302
ApoI	RAATTY	1 cut(s)	660
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	269, 765
AspS9I	GGNCC	3 cut(s)	587, 629, 680
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	319, 420, 750
AsuNHI	GCTAGC	2 cut(s)	173, 535
AvaII	GGWCC	3 cut(s)	587, 629, 680
BalI	TGGCCA	2 cut(s)	5, 255
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	148, 289
BceAI	ACGGC	3 cut(s)	233, 249, 488
BciT130I	CCWGG	2 cut(s)	90, 749
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	2 cut(s)	29, 196
BfaI	CTAG	6 cut(s)	174, 293, 536, 626, 642, 701
BfmI	CTRYAG	2 cut(s)	18, 558
BfuAI	ACCTGC	4 cut(s)	530, 640, 802, 830
BisI	GCNGC	2 cut(s)	162, 303
BlsI	GCNGC	2 cut(s)	163, 304
Bme1390I	CCNGG	3 cut(s)	90, 281, 749
Bme18I	GGWCC	3 cut(s)	587, 629, 680
BmgT120I	GGNCC	3 cut(s)	587, 629, 680
BmiI	GGNNCC	3 cut(s)	333, 604, 694
BmrFI	CCNGG	3 cut(s)	90, 281, 749
BmsI	GCATC	1 cut(s)	409
BmtI	GCTAGC	2 cut(s)	177, 539
Bpu10I	CCTNAGC	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	281
BsaBI	GATNNNNATC	2 cut(s)	367, 491
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	596, 689, 702, 703
Bse8I	GATNNNNATC	2 cut(s)	367, 491
BseBI	CCWGG	2 cut(s)	90, 749
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	2 cut(s)	367, 491
BseLI	CCNNNNNNNGG	4 cut(s)	596, 689, 702, 703
BseMII	CTCAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	148, 289
BseYI	CCCAGC	1 cut(s)	613
BsgI	GTGCAG	2 cut(s)	618, 808
Bsh1236I	CGCG	1 cut(s)	763
BshFI	GGCC	4 cut(s)	5, 236, 255, 752
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	264, 281
BslI	CCNNNNNNNGG	4 cut(s)	596, 689, 702, 703
BsmAI	GTCTC	2 cut(s)	29, 196
BsnI	GGCC	4 cut(s)	5, 236, 255, 752
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	240, 362, 437, 744
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	305, 761
BspANI	GGCC	4 cut(s)	5, 236, 255, 752
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	333, 604, 694
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	4 cut(s)	530, 640, 802, 830
BspOI	GCTAGC	2 cut(s)	177, 539
BspPI	GGATC	3 cut(s)	370, 445, 739
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	4 cut(s)	240, 362, 437, 744
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	90, 749
BstC8I	GCNNGC	2 cut(s)	175, 537
BstDEI	CTNAG	2 cut(s)	26, 782
BstDSI	CCRYGG	1 cut(s)	320
BstENI	CCTNNNNNAGG	1 cut(s)	687
BstF5I	GGATG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	763
BstHHI	GCGC	2 cut(s)	269, 765
BstKTI	GATC	4 cut(s)	243, 365, 440, 747
BstMAI	GTCTC	2 cut(s)	29, 196
BstMBI	GATC	4 cut(s)	240, 362, 437, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 302, 545
BstNI	CCWGG	2 cut(s)	90, 749
BstNSI	RCATGY	2 cut(s)	153, 416
BstSCI	CCNGG	3 cut(s)	88, 279, 747
BstSFI	CTRYAG	2 cut(s)	18, 558
BstUI	CGCG	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	148, 289
BsuRI	GGCC	4 cut(s)	5, 236, 255, 752
BtgI	CCRYGG	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	732
BveI	ACCTGC	4 cut(s)	530, 640, 802, 830
Cac8I	GCNNGC	2 cut(s)	175, 537
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	2 cut(s)	269, 765
Cfr13I	GGNCC	3 cut(s)	587, 629, 680
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	9 cut(s)	150, 238, 274, 321, 413, 472, 484, 607, 708
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	2 cut(s)	26, 782
DpnI	GATC	4 cut(s)	242, 364, 439, 746
DpnII	GATC	4 cut(s)	240, 362, 437, 744
EaeI	YGGCCR	3 cut(s)	3, 234, 253
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	587, 629, 680
EcoNI	CCTNNNNNAGG	1 cut(s)	687
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	88, 747
EcoT14I	CCWWGG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	569
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	9 cut(s)	153, 241, 277, 324, 416, 475, 487, 610, 711
FatI	CATG	9 cut(s)	149, 237, 273, 320, 412, 471, 483, 606, 707
Fnu4HI	GCNGC	2 cut(s)	162, 303
FokI	GGATG	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	162, 303
FspBI	CTAG	6 cut(s)	174, 293, 536, 626, 642, 701
GlaI	GCGC	2 cut(s)	268, 764
GluI	GCNGC	2 cut(s)	162, 303
GsaI	CCCAGC	1 cut(s)	617
HaeIII	GGCC	4 cut(s)	5, 236, 255, 752
HapII	CCGG	2 cut(s)	264, 281
HhaI	GCGC	2 cut(s)	269, 765
Hin1II	CATG	9 cut(s)	153, 241, 277, 324, 416, 475, 487, 610, 711
Hin6I	GCGC	2 cut(s)	267, 763
HinP1I	GCGC	2 cut(s)	267, 763
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	839
HpaII	CCGG	2 cut(s)	264, 281
HphI	GGTGA	3 cut(s)	319, 420, 750
Hpy188I	TCNGA	3 cut(s)	29, 218, 442
Hpy188III	TCNNGA	4 cut(s)	55, 435, 472, 836
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	7 cut(s)	344, 400, 560, 567, 584, 635, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 302, 545
HpyF3I	CTNAG	2 cut(s)	26, 782
HpySE526I	ACGT	1 cut(s)	128
Hsp92II	CATG	9 cut(s)	153, 241, 277, 324, 416, 475, 487, 610, 711
HspAI	GCGC	2 cut(s)	267, 763
KpnI	GGTACC	1 cut(s)	335
Kzo9I	GATC	4 cut(s)	240, 362, 437, 744
LmnI	GCTCC	3 cut(s)	203, 532, 608
Lsp1109I	GCAGC	2 cut(s)	148, 289
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	6 cut(s)	174, 293, 536, 626, 642, 701
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	6 cut(s)	145, 229, 286, 713, 730, 817
MalI	GATC	4 cut(s)	242, 364, 439, 746
MboI	GATC	4 cut(s)	240, 362, 437, 744
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	2 cut(s)	5, 255
MluCI	AATT	3 cut(s)	336, 576, 660
MluNI	TGGCCA	2 cut(s)	5, 255
MmeI	TCCRAC	2 cut(s)	196, 658
MnlI	CCTC	5 cut(s)	96, 212, 303, 385, 843
Mox20I	TGGCCA	2 cut(s)	5, 255
Mph1103I	ATGCAT	1 cut(s)	569
MscI	TGGCCA	2 cut(s)	5, 255
MseI	TTAA	1 cut(s)	408
Msp20I	TGGCCA	2 cut(s)	5, 255
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	264, 281
MspR9I	CCNGG	3 cut(s)	90, 281, 749
MvaI	CCWGG	2 cut(s)	90, 749
MvnI	CGCG	1 cut(s)	763
MwoI	GCNNNNNNNGC	3 cut(s)	170, 302, 545
NciI	CCSGG	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	4 cut(s)	240, 362, 437, 744
NheI	GCTAGC	2 cut(s)	173, 535
NlaIII	CATG	9 cut(s)	153, 241, 277, 324, 416, 475, 487, 610, 711
NlaIV	GGNNCC	3 cut(s)	333, 604, 694
NmuCI	GTSAC	3 cut(s)	145, 286, 730
NsiI	ATGCAT	1 cut(s)	569
NspI	RCATGY	2 cut(s)	153, 416
PagI	TCATGA	1 cut(s)	471
PciI	ACATGT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	163, 304
PpuMI	RGGWCCY	1 cut(s)	629
PscI	ACATGT	1 cut(s)	149
Psp1406I	AACGTT	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	2 cut(s)	88, 747
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	88, 747
PspN4I	GGNNCC	3 cut(s)	333, 604, 694
PspPI	GGNCC	3 cut(s)	587, 629, 680
PspPPI	RGGWCCY	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	2 cut(s)	162, 303
Sau3AI	GATC	4 cut(s)	240, 362, 437, 744
Sau96I	GGNCC	3 cut(s)	587, 629, 680
ScrFI	CCNGG	3 cut(s)	90, 281, 749
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	18, 558
SinI	GGWCC	3 cut(s)	587, 629, 680
Sse9I	AATT	3 cut(s)	336, 576, 660
SsiI	CCGC	2 cut(s)	305, 761
SspMI	CTAG	6 cut(s)	174, 293, 536, 626, 642, 701
StyD4I	CCNGG	3 cut(s)	88, 279, 747
StyI	CCWWGG	1 cut(s)	320
TaiI	ACGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	48, 837
TasI	AATT	3 cut(s)	336, 576, 660
TfiI	GAWTC	1 cut(s)	839
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	739
TseFI	GTSAC	3 cut(s)	145, 286, 730
TseI	GCWGC	2 cut(s)	161, 302
Tsp45I	GTSAC	3 cut(s)	145, 286, 730
TspDTI	ATGAA	8 cut(s)	195, 290, 481, 623, 636, 712, 762, 806
TspRI	CASTG	1 cut(s)	739
VpaK11BI	GGWCC	3 cut(s)	587, 629, 680
XagI	CCTNNNNNAGG	1 cut(s)	687
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	2 cut(s)	153, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XspI	CTAG	6 cut(s)	174, 293, 536, 626, 642, 701
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.