Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

77580375 .. 77581972

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGACAAAAGTGCCTACAGAACACAGAAATGACACAAACGAGTTAGACTTGGCGGCAAACCCAAAATCCCAAAGTTCAATATCAGTATTTGAACGACATTACCCTCCTGGCTTTTTGAAAAAGGTAAGTCTCAAAGCTTGGAGCTTCCAAGTTGGGGGGCTCATAGTAACGGCCATGATCTATGCTGTTGGGCACATCTCCGGTGCACACATGAACCCGGCTGTCACTCTAGCTTTTGCTGCCGTCAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGCAGCACAGCTAACAGGATCAGTATCTGCCTCTTTTACTCTGTCTATACTATTGCATCCCAATAAGCATGTGGGAACTACATCTCCTTCTGGATCAGATTTTCAAGCTCTAATCACAGAGATAGTCATGACATTTTCCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTATAGGAGAGCTAGCGGGTATTGCAGTTGGCTCTGCAGTATGCATAACATCAATTTTTGCTGGACCAATATCAGGTGGATCCATGAACCCAGCCAGAACATTAGGACCAGCACTTGCTAGTGCATACTACAAGGGAATTTGGGTCTATGTGGTAGGACCTGTGATAGGAACCCTACTAGGGGCATGGACCTACAACTTCATTCGGGTCACTGACAAGCCGGTTCAGGCCATACCACCGCACTCATTTTCATTCAAGCTACGGAGAATGAAGATCGAAAATGATCAGCAGGTTGTTACCTGCACAGACCCTCTGGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

262

Amino Acids

27.98

Weight (kDa)

9.23

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	54 - 219	6.9e-48	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	742, 770
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AciI	CCGC	3 cut(s)	56, 479, 701
AclWI	GGATC	4 cut(s)	310, 385, 537, 550
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	600
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	5 cut(s)	157, 536, 629, 642, 643
AgsI	TTSAA	5 cut(s)	81, 95, 121, 389, 718
AjnI	CCWGG	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	352, 384
AluBI	AGCT	9 cut(s)	140, 147, 236, 295, 392, 464, 475, 721, 785
AluI	AGCT	9 cut(s)	140, 147, 236, 295, 392, 464, 475, 721, 785
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	207
AlwI	GGATC	4 cut(s)	310, 385, 537, 550
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	174, 690
ApaLI	GTGCAC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	242, 284, 287
ApoI	RAATTY	1 cut(s)	600
Asp718I	GGTACC	1 cut(s)	271
AspS9I	GGNCC	4 cut(s)	527, 569, 620, 651
AsuC2I	CCSGG	1 cut(s)	221
AsuNHI	GCTAGC	1 cut(s)	475
AvaII	GGWCC	4 cut(s)	527, 569, 620, 651
BaeGI	GKGCMC	2 cut(s)	198, 211
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	229, 296, 299
BceAI	ACGGC	3 cut(s)	189, 230, 428
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	4 cut(s)	233, 476, 582, 641
BfmI	CTRYAG	3 cut(s)	18, 465, 498
BfuAI	ACCTGC	2 cut(s)	742, 770
BisI	GCNGC	4 cut(s)	57, 243, 285, 288
BlsI	GCNGC	4 cut(s)	58, 244, 286, 289
Bme1390I	CCNGG	2 cut(s)	111, 221
Bme18I	GGWCC	4 cut(s)	527, 569, 620, 651
BmgT120I	GGNCC	4 cut(s)	527, 569, 620, 651
BmiI	GGNNCC	3 cut(s)	273, 544, 634
BmrFI	CCNGG	2 cut(s)	111, 221
BmsI	GCATC	1 cut(s)	349
BmtI	GCTAGC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	221
BsaBI	GATNNNNATC	2 cut(s)	307, 431
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	5 cut(s)	157, 536, 629, 642, 643
Bse118I	RCCGGY	1 cut(s)	682
Bse8I	GATNNNNATC	2 cut(s)	307, 431
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	2 cut(s)	307, 431
BseLI	CCNNNNNNNGG	5 cut(s)	157, 536, 629, 642, 643
BseSI	GKGCMC	2 cut(s)	198, 211
BseXI	GCAGC	3 cut(s)	229, 296, 299
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	176, 692
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	204, 221, 683
BslI	CCNNNNNNNGG	5 cut(s)	157, 536, 629, 642, 643
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	176, 692
Bsp1286I	GDGCHC	3 cut(s)	165, 198, 211
Bsp143I	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	3 cut(s)	56, 479, 701
BspANI	GGCC	2 cut(s)	176, 692
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	273, 544, 634
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	2 cut(s)	742, 770
BspOI	GCTAGC	1 cut(s)	479
BspPI	GGATC	4 cut(s)	310, 385, 537, 550
BspT107I	GGYRCC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	6 cut(s)	183, 305, 380, 545, 738, 748
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 485
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	2 cut(s)	109, 219
BstSFI	CTRYAG	3 cut(s)	18, 465, 498
BstSLI	GKGCMC	2 cut(s)	198, 211
BstV1I	GCAGC	3 cut(s)	229, 296, 299
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	176, 692
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	672
BveI	ACCTGC	2 cut(s)	742, 770
Cac8I	GCNNGC	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	411
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	4 cut(s)	527, 569, 620, 651
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	8 cut(s)	178, 214, 261, 353, 412, 424, 547, 648
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	6 cut(s)	182, 304, 379, 544, 737, 747
DpnII	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	165
Eco47I	GGWCC	4 cut(s)	527, 569, 620, 651
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	8 cut(s)	181, 217, 264, 356, 415, 427, 550, 651
FatI	CATG	8 cut(s)	177, 213, 260, 352, 411, 423, 546, 647
FauI	CCCGC	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	4 cut(s)	57, 243, 285, 288
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	4 cut(s)	57, 243, 285, 288
FspBI	CTAG	4 cut(s)	233, 476, 582, 641
GluI	GCNGC	4 cut(s)	57, 243, 285, 288
GsaI	CCCAGC	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	176, 692
HapII	CCGG	3 cut(s)	204, 221, 683
Hin1II	CATG	8 cut(s)	181, 217, 264, 356, 415, 427, 550, 651
HindIII	AAGCTT	1 cut(s)	138
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	3 cut(s)	204, 221, 683
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	375, 412, 776
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	381
HpyCH4V	TGCA	8 cut(s)	209, 284, 340, 488, 500, 507, 587, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 485
Hsp92II	CATG	8 cut(s)	181, 217, 264, 356, 415, 427, 550, 651
KpnI	GGTACC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	3 cut(s)	229, 296, 299
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	4 cut(s)	233, 476, 582, 641
MaeIII	GTNAC	4 cut(s)	169, 226, 670, 757
MalI	GATC	6 cut(s)	182, 304, 379, 544, 737, 747
MboI	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
MboII	GAAGA	1 cut(s)	745
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	3 cut(s)	165, 198, 211
MluCI	AATT	3 cut(s)	276, 516, 600
MnlI	CCTC	3 cut(s)	117, 325, 783
Mph1103I	ATGCAT	1 cut(s)	509
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	3 cut(s)	204, 221, 683
MspR9I	CCNGG	2 cut(s)	111, 221
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	242, 485
NciI	CCSGG	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
NheI	GCTAGC	1 cut(s)	475
NlaIII	CATG	8 cut(s)	181, 217, 264, 356, 415, 427, 550, 651
NlaIV	GGNNCC	3 cut(s)	273, 544, 634
NmuCI	GTSAC	2 cut(s)	226, 670
NsiI	ATGCAT	1 cut(s)	509
NspI	RCATGY	1 cut(s)	356
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	779
PkrI	GCNGC	4 cut(s)	58, 244, 286, 289
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	273, 544, 634
PspPI	GGNCC	4 cut(s)	527, 569, 620, 651
PspPPI	RGGWCCY	1 cut(s)	620
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	4 cut(s)	57, 243, 285, 288
Sau3AI	GATC	6 cut(s)	180, 302, 377, 542, 735, 745
Sau96I	GGNCC	4 cut(s)	527, 569, 620, 651
ScrFI	CCNGG	2 cut(s)	111, 221
SduI	GDGCHC	3 cut(s)	165, 198, 211
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	3 cut(s)	18, 465, 498
SinI	GGWCC	4 cut(s)	527, 569, 620, 651
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	276, 516, 600
SsiI	CCGC	3 cut(s)	56, 479, 701
SspMI	CTAG	4 cut(s)	233, 476, 582, 641
StyD4I	CCNGG	2 cut(s)	109, 219
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	1 cut(s)	738
TasI	AATT	3 cut(s)	276, 516, 600
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	779
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	2 cut(s)	226, 670
TseI	GCWGC	3 cut(s)	242, 284, 287
Tsp45I	GTSAC	2 cut(s)	226, 670
TspDTI	ATGAA	6 cut(s)	230, 421, 563, 652, 702, 746
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	1 cut(s)	679
VneI	GTGCAC	1 cut(s)	207
VpaK11BI	GGWCC	4 cut(s)	527, 569, 620, 651
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	4 cut(s)	233, 476, 582, 641
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.