Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Forward (+)

82769938 .. 82775793

Gene Structure 5856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53607

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGATAGCTACCTTTCTGCTGGTGTTTGTAACATGTGGTTCAGCTGCTCTTTCAGCGAGTGATGAACGCAAAGTCTCAAAGCTTGGAGCTTCCATGACCGGAGGGCTTATAGTGACGGTGATGATCTACGCAGTTGGGCACATATCTGGGGCACACATGAACCCGGCCGTCACTCTAGCTTTTGCTGCCTTTAGACATTTTCCATGGAAACAGGTGCCAATTTATGCGGTAGCACAACTAACAGGATCAATATCTGCCTCATTTACTCTGTCTCTACTATTGCACCCTATTAAGCACGTGGGCACTACATCACCTTCTGGATCAGAGCTTCGAGCTGTAGTCACAGAGATAATCGTGACATTTTCTAATTTCTATGATATAGGAGAGCTAGCAGGTATAGCCGTTGGGTCTGCGGTATGCATAACATCCATCTTTGCTGGACCAATATCAGGTGGATCTATGAATCCAGCAAGGACAATAGGACCAGCACTTGCTAGTTCATATTACAATGGGATTTGGATCTACATGGTAGGACCAGTGATCGGAACACTACTAGGGGCATGGGCTTACAGCTTCATTCGGGTCAGTGACAAGCCGGTTCAGGCAATACCACGGCGTTCACTTTCACACCAGCTTCGTCAAGTGGTGGCAGAGACTATAGCAACGTTTCTGTTGGTGTTTGTGACATGTGGTTCAGCTGCTCTTGCAGCGAGCGATGAACACAAGGTCTCAAAGCTTGGAGCTTCCATAGTTGGGGGGCTCATAGTAACGGCCATGATCTATGCTGTTGGGCACATCTCCGGTGCACACATGAACCCGGCTGTCACTCTAGCCTTTGCTGCCGTCAGGCATTTTCCATGGAAACAGGTACCAATTTATGCAGCAGCACAGCTAACAGGATCAGTAGCTGCCTCTTTTACTCTGTCTATACTATTGCATCCCATTAAGCATGTGGGAACTACATCACCTTCTGGATCAGATTTTCAAGCTCTAATCACAGAGATAGTCATGACATTTTCCATGATGTTCATCACTTCTGCCGTCGCCACAGATACTAAAGCTATAGGAGAGCTAGCAGGTATCGCAGTTGGCTCTGCAGTATGCATAACATCAATTTTTGCTGGACCAATATCAGGTGGATCCATGAACCCAGCCAGAACATTAGGACCAGCACTTGCTAGTGCATACTACAAGGGAATTTGGGTCTATGTGGTAGGACCTGTGATAGGAACCCTACTAGGGGCATGGACCTACAACTTCATTCGGGTCACTGACAAGCCGGTTCAGGGCATACCACCGCACTCATTTTCATTCAAGCTACGGAGAATGAAGATCGAAAATGATCGGCAGGTTGTTACCTGCACAGACCCTCTGGATTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

461

Amino Acids

48.31

Weight (kDa)

9.31

Isoelectric Point (pI)

24.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	2 - 190	8e-43	Major intrinsic protein
MIP	PF00230	210 - 418	1.9e-55	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	383, 1067, 1339, 1367
Acc65I	GGTACC	1 cut(s)	868
AccB1I	GGYRCC	2 cut(s)	214, 868
AciI	CCGC	3 cut(s)	227, 413, 1298
AclI	AACGTT	1 cut(s)	665
AclWI	GGATC	8 cut(s)	253, 328, 463, 527, 907, 982, 1134, 1147
AcoI	YGGCCR	2 cut(s)	165, 771
AcsI	RAATTY	1 cut(s)	1197
AcvI	CACGTG	1 cut(s)	298
AfaI	GTAC	1 cut(s)	870
AfiI	CCNNNNNNNGG	8 cut(s)	449, 542, 753, 1133, 1226, 1239, 1240, 1286
AflIII	ACRYGT	2 cut(s)	32, 686
AgsI	TTSAA	2 cut(s)	986, 1315
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	4 cut(s)	79, 276, 647, 733
Alw44I	GTGCAC	1 cut(s)	804
AlwI	GGATC	8 cut(s)	253, 328, 463, 527, 907, 982, 1134, 1147
AlwNI	CAGNNNCTG	1 cut(s)	908
AoxI	GGCC	2 cut(s)	165, 771
ApaLI	GTGCAC	1 cut(s)	804
ApeKI	GCWGC	8 cut(s)	44, 185, 698, 707, 839, 881, 884, 908
ApoI	RAATTY	1 cut(s)	1197
Asp718I	GGTACC	1 cut(s)	868
AspS9I	GGNCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
AsuC2I	CCSGG	2 cut(s)	164, 818
AsuHPI	GGTGA	3 cut(s)	130, 303, 957
AsuNHI	GCTAGC	2 cut(s)	388, 1072
AvaII	GGWCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
BaeGI	GKGCMC	5 cut(s)	141, 154, 305, 795, 808
BamHI	GGATCC	1 cut(s)	1139
BanI	GGYRCC	2 cut(s)	214, 868
BanII	GRGCYC	1 cut(s)	762
BbrPI	CACGTG	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	8 cut(s)	31, 172, 685, 719, 826, 893, 895, 896
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	6 cut(s)	152, 386, 629, 786, 827, 1025
BcnI	CCSGG	2 cut(s)	164, 818
BcoDI	GTCTC	4 cut(s)	79, 276, 647, 733
BfaI	CTAG	8 cut(s)	176, 389, 495, 554, 830, 1073, 1179, 1238
BfmI	CTRYAG	4 cut(s)	336, 657, 1062, 1095
BfuAI	ACCTGC	4 cut(s)	383, 1067, 1339, 1367
BisI	GCNGC	8 cut(s)	45, 186, 699, 708, 840, 882, 885, 909
BlsI	GCNGC	8 cut(s)	46, 187, 700, 709, 841, 883, 886, 910
Bme1390I	CCNGG	2 cut(s)	164, 818
Bme18I	GGWCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
BmgT120I	GGNCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
BmiI	GGNNCC	4 cut(s)	216, 870, 1141, 1231
BmrFI	CCNGG	2 cut(s)	164, 818
BmsI	GCATC	1 cut(s)	946
BmtI	GCTAGC	2 cut(s)	392, 1076
BpuMI	CCSGG	2 cut(s)	164, 818
BsaAI	YACGTR	1 cut(s)	298
BsaBI	GATNNNNATC	3 cut(s)	250, 518, 1028
BsaI	GGTCTC	1 cut(s)	733
BsaJI	CCNNGG	3 cut(s)	203, 611, 857
BsaWI	WCCGGW	2 cut(s)	98, 800
Bsc4I	CCNNNNNNNGG	8 cut(s)	449, 542, 753, 1133, 1226, 1239, 1240, 1286
Bse118I	RCCGGY	2 cut(s)	595, 1279
Bse1I	ACTGG	1 cut(s)	536
Bse8I	GATNNNNATC	3 cut(s)	250, 518, 1028
BseDI	CCNNGG	3 cut(s)	203, 611, 857
BseGI	GGATG	2 cut(s)	425, 937
BseJI	GATNNNNATC	3 cut(s)	250, 518, 1028
BseLI	CCNNNNNNNGG	8 cut(s)	449, 542, 753, 1133, 1226, 1239, 1240, 1286
BseNI	ACTGG	1 cut(s)	536
BseSI	GKGCMC	5 cut(s)	141, 154, 305, 795, 808
BseX3I	CGGCCG	1 cut(s)	165
BseXI	GCAGC	8 cut(s)	31, 172, 685, 719, 826, 893, 895, 896
BseYI	CCCAGC	1 cut(s)	1150
BsgI	GTGCAG	1 cut(s)	1345
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	167, 773
BshNI	GGYRCC	2 cut(s)	214, 868
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	6 cut(s)	99, 164, 596, 801, 818, 1280
BslI	CCNNNNNNNGG	8 cut(s)	449, 542, 753, 1133, 1226, 1239, 1240, 1286
BsmAI	GTCTC	4 cut(s)	79, 276, 647, 733
BsnI	GGCC	2 cut(s)	167, 773
Bso31I	GGTCTC	1 cut(s)	733
Bsp1286I	GDGCHC	6 cut(s)	141, 154, 305, 762, 795, 808
Bsp19I	CCATGG	2 cut(s)	203, 857
BspACI	CCGC	3 cut(s)	227, 413, 1298
BspANI	GGCC	2 cut(s)	167, 773
BspHI	TCATGA	1 cut(s)	1008
BspLI	GGNNCC	4 cut(s)	216, 870, 1141, 1231
BspMAI	CTGCAG	1 cut(s)	1099
BspMI	ACCTGC	4 cut(s)	383, 1067, 1339, 1367
BspOI	GCTAGC	2 cut(s)	392, 1076
BspPI	GGATC	8 cut(s)	253, 328, 463, 527, 907, 982, 1134, 1147
BspT107I	GGYRCC	2 cut(s)	214, 868
BspTNI	GGTCTC	1 cut(s)	733
BsrFI	RCCGGY	2 cut(s)	595, 1279
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	2 cut(s)	595, 1279
BssECI	CCNNGG	3 cut(s)	203, 611, 857
BssT1I	CCWWGG	2 cut(s)	203, 857
Bst4CI	ACNGT	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	3 cut(s)	390, 712, 1074
BstDSI	CCRYGG	3 cut(s)	203, 611, 857
BstENI	CCTNNNNNAGG	1 cut(s)	1224
BstF5I	GGATG	2 cut(s)	425, 937
BstMAI	GTCTC	4 cut(s)	79, 276, 647, 733
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 185, 398, 704, 707, 839, 1082
BstNSI	RCATGY	3 cut(s)	36, 690, 953
BstSCI	CCNGG	2 cut(s)	162, 816
BstSFI	CTRYAG	4 cut(s)	336, 657, 1062, 1095
BstSLI	GKGCMC	5 cut(s)	141, 154, 305, 795, 808
BstV1I	GCAGC	8 cut(s)	31, 172, 685, 719, 826, 893, 895, 896
BstX2I	RGATCY	3 cut(s)	455, 519, 1139
BstYI	RGATCY	3 cut(s)	455, 519, 1139
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	167, 773
BtgI	CCRYGG	3 cut(s)	203, 611, 857
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	425, 937
BtsIMutI	CAGTG	3 cut(s)	543, 592, 1269
BveI	ACCTGC	4 cut(s)	383, 1067, 1339, 1367
Cac8I	GCNNGC	3 cut(s)	390, 712, 1074
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	1 cut(s)	1008
Cfr10I	RCCGGY	2 cut(s)	595, 1279
Cfr13I	GGNCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
Csp6I	GTAC	1 cut(s)	869
CviQI	GTAC	1 cut(s)	869
EaeI	YGGCCR	2 cut(s)	165, 771
EagI	CGGCCG	1 cut(s)	165
EclXI	CGGCCG	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	203, 857
Eco24I	GRGCYC	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	733
Eco47I	GGWCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
Eco52I	CGGCCG	1 cut(s)	165
Eco72I	CACGTG	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	1224
EcoO109I	RGGNCCY	1 cut(s)	1217
EcoT14I	CCWWGG	2 cut(s)	203, 857
EcoT22I	ATGCAT	2 cut(s)	422, 1106
EcoT38I	GRGCYC	1 cut(s)	762
ErhI	CCWWGG	2 cut(s)	203, 857
Fnu4HI	GCNGC	8 cut(s)	45, 186, 699, 708, 840, 882, 885, 909
FokI	GGATG	2 cut(s)	412, 924
FriOI	GRGCYC	1 cut(s)	762
Fsp4HI	GCNGC	8 cut(s)	45, 186, 699, 708, 840, 882, 885, 909
FspBI	CTAG	8 cut(s)	176, 389, 495, 554, 830, 1073, 1179, 1238
GluI	GCNGC	8 cut(s)	45, 186, 699, 708, 840, 882, 885, 909
GsaI	CCCAGC	1 cut(s)	1154
HaeIII	GGCC	2 cut(s)	167, 773
HapII	CCGG	6 cut(s)	99, 164, 596, 801, 818, 1280
HindIII	AAGCTT	2 cut(s)	80, 734
HinfI	GANTC	2 cut(s)	463, 1376
HpaII	CCGG	6 cut(s)	99, 164, 596, 801, 818, 1280
HphI	GGTGA	3 cut(s)	130, 303, 957
Hpy166II	GTNNAC	2 cut(s)	620, 806
Hpy188I	TCNGA	3 cut(s)	325, 545, 979
Hpy188III	TCNNGA	5 cut(s)	318, 355, 972, 1009, 1373
Hpy8I	GTNNAC	2 cut(s)	620, 806
Hpy99I	CGWCG	1 cut(s)	1046
HpyAV	CCTTC	2 cut(s)	324, 978
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	2 cut(s)	297, 665
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 185, 398, 704, 707, 839, 1082
HpySE526I	ACGT	2 cut(s)	297, 665
KpnI	GGTACC	1 cut(s)	872
LmnI	GCTCC	2 cut(s)	86, 740
Lsp1109I	GCAGC	8 cut(s)	31, 172, 685, 719, 826, 893, 895, 896
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	8 cut(s)	176, 389, 495, 554, 830, 1073, 1179, 1238
MaeII	ACGT	2 cut(s)	297, 665
MboII	GAAGA	1 cut(s)	1342
MflI	RGATCY	3 cut(s)	455, 519, 1139
MhlI	GDGCHC	6 cut(s)	141, 154, 305, 762, 795, 808
MluCI	AATT	5 cut(s)	219, 367, 873, 1113, 1197
MnlI	CCTC	4 cut(s)	95, 268, 922, 1380
Mph1103I	ATGCAT	2 cut(s)	422, 1106
MseI	TTAA	2 cut(s)	291, 945
MspA1I	CMGCKG	2 cut(s)	44, 698
MspI	CCGG	6 cut(s)	99, 164, 596, 801, 818, 1280
MspR9I	CCNGG	2 cut(s)	164, 818
MwoI	GCNNNNNNNGC	7 cut(s)	53, 185, 398, 704, 707, 839, 1082
NciI	CCSGG	2 cut(s)	164, 818
NcoI	CCATGG	2 cut(s)	203, 857
NheI	GCTAGC	2 cut(s)	388, 1072
NlaIV	GGNNCC	4 cut(s)	216, 870, 1141, 1231
NmuCI	GTSAC	8 cut(s)	112, 169, 340, 355, 587, 682, 823, 1267
NsiI	ATGCAT	2 cut(s)	422, 1106
NspI	RCATGY	3 cut(s)	36, 690, 953
PagI	TCATGA	1 cut(s)	1008
PciI	ACATGT	2 cut(s)	32, 686
PfeI	GAWTC	2 cut(s)	463, 1376
PkrI	GCNGC	8 cut(s)	46, 187, 700, 709, 841, 883, 886, 910
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	1217
PscI	ACATGT	2 cut(s)	32, 686
Psp1406I	AACGTT	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	1217
PspCI	CACGTG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	1150
PspN4I	GGNNCC	4 cut(s)	216, 870, 1141, 1231
PspPI	GGNCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
PspPPI	RGGWCCY	1 cut(s)	1217
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	3 cut(s)	455, 519, 1139
PvuII	CAGCTG	2 cut(s)	44, 698
RsaI	GTAC	1 cut(s)	870
RsaNI	GTAC	1 cut(s)	869
SaqAI	TTAA	2 cut(s)	291, 945
SatI	GCNGC	8 cut(s)	45, 186, 699, 708, 840, 882, 885, 909
Sau96I	GGNCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
ScrFI	CCNGG	2 cut(s)	164, 818
SduI	GDGCHC	6 cut(s)	141, 154, 305, 762, 795, 808
SfaNI	GCATC	1 cut(s)	946
SfcI	CTRYAG	4 cut(s)	336, 657, 1062, 1095
SinI	GGWCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
Sse9I	AATT	5 cut(s)	219, 367, 873, 1113, 1197
SsiI	CCGC	3 cut(s)	227, 413, 1298
SspMI	CTAG	8 cut(s)	176, 389, 495, 554, 830, 1073, 1179, 1238
StyD4I	CCNGG	2 cut(s)	162, 816
StyI	CCWWGG	2 cut(s)	203, 857
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	2 cut(s)	300, 668
TaqI	TCGA	2 cut(s)	331, 1335
TasI	AATT	5 cut(s)	219, 367, 873, 1113, 1197
TfiI	GAWTC	2 cut(s)	463, 1376
Tru1I	TTAA	2 cut(s)	291, 945
Tru9I	TTAA	2 cut(s)	291, 945
TscAI	CASTG	3 cut(s)	543, 592, 1276
TseFI	GTSAC	8 cut(s)	112, 169, 340, 355, 587, 682, 823, 1267
TseI	GCWGC	8 cut(s)	44, 185, 698, 707, 839, 881, 884, 908
Tsp45I	GTSAC	8 cut(s)	112, 169, 340, 355, 587, 682, 823, 1267
TspGWI	ACGGA	1 cut(s)	1336
TspRI	CASTG	3 cut(s)	543, 592, 1276
VneI	GTGCAC	1 cut(s)	804
VpaK11BI	GGWCC	7 cut(s)	440, 482, 533, 1124, 1166, 1217, 1248
XagI	CCTNNNNNAGG	1 cut(s)	1224
XapI	RAATTY	1 cut(s)	1197
XceI	RCATGY	3 cut(s)	36, 690, 953
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XspI	CTAG	8 cut(s)	176, 389, 495, 554, 830, 1073, 1179, 1238
Zsp2I	ATGCAT	2 cut(s)	422, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.