Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

2595070 .. 2595252

Gene Structure 183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGAACCCAGCAAGGACAATAGGGCCAGCAATTACTAGTGCATACTACAAAGGAATATGGGACTACGTCGTTGAACCAGTGATAGGAGCCCTACTTGGCTCATGGTCCTACAGCTTCATTTGGGTCAGCGATAACCCGATCCAGGCAGTATCACCACCCTCATTCGCATCCAAGCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

61

Amino Acids

6.59

Weight (kDa)

8.1

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	1 - 37	2e-08	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	83, 142
AgsI	TTSAA	1 cut(s)	74
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	114, 175
AluI	AGCT	2 cut(s)	114, 175
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	23, 105
AsuHPI	GGTGA	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	23, 105
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 142
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	83, 142
BseNI	ACTGG	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	83, 142
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	23, 105
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	5 cut(s)	25, 89, 99, 114, 175
CviKI_1	RGCY	5 cut(s)	25, 89, 99, 114, 175
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	105
FaiI	YATR	3 cut(s)	43, 58, 103
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	101
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	173
HphI	GGTGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	5 cut(s)	21, 39, 90, 128, 155
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	66
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	1 cut(s)	88
PflFI	GACNNNGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	2 cut(s)	23, 105
PsyI	GACNNNGTC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	23, 105
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	3 cut(s)	69, 116, 177
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	105
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	1 cut(s)	30
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	141
TaiI	ACGT	1 cut(s)	69
TasI	AATT	1 cut(s)	30
TscAI	CASTG	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	17, 106
TspRI	CASTG	1 cut(s)	84
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	105
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.