Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

5777919 .. 5779987

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCGACAAAAGAGCCTACAGAACTCAGAAATGACACAAACGAGTTGGACTTGGCGGCAAACCCAAAATCCCAAAGTTCAATATCAGTATTTGAACAACATTACCCTCCAGGCTTTTTGAAAAAGGTGGTGGCAGAGATTATAGCAACGTTTCTGTTGGTGTTTGTGACATGTGGTTCAGCTGCTCTTTCAGCGAGCGATGAACACAAGGTCTCAAAGCTTGGAGCTTCCATAGTTGGGGGTCTCATAGTAACGGCCATGATATATGCTGTTGGGCACATCTCCGGTGCACACATGAACCCGGCTGTCACTCTAGCTTTTGCTGCAGTCAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGCAGCACAGCTAACAGGATCAGTATCTGCCTCTTTTACTCTGTCTATACTATTGCATCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGATTTTCAAGCTCTAATCACAGAGATAGTCATGACATTCTCCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTATAGGAGAGCTAGCAGGAATAGCAGTTGGCTCTGCAGTATGCATAGCATCGATTTTTGCTGGACCAATATCAGGTGGATCCATGAACCCAGCCAGAACATTAGGACCAGCACTTGCTAGTGCATCCTACAAGGGAATTTGGGTCTATGTGGTAGGACCTGTGATAGGAACCCTACTAGGGGCATGGACCTACAACTTCATTCGGGTCACTGACAAGCCGGTTCAGGCCATACCACCCCACTCATTTTCATTCAAGCTAGGGAGAATGAAGAGCGAATATGATCGGCAGGTTGTTACCTGCACAGACCCTCTGGATTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

289

Amino Acids

30.41

Weight (kDa)

7.77

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	38 - 246	5.9e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	823, 851
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	1 cut(s)	56
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	4 cut(s)	391, 466, 618, 631
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	681
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	5 cut(s)	237, 617, 710, 723, 724
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	81, 95, 121, 470, 799
AjnI	CCWGG	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	217, 248
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	4 cut(s)	391, 466, 618, 631
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	255, 771
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	182, 323, 365, 368
ApoI	RAATTY	1 cut(s)	681
Asp718I	GGTACC	1 cut(s)	352
AspS9I	GGNCC	4 cut(s)	608, 650, 701, 732
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	441
AsuNHI	GCTAGC	1 cut(s)	556
AvaII	GGWCC	4 cut(s)	608, 650, 701, 732
BaeGI	GKGCMC	2 cut(s)	279, 292
BamHI	GGATCC	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	4 cut(s)	169, 310, 377, 380
BceAI	ACGGC	2 cut(s)	270, 509
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	217, 248
BfaI	CTAG	5 cut(s)	314, 557, 663, 722, 803
BfmI	CTRYAG	4 cut(s)	18, 324, 546, 579
BfuAI	ACCTGC	2 cut(s)	823, 851
BisI	GCNGC	5 cut(s)	57, 183, 324, 366, 369
BlsI	GCNGC	5 cut(s)	58, 184, 325, 367, 370
Bme1390I	CCNGG	2 cut(s)	111, 302
Bme18I	GGWCC	4 cut(s)	608, 650, 701, 732
BmgT120I	GGNCC	4 cut(s)	608, 650, 701, 732
BmiI	GGNNCC	3 cut(s)	354, 625, 715
BmrFI	CCNGG	2 cut(s)	111, 302
BmsI	GCATC	3 cut(s)	430, 602, 677
BmtI	GCTAGC	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	596
BsaBI	GATNNNNATC	2 cut(s)	388, 512
BsaI	GGTCTC	2 cut(s)	217, 248
BsaJI	CCNNGG	1 cut(s)	341
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	5 cut(s)	237, 617, 710, 723, 724
Bse118I	RCCGGY	1 cut(s)	763
Bse8I	GATNNNNATC	2 cut(s)	388, 512
BseBI	CCWGG	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	2 cut(s)	421, 668
BseJI	GATNNNNATC	2 cut(s)	388, 512
BseLI	CCNNNNNNNGG	5 cut(s)	237, 617, 710, 723, 724
BseMII	CTCAG	1 cut(s)	40
BseSI	GKGCMC	2 cut(s)	279, 292
BseXI	GCAGC	4 cut(s)	169, 310, 377, 380
BseYI	CCCAGC	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	829
BshFI	GGCC	2 cut(s)	257, 773
BshNI	GGYRCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	285, 302, 764
BslI	CCNNNNNNNGG	5 cut(s)	237, 617, 710, 723, 724
BsmAI	GTCTC	2 cut(s)	217, 248
BsnI	GGCC	2 cut(s)	257, 773
Bso31I	GGTCTC	2 cut(s)	217, 248
Bsp1286I	GDGCHC	2 cut(s)	279, 292
Bsp143I	GATC	4 cut(s)	383, 458, 623, 826
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	257, 773
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	354, 625, 715
BspMAI	CTGCAG	2 cut(s)	328, 583
BspMI	ACCTGC	2 cut(s)	823, 851
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	4 cut(s)	391, 466, 618, 631
BspQI	GCTCTTC	1 cut(s)	809
BspT107I	GGYRCC	1 cut(s)	352
BspTNI	GGTCTC	2 cut(s)	217, 248
BsrFI	RCCGGY	1 cut(s)	763
BssAI	RCCGGY	1 cut(s)	763
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	4 cut(s)	383, 458, 623, 826
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	196, 558
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	341
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	421, 668
BstKTI	GATC	4 cut(s)	386, 461, 626, 829
BstMAI	GTCTC	2 cut(s)	217, 248
BstMBI	GATC	4 cut(s)	383, 458, 623, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 323, 566
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	2 cut(s)	174, 437
BstSCI	CCNGG	2 cut(s)	109, 300
BstSFI	CTRYAG	4 cut(s)	18, 324, 546, 579
BstSLI	GKGCMC	2 cut(s)	279, 292
BstV1I	GCAGC	4 cut(s)	169, 310, 377, 380
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
Bsu15I	ATCGAT	1 cut(s)	596
BsuRI	GGCC	2 cut(s)	257, 773
BsuTUI	ATCGAT	1 cut(s)	596
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	421, 668
BtsIMutI	CAGTG	1 cut(s)	753
BveI	ACCTGC	2 cut(s)	823, 851
Cac8I	GCNNGC	2 cut(s)	196, 558
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	763
Cfr13I	GGNCC	4 cut(s)	608, 650, 701, 732
ClaI	ATCGAT	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	9 cut(s)	171, 259, 295, 342, 434, 493, 505, 628, 729
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	4 cut(s)	385, 460, 625, 828
DpnII	GATC	4 cut(s)	383, 458, 623, 826
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	809
EarI	CTCTTC	1 cut(s)	809
Eco130I	CCWWGG	1 cut(s)	341
Eco31I	GGTCTC	2 cut(s)	217, 248
Eco47I	GGWCC	4 cut(s)	608, 650, 701, 732
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	341
FaeI	CATG	9 cut(s)	174, 262, 298, 345, 437, 496, 508, 631, 732
FatI	CATG	9 cut(s)	170, 258, 294, 341, 433, 492, 504, 627, 728
Fnu4HI	GCNGC	5 cut(s)	57, 183, 324, 366, 369
FokI	GGATG	2 cut(s)	408, 655
Fsp4HI	GCNGC	5 cut(s)	57, 183, 324, 366, 369
FspBI	CTAG	5 cut(s)	314, 557, 663, 722, 803
GluI	GCNGC	5 cut(s)	57, 183, 324, 366, 369
GsaI	CCCAGC	1 cut(s)	638
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	257, 773
HapII	CCGG	3 cut(s)	285, 302, 764
Hin1II	CATG	9 cut(s)	174, 262, 298, 345, 437, 496, 508, 631, 732
HindIII	AAGCTT	1 cut(s)	218
HpaII	CCGG	3 cut(s)	285, 302, 764
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	29, 463
Hpy188III	TCNNGA	3 cut(s)	456, 493, 857
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	1 cut(s)	462
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	8 cut(s)	290, 326, 365, 421, 581, 588, 668, 846
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 323, 566
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	9 cut(s)	174, 262, 298, 345, 437, 496, 508, 631, 732
KpnI	GGTACC	1 cut(s)	356
Kzo9I	GATC	4 cut(s)	383, 458, 623, 826
LguI	GCTCTTC	1 cut(s)	809
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	4 cut(s)	169, 310, 377, 380
LweI	GCATC	3 cut(s)	430, 602, 677
MaeI	CTAG	5 cut(s)	314, 557, 663, 722, 803
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	5 cut(s)	166, 250, 307, 751, 838
MalI	GATC	4 cut(s)	385, 460, 625, 828
MboI	GATC	4 cut(s)	383, 458, 623, 826
MboII	GAAGA	1 cut(s)	826
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	279, 292
MluCI	AATT	2 cut(s)	357, 681
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	117, 406, 864
Mph1103I	ATGCAT	1 cut(s)	590
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	3 cut(s)	285, 302, 764
MspR9I	CCNGG	2 cut(s)	111, 302
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	191, 323, 566
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	4 cut(s)	383, 458, 623, 826
NheI	GCTAGC	1 cut(s)	556
NlaIII	CATG	9 cut(s)	174, 262, 298, 345, 437, 496, 508, 631, 732
NlaIV	GGNNCC	3 cut(s)	354, 625, 715
NmuCI	GTSAC	3 cut(s)	166, 307, 751
NsiI	ATGCAT	1 cut(s)	590
NspI	RCATGY	2 cut(s)	174, 437
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	809
PkrI	GCNGC	5 cut(s)	58, 184, 325, 367, 370
PpuMI	RGGWCCY	1 cut(s)	701
PscI	ACATGT	1 cut(s)	170
Psp1406I	AACGTT	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	354, 625, 715
PspPI	GGNCC	4 cut(s)	608, 650, 701, 732
PspPPI	RGGWCCY	1 cut(s)	701
PstI	CTGCAG	2 cut(s)	328, 583
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	623
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	809
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	5 cut(s)	57, 183, 324, 366, 369
Sau3AI	GATC	4 cut(s)	383, 458, 623, 826
Sau96I	GGNCC	4 cut(s)	608, 650, 701, 732
ScrFI	CCNGG	2 cut(s)	111, 302
SduI	GDGCHC	2 cut(s)	279, 292
SfaNI	GCATC	3 cut(s)	430, 602, 677
SfcI	CTRYAG	4 cut(s)	18, 324, 546, 579
SinI	GGWCC	4 cut(s)	608, 650, 701, 732
Sse9I	AATT	2 cut(s)	357, 681
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	5 cut(s)	314, 557, 663, 722, 803
StyD4I	CCNGG	2 cut(s)	109, 300
StyI	CCWWGG	1 cut(s)	341
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	596
TasI	AATT	2 cut(s)	357, 681
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	3 cut(s)	166, 307, 751
TseI	GCWGC	4 cut(s)	182, 323, 365, 368
Tsp45I	GTSAC	3 cut(s)	166, 307, 751
TspDTI	ATGAA	7 cut(s)	216, 311, 502, 644, 733, 783, 827
TspRI	CASTG	1 cut(s)	760
VneI	GTGCAC	1 cut(s)	288
VpaK11BI	GGWCC	4 cut(s)	608, 650, 701, 732
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	1 cut(s)	681
XceI	RCATGY	2 cut(s)	174, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	5 cut(s)	314, 557, 663, 722, 803
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.