Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

36509151 .. 36510438

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCAAAAACAGAGCTAGTTTCAGTAGAGAACCCAATAGTTGAACATCCATTTTACCCCCCTGGGTTTTTGAAAAAGGTGGTGGCAGAGATAATAGCTACGTTTCTGCTGGTGTTTGTGACATGTGGTTCGTCTGCTCTCTCTGCCAGTGATGAACGCAAAATCTCAAAGCTTGGAGCTTCAATGACCGGAGGGCTTATAGTGACGGTGATGATCTACGCAGTCGGGCACGTGCCAGCTTATGCATTAGCACAACTAATTGGATCAATATCAGCCTCATTTACTCTGTCTTTATTACTGCACCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGAGCTTCAAGCTCTAGTCACAGAGATAATCATAGGAGAGCTAGCAGGCATAGCAGTTGGGTCTGCAGTATGCATAACATCCATCTTTGCTGGACCAATATCAGGTGGATCTATGAATCCAGCCAGGACAATCGGACCAGCGCTTGCTAGTGCATACTACAACGGGATATGGATCTGCATGGTCGGACCGGTGATCGGAACACTACTAGGGGCATGGTCTTACAGCTTCATTCGGATGAATGACAAGCCTGTTCAGGCCAGTCCACCACGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

207

Amino Acids

21.37

Weight (kDa)

7.74

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	22 - 78	2.5e-06	Major intrinsic protein
MIP	PF00230	126 - 188	4.8e-16	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	271, 346, 457, 521
AcvI	CACGTG	1 cut(s)	232
AfeI	AGCGCT	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	443, 536
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	44, 73, 183, 350
AjnI	CCWGG	2 cut(s)	61, 464
AluBI	AGCT	9 cut(s)	16, 98, 172, 179, 239, 346, 353, 382, 567
AluI	AGCT	9 cut(s)	16, 98, 172, 179, 239, 346, 353, 382, 567
AlwI	GGATC	4 cut(s)	271, 346, 457, 521
Aor51HI	AGCGCT	1 cut(s)	483
AoxI	GGCC	1 cut(s)	597
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AsiGI	ACCGGT	1 cut(s)	529
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	3 cut(s)	434, 476, 527
AsuHPI	GGTGA	3 cut(s)	220, 321, 544
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	3 cut(s)	434, 476, 527
BaeGI	GKGCMC	1 cut(s)	231
BbrPI	CACGTG	1 cut(s)	232
BccI	CCATC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	63, 466
BfaI	CTAG	5 cut(s)	17, 356, 383, 489, 548
BfmI	CTRYAG	1 cut(s)	405
BfoI	RGCGCY	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	63, 466
Bme18I	GGWCC	3 cut(s)	434, 476, 527
BmgT120I	GGNCC	3 cut(s)	434, 476, 527
BmrFI	CCNGG	2 cut(s)	63, 466
BmtI	GCTAGC	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	232
BsaBI	GATNNNNATC	2 cut(s)	268, 512
BsaJI	CCNNGG	2 cut(s)	61, 62
BsaWI	WCCGGW	2 cut(s)	188, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 536
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	147, 600
Bse8I	GATNNNNATC	2 cut(s)	268, 512
BseBI	CCWGG	2 cut(s)	63, 466
BseDI	CCNNGG	2 cut(s)	61, 62
BseGI	GGATG	3 cut(s)	46, 419, 582
BseJI	GATNNNNATC	2 cut(s)	268, 512
BseLI	CCNNNNNNNGG	2 cut(s)	443, 536
BseNI	ACTGG	2 cut(s)	147, 600
BseSI	GKGCMC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	599
BshTI	ACCGGT	1 cut(s)	529
BsiSI	CCGG	2 cut(s)	189, 530
BslI	CCNNNNNNNGG	2 cut(s)	443, 536
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
BspANI	GGCC	1 cut(s)	599
BspMAI	CTGCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	4 cut(s)	271, 346, 457, 521
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	147, 600
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	61, 62
BssMI	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
Bst2UI	CCWGG	2 cut(s)	63, 466
Bst4CI	ACNGT	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	237, 384, 388, 486
BstF5I	GGATG	3 cut(s)	46, 419, 582
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	6 cut(s)	216, 266, 341, 452, 516, 537
BstMBI	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 392
BstNI	CCWGG	2 cut(s)	63, 466
BstNSI	RCATGY	2 cut(s)	126, 317
BstSCI	CCNGG	2 cut(s)	61, 464
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	449, 513
BstYI	RGATCY	2 cut(s)	449, 513
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	46, 419, 582
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	237, 384, 388, 486
CfoI	GCGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	434, 476, 527
CpoI	CGGWCCG	1 cut(s)	527
CspAI	ACCGGT	1 cut(s)	529
CspI	CGGWCCG	1 cut(s)	527
CviAII	CATG	4 cut(s)	123, 314, 520, 555
DpnI	GATC	6 cut(s)	215, 265, 340, 451, 515, 536
DpnII	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
Eco47I	GGWCC	3 cut(s)	434, 476, 527
Eco47III	AGCGCT	1 cut(s)	483
Eco72I	CACGTG	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	61, 464
EcoT22I	ATGCAT	2 cut(s)	247, 416
FaeI	CATG	4 cut(s)	126, 317, 523, 558
FatI	CATG	4 cut(s)	122, 313, 519, 554
FokI	GGATG	3 cut(s)	33, 406, 589
FspBI	CTAG	5 cut(s)	17, 356, 383, 489, 548
GlaI	GCGC	1 cut(s)	483
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	2 cut(s)	189, 530
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	4 cut(s)	126, 317, 523, 558
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	189, 530
HphI	GGTGA	3 cut(s)	220, 321, 544
Hpy166II	GTNNAC	2 cut(s)	605, 614
Hpy188I	TCNGA	5 cut(s)	343, 476, 527, 539, 576
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	2 cut(s)	605, 614
HpyAV	CCTTC	1 cut(s)	342
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	3 cut(s)	101, 231, 610
HpyCH4V	TGCA	6 cut(s)	245, 301, 407, 414, 494, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 392
HpySE526I	ACGT	3 cut(s)	101, 231, 610
Hsp92II	CATG	4 cut(s)	126, 317, 523, 558
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
LmnI	GCTCC	1 cut(s)	176
MaeI	CTAG	5 cut(s)	17, 356, 383, 489, 548
MaeII	ACGT	3 cut(s)	101, 231, 610
MaeIII	GTNAC	3 cut(s)	118, 202, 358
MalI	GATC	6 cut(s)	215, 265, 340, 451, 515, 536
MboI	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
MflI	RGATCY	2 cut(s)	449, 513
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	2 cut(s)	185, 286
Mph1103I	ATGCAT	2 cut(s)	247, 416
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	575
MspI	CCGG	2 cut(s)	189, 530
MspR9I	CCNGG	2 cut(s)	63, 466
MvaI	CCWGG	2 cut(s)	63, 466
MwoI	GCNNNNNNNGC	2 cut(s)	143, 392
NdeII	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	126, 317, 523, 558
NmuCI	GTSAC	3 cut(s)	118, 202, 358
NsiI	ATGCAT	2 cut(s)	247, 416
NspI	RCATGY	2 cut(s)	126, 317
PasI	CCCWGGG	1 cut(s)	62
PciI	ACATGT	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	457
PinAI	ACCGGT	1 cut(s)	529
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	232
PscI	ACATGT	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	61, 464
PspCI	CACGTG	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	61, 464
PspPI	GGNCC	3 cut(s)	434, 476, 527
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	449, 513
RseI	CAYNNNNRTG	1 cut(s)	575
Rsr2I	CGGWCCG	1 cut(s)	527
RsrII	CGGWCCG	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	6 cut(s)	213, 263, 338, 449, 513, 534
Sau96I	GGNCC	3 cut(s)	434, 476, 527
ScrFI	CCNGG	2 cut(s)	63, 466
SduI	GDGCHC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	3 cut(s)	434, 476, 527
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	1 cut(s)	258
SspMI	CTAG	5 cut(s)	17, 356, 383, 489, 548
StyD4I	CCNGG	2 cut(s)	61, 464
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	3 cut(s)	104, 234, 613
TasI	AATT	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	3 cut(s)	118, 202, 358
Tsp45I	GTSAC	3 cut(s)	118, 202, 358
TspDTI	ATGAA	4 cut(s)	168, 470, 559, 593
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	3 cut(s)	434, 476, 527
XceI	RCATGY	2 cut(s)	126, 317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	5 cut(s)	17, 356, 383, 489, 548
Zsp2I	ATGCAT	2 cut(s)	247, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.