Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

3056390 .. 3059466

Gene Structure 3077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1041900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCTCCAATTGATCAGTTAGCCTCTCCAGAAAACCACCCGGCAACCTCCCAAAATCCAAACACATATGATCACAATCCGCAGTCACCGATTGTTGAACAACCATATTACCCACATGGCTTTTTCAAAAAGGTGGTTGCAGAGATGATAGCAACGTATATGTTGGTGTTTGCCACGGCTGGCTCGGCTGCTCTTGCTGCCAGCGACGAACACCAAGTCTCAAAGCTTGGAGCTTCTATTGCAGGAGGGCTCATCATAACCGTGATGATCTATGCGGTCGGCCACATCTCCGGTGCACACATGAACCCGGCCGTCACTCTTGCTTTCGCCGCCGTTAGGCACTTTCCATGGAAACAGGTCCCAATTTATGCAGTAGCTCAACTAGCAGGATCAATATCTGCCTCGTTTACCCTGTATGTACTGTTGCACCCAATTAAACAACTAGGCACCACATCACCTTCTGGATCAGAGACCCAAGCTTTGATCGCAGAGATAATCATGACATTTTCCATGGTGTTCATCGCCTCTGCTGTCGCAACTGATACCAAAGCTGTAGGAGAACTAGCAGGGATCGCAGTTGGCTCCGCGGTTTGCATAACTTCAATTTTTGCCGGACCAATATCAGGTGGATCAATGAACCCAGCAAGAACAATAGGGCCAGCAATCGCTAGTGCATACTACAAAGGAATATGGGTCTATGTCGTTGGACCAGTGATAGGAGCCCTACTTGGTTCATGGTCCTACAGCTTCATTCGGGTCAGCGATAACCCCATCCAGGCAGTTTCACCACCCTCATTCGCATTCAACCTTCGTCGAATCAAGAGCGACAGCAACGGACAACTTACCTTCAGAGACCCTCTGGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

291

Amino Acids

30.46

Weight (kDa)

6.7

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	41 - 248	2.5e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	587
AciI	CCGC	5 cut(s)	80, 275, 330, 585, 587
AclWI	GGATC	4 cut(s)	397, 472, 578, 637
AcoI	YGGCCR	2 cut(s)	280, 309
AcuI	CTGAAG	1 cut(s)	832
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	4 cut(s)	336, 623, 716, 775
AgsI	TTSAA	4 cut(s)	98, 127, 603, 805
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	7 cut(s)	226, 233, 377, 479, 551, 747, 869
AluI	AGCT	7 cut(s)	226, 233, 377, 479, 551, 747, 869
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	223, 464, 846
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	4 cut(s)	397, 472, 578, 637
AoxI	GGCC	3 cut(s)	280, 309, 656
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	188, 197
ArsI	GACNNNNNNTTYG	4 cut(s)	201, 233, 463, 495
AspS9I	GGNCC	5 cut(s)	358, 614, 656, 707, 738
AsuC2I	CCSGG	2 cut(s)	41, 308
AsuHPI	GGTGA	3 cut(s)	78, 447, 777
AvaII	GGWCC	4 cut(s)	358, 614, 707, 738
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	252, 724
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	175, 184
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	3 cut(s)	192, 296, 317
BciT130I	CCWGG	1 cut(s)	776
BclI	TGATCA	2 cut(s)	13, 70
BcnI	CCSGG	2 cut(s)	41, 308
BcoDI	GTCTC	3 cut(s)	223, 464, 846
BfaI	CTAG	4 cut(s)	383, 443, 563, 669
BfmI	CTRYAG	2 cut(s)	552, 742
BisI	GCNGC	3 cut(s)	189, 198, 330
BlsI	GCNGC	3 cut(s)	190, 199, 331
Bme1390I	CCNGG	3 cut(s)	41, 308, 776
Bme18I	GGWCC	4 cut(s)	358, 614, 707, 738
BmgT120I	GGNCC	5 cut(s)	358, 614, 656, 707, 738
BmiI	GGNNCC	5 cut(s)	6, 360, 448, 583, 721
BmrFI	CCNGG	3 cut(s)	41, 308, 776
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	2 cut(s)	41, 308
BsaBI	GATNNNNATC	2 cut(s)	75, 394
BsaI	GGTCTC	2 cut(s)	464, 846
BsaJI	CCNNGG	4 cut(s)	174, 347, 510, 585
BsaWI	WCCGGW	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	4 cut(s)	336, 623, 716, 775
Bse1I	ACTGG	1 cut(s)	710
Bse8I	GATNNNNATC	2 cut(s)	75, 394
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	4 cut(s)	174, 347, 510, 585
BseGI	GGATG	1 cut(s)	771
BseJI	GATNNNNATC	2 cut(s)	75, 394
BseLI	CCNNNNNNNGG	4 cut(s)	336, 623, 716, 775
BseNI	ACTGG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	298
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	175, 184
BseYI	CCCAGC	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	587
Bsh1285I	CGRYCG	2 cut(s)	279, 312
BshFI	GGCC	3 cut(s)	282, 311, 658
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	2 cut(s)	279, 312
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	4 cut(s)	41, 291, 308, 612
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	4 cut(s)	336, 623, 716, 775
BsmAI	GTCTC	3 cut(s)	223, 464, 846
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	800
BsnI	GGCC	3 cut(s)	282, 311, 658
Bso31I	GGTCTC	2 cut(s)	464, 846
Bsp1286I	GDGCHC	3 cut(s)	252, 298, 724
Bsp143I	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
Bsp19I	CCATGG	2 cut(s)	347, 510
BspACI	CCGC	5 cut(s)	80, 275, 330, 585, 587
BspANI	GGCC	3 cut(s)	282, 311, 658
BspFNI	CGCG	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	5 cut(s)	6, 360, 448, 583, 721
BspPI	GGATC	4 cut(s)	397, 472, 578, 637
BspT107I	GGYRCC	1 cut(s)	446
BspTNI	GGTCTC	2 cut(s)	464, 846
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	4 cut(s)	174, 347, 510, 585
BssMI	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
BssT1I	CCWWGG	2 cut(s)	347, 510
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	262, 423
BstC8I	GCNNGC	3 cut(s)	181, 202, 660
BstDSI	CCRYGG	4 cut(s)	174, 347, 510, 585
BstF5I	GGATG	1 cut(s)	771
BstFNI	CGCG	1 cut(s)	587
BstKTI	GATC	8 cut(s)	16, 73, 270, 392, 467, 486, 573, 632
BstMAI	GTCTC	3 cut(s)	223, 464, 846
BstMBI	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
BstMCI	CGRYCG	2 cut(s)	279, 312
BstMWI	GCNNNNNNNGC	8 cut(s)	185, 194, 197, 239, 329, 383, 485, 572
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	3 cut(s)	39, 306, 774
BstSFI	CTRYAG	2 cut(s)	552, 742
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	2 cut(s)	175, 184
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	282, 311, 658
BtgI	CCRYGG	4 cut(s)	174, 347, 510, 585
BtgZI	GCGATG	1 cut(s)	505
BtsCI	GGATG	1 cut(s)	771
BtsIMutI	CAGTG	1 cut(s)	717
Cac8I	GCNNGC	3 cut(s)	181, 202, 660
CciI	TCATGA	1 cut(s)	498
Cfr13I	GGNCC	5 cut(s)	358, 614, 656, 707, 738
Cfr42I	CCGCGG	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	6 cut(s)	116, 301, 348, 499, 511, 735
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	8 cut(s)	15, 72, 269, 391, 466, 485, 572, 631
DpnII	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
EaeI	YGGCCR	2 cut(s)	280, 309
EagI	CGGCCG	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	347, 510
Eco24I	GRGCYC	2 cut(s)	252, 724
Eco31I	GGTCTC	2 cut(s)	464, 846
Eco47I	GGWCC	4 cut(s)	358, 614, 707, 738
Eco52I	CGGCCG	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	832
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	347, 510
EcoT38I	GRGCYC	2 cut(s)	252, 724
ErhI	CCWWGG	2 cut(s)	347, 510
FaeI	CATG	6 cut(s)	119, 304, 351, 502, 514, 738
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	6 cut(s)	115, 300, 347, 498, 510, 734
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	2 cut(s)	13, 70
Fnu4HI	GCNGC	3 cut(s)	189, 198, 330
FokI	GGATG	1 cut(s)	758
FriOI	GRGCYC	2 cut(s)	252, 724
Fsp4HI	GCNGC	3 cut(s)	189, 198, 330
FspBI	CTAG	4 cut(s)	383, 443, 563, 669
GluI	GCNGC	3 cut(s)	189, 198, 330
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	282, 311, 658
HapII	CCGG	4 cut(s)	41, 291, 308, 612
Hin1II	CATG	6 cut(s)	119, 304, 351, 502, 514, 738
HindIII	AAGCTT	2 cut(s)	224, 477
HinfI	GANTC	2 cut(s)	816, 863
HpaII	CCGG	4 cut(s)	41, 291, 308, 612
HphI	GGTGA	3 cut(s)	78, 447, 777
Hpy166II	GTNNAC	2 cut(s)	296, 408
Hpy188I	TCNGA	2 cut(s)	469, 851
Hpy188III	TCNNGA	5 cut(s)	29, 462, 499, 820, 860
Hpy8I	GTNNAC	2 cut(s)	296, 408
Hpy99I	CGWCG	2 cut(s)	209, 816
HpyAV	CCTTC	3 cut(s)	468, 818, 856
HpyCH4III	ACNGT	2 cut(s)	262, 423
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	7 cut(s)	140, 242, 296, 371, 427, 594, 674
HpyF10VI	GCNNNNNNNGC	8 cut(s)	185, 194, 197, 239, 329, 383, 485, 572
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	6 cut(s)	119, 304, 351, 502, 514, 738
Ksp22I	TGATCA	2 cut(s)	13, 70
KspI	CCGCGG	1 cut(s)	588
Kzo9I	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
LmnI	GCTCC	4 cut(s)	10, 230, 587, 719
Lsp1109I	GCAGC	2 cut(s)	175, 184
MaeI	CTAG	4 cut(s)	383, 443, 563, 669
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	84, 313
MalI	GATC	8 cut(s)	15, 72, 269, 391, 466, 485, 572, 631
MboI	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
MfeI	CAATTG	1 cut(s)	9
MhlI	GDGCHC	3 cut(s)	252, 298, 724
MluCI	AATT	4 cut(s)	9, 363, 432, 603
MmeI	TCCRAC	1 cut(s)	685
MnlI	CCTC	7 cut(s)	34, 58, 239, 412, 535, 802, 867
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	4 cut(s)	41, 291, 308, 612
MspR9I	CCNGG	3 cut(s)	41, 308, 776
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	8 cut(s)	185, 194, 197, 239, 329, 383, 485, 572
NciI	CCSGG	2 cut(s)	41, 308
NcoI	CCATGG	2 cut(s)	347, 510
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
NlaIII	CATG	6 cut(s)	119, 304, 351, 502, 514, 738
NlaIV	GGNNCC	5 cut(s)	6, 360, 448, 583, 721
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	2 cut(s)	84, 313
PagI	TCATGA	1 cut(s)	498
PctI	GAATGC	1 cut(s)	800
PfeI	GAWTC	2 cut(s)	816, 863
PkrI	GCNGC	3 cut(s)	190, 199, 331
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	5 cut(s)	6, 360, 448, 583, 721
PspPI	GGNCC	5 cut(s)	358, 614, 656, 707, 738
PspPPI	RGGWCCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	260
SacII	CCGCGG	1 cut(s)	588
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	189, 198, 330
Sau3AI	GATC	8 cut(s)	13, 70, 267, 389, 464, 483, 570, 629
Sau96I	GGNCC	5 cut(s)	358, 614, 656, 707, 738
ScrFI	CCNGG	3 cut(s)	41, 308, 776
SduI	GDGCHC	3 cut(s)	252, 298, 724
SfcI	CTRYAG	2 cut(s)	552, 742
Sfr303I	CCGCGG	1 cut(s)	588
SgrBI	CCGCGG	1 cut(s)	588
SinI	GGWCC	4 cut(s)	358, 614, 707, 738
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	9, 363, 432, 603
SsiI	CCGC	5 cut(s)	80, 275, 330, 585, 587
SspMI	CTAG	4 cut(s)	383, 443, 563, 669
StyD4I	CCNGG	3 cut(s)	39, 306, 774
StyI	CCWWGG	2 cut(s)	347, 510
TaaI	ACNGT	2 cut(s)	262, 423
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	814
TasI	AATT	4 cut(s)	9, 363, 432, 603
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	816, 863
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	2 cut(s)	84, 313
TseI	GCWGC	2 cut(s)	188, 197
Tsp45I	GTSAC	2 cut(s)	84, 313
TspDTI	ATGAA	5 cut(s)	317, 508, 650, 723, 739
TspGWI	ACGGA	1 cut(s)	849
TspRI	CASTG	1 cut(s)	717
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	4 cut(s)	358, 614, 707, 738
XspI	CTAG	4 cut(s)	383, 443, 563, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.