Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

83821836 .. 83822966

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG616300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCGACAAAAGTGCCTACAGAACACAGAAATGACACAAACGAGTTAGACTTGGCGGCAAACCCAAAATCCCAAAGTTCAATATCAGTATTTGAACGACATTACCCTCCTGGCTTTTTGAAAAAGGTGGTGGCAGAGACTATAGCAACGTTTCTGTTGGTGTTTGTGACATGTGGTTCAGCTGCTCTTGCAGCGAGCGATGAACACAAGGTCTCAAAGCTTGGAGCTTCCATAGTTGGGGGGCTCATAGTAACGGCCATGATCTATGCTGTTGGGCACATCTCCGGTGCACACATGAACCCGGCTGTCACTCTAGCCTTTGCTGCCGTCAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGCAGCACAGCTAACAGGATCAGTAGCTGCCTCTTTTACTCTGTCTATACTATTGCATCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGATTTTCAAGCTCTAATCACAGAGATAGTCATGACATTTTCCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTGTACAGCATCTTTCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

188

Amino Acids

19.87

Weight (kDa)

7.96

Isoelectric Point (pI)

30.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	38 - 184	2.5e-34	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	56
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	2 cut(s)	391, 466
AcoI	YGGCCR	1 cut(s)	255
AfaI	GTAC	2 cut(s)	354, 549
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	81, 95, 121, 470
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	7 cut(s)	182, 220, 227, 376, 392, 473, 545
AluI	AGCT	7 cut(s)	182, 220, 227, 376, 392, 473, 545
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	131, 217
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	391, 466
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	1 cut(s)	255
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	6 cut(s)	182, 191, 323, 365, 368, 392
Asp718I	GGTACC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	441
BaeGI	GKGCMC	2 cut(s)	279, 292
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	6 cut(s)	169, 203, 310, 377, 379, 380
BceAI	ACGGC	3 cut(s)	270, 311, 509
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	131, 217
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	2 cut(s)	18, 141
BisI	GCNGC	7 cut(s)	57, 183, 192, 324, 366, 369, 393
BlsI	GCNGC	7 cut(s)	58, 184, 193, 325, 367, 370, 394
Bme1390I	CCNGG	2 cut(s)	111, 302
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	111, 302
BmsI	GCATC	2 cut(s)	430, 562
BpuMI	CCSGG	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseSI	GKGCMC	2 cut(s)	279, 292
BseXI	GCAGC	6 cut(s)	169, 203, 310, 377, 379, 380
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	285, 302
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	131, 217
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	3 cut(s)	246, 279, 292
Bsp1407I	TGTACA	1 cut(s)	547
Bsp143I	GATC	3 cut(s)	261, 383, 458
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	257
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	2 cut(s)	391, 466
BspT107I	GGYRCC	1 cut(s)	352
BspTNI	GGTCTC	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	3 cut(s)	261, 383, 458
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	111
BstAUI	TGTACA	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	196
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	3 cut(s)	264, 386, 461
BstMAI	GTCTC	2 cut(s)	131, 217
BstMBI	GATC	3 cut(s)	261, 383, 458
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 191, 323
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	174, 437
BstSCI	CCNGG	2 cut(s)	109, 300
BstSFI	CTRYAG	2 cut(s)	18, 141
BstSLI	GKGCMC	2 cut(s)	279, 292
BstV1I	GCAGC	6 cut(s)	169, 203, 310, 377, 379, 380
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	421
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	353, 548
CviAII	CATG	7 cut(s)	171, 259, 295, 342, 434, 493, 505
CviQI	GTAC	2 cut(s)	353, 548
DpnI	GATC	3 cut(s)	263, 385, 460
DpnII	GATC	3 cut(s)	261, 383, 458
EaeI	YGGCCR	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	7 cut(s)	174, 262, 298, 345, 437, 496, 508
FatI	CATG	7 cut(s)	170, 258, 294, 341, 433, 492, 504
Fnu4HI	GCNGC	7 cut(s)	57, 183, 192, 324, 366, 369, 393
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	7 cut(s)	57, 183, 192, 324, 366, 369, 393
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	7 cut(s)	57, 183, 192, 324, 366, 369, 393
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	285, 302
Hin1II	CATG	7 cut(s)	174, 262, 298, 345, 437, 496, 508
HindIII	AAGCTT	1 cut(s)	218
HpaII	CCGG	2 cut(s)	285, 302
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	2 cut(s)	456, 493
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	1 cut(s)	462
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	4 cut(s)	191, 290, 365, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 191, 323
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	7 cut(s)	174, 262, 298, 345, 437, 496, 508
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	261, 383, 458
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	8 cut(s)	96, 123, 298, 315, 316, 335, 366, 441
Lsp1109I	GCAGC	6 cut(s)	169, 203, 310, 377, 379, 380
LweI	GCATC	2 cut(s)	430, 562
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	166, 250, 307
MalI	GATC	3 cut(s)	263, 385, 460
MboI	GATC	3 cut(s)	261, 383, 458
MhlI	GDGCHC	3 cut(s)	246, 279, 292
MluCI	AATT	1 cut(s)	357
MnlI	CCTC	2 cut(s)	117, 406
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	285, 302
MspR9I	CCNGG	2 cut(s)	111, 302
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	188, 191, 323
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	3 cut(s)	261, 383, 458
NlaIII	CATG	7 cut(s)	174, 262, 298, 345, 437, 496, 508
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	2 cut(s)	166, 307
NspI	RCATGY	2 cut(s)	174, 437
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	170
PkrI	GCNGC	7 cut(s)	58, 184, 193, 325, 367, 370, 394
PscI	ACATGT	1 cut(s)	170
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	354
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	354, 549
RsaNI	GTAC	2 cut(s)	353, 548
RseI	CAYNNNNRTG	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	7 cut(s)	57, 183, 192, 324, 366, 369, 393
Sau3AI	GATC	3 cut(s)	261, 383, 458
ScrFI	CCNGG	2 cut(s)	111, 302
SduI	GDGCHC	3 cut(s)	246, 279, 292
SfaNI	GCATC	2 cut(s)	430, 562
SfcI	CTRYAG	2 cut(s)	18, 141
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	357
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	109, 300
StyI	CCWWGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	152
TasI	AATT	1 cut(s)	357
TatI	WGTACW	1 cut(s)	547
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	166, 307
TseI	GCWGC	6 cut(s)	182, 191, 323, 365, 368, 392
Tsp45I	GTSAC	2 cut(s)	166, 307
TspDTI	ATGAA	3 cut(s)	216, 311, 502
VneI	GTGCAC	1 cut(s)	288
XceI	RCATGY	2 cut(s)	174, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.