Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002869

Physical Location & Seq

Genomic Coordinates Reverse (-)

3445579 .. 3448777

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1051500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTCCAATTGGTCAGTTAGCCTCACCGGAAAACCACCCGGCGACCTCCCAAAATCCAAACATGTCTGATCATATTCTGAAGTCATCGACATTATTTGAACAACAATATTACCCACCTGGCTTTTTCAAAAAGGTGGTGGCAGAGCTGATAGCAACGTATATGTTGGTGTTTGTCACGGCCGGCTCAGCTGCTCTTGCTGCCAGCGACGAACACAGAGTCTCAAAGCTTGGAGCTTGGATTGCAGGAGGGCTTATCATAACCGTGATGATCTATGCGGTCGGCCACATCTCCGGTGCGCACATGAACCCGGCCGTCACTCTTGCCTTCGCCGCCGTCCCAATTTATGCAGTAGCTCAACTAGCAGGATCAATATCTGCCTCGTTCACCCTGTCTGTACTATTGCACCCTATTAAACAACTTGGCACCACTTCACCTTCTGGATCAGAGATCCAAGCTTTGATCTCAGAGATAATCATGACATTTTCCATGGAGTTCGTAGCCTCCGCTGTCGCAACTGATACCAAAGCTGTAGGAGAGCTAGCAGGTATTGCGGTTGGCTCCGCGGTTTGCATAACTTCAATCTTTGCCGGGTGGATATCAATGAACCCAGAAAGGACAATAGGGCCAGCAATTACAAATGCATACTACAAAGGAATATGGGTCTACGTCGTTGGACCAGTGATAGGAGCCCTACTTGGCTCATGGTCCTACAGCTTCATTCGGGTCAGCGATAACCCGATCCAGGCAGTATCACCACCCTCATTTGCATTCAAGCTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

262

Amino Acids

27.44

Weight (kDa)

6.58

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	42 - 238	2.2e-42	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48500 FvH4_6g48510 FvH4_6g48540 FvH4_6g48560 FvH4_6g48560 FvH4_6g48570 FvH4_6g48580
malus_domestica	MD09G1051500.v1.1 MD17G1041700.v1.1 MD17G1041900.v1.1
prunus_persica	Prupe.3G267200_v2.0.a1
pyrus_communis	pycom111g04280 pycom17g04630 pycom17g04640
rosa_chinensis	RchiOBHm_Chr2g0168391
rosa_laevigata	RLG00000021776 RLG00000021777
rosa_multiflora	Rmu_co8307587.1_g000001 Rmu_co8437903.1_g000001 Rmu_sc0003354.1_g000028 Rmu_sc0003354.1_g000030 Rmu_sc0006073.1_g000001 Rmu_sc0007031.1_g000003
rosa_roxburghii	Rroxscaffold_2G00083050 Rroxscaffold_2G00083060
rosa_rugosa	Rorug02G0533700 Rorug02G0533700
rosa_samantha	Rh2AG602800 Rh2AG602900 Rh2BG616100 Rh2BG616200 Rh2BG616300 Rh2BG616400 Rh2CG583900 Rh2CG584000 Rh2DG626500 Rh2DG626600
rosa_wichuraiana	Rw2G050020 Rw2G050030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	300
Acc36I	ACCTGC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	425
AccI	GTMKAC	1 cut(s)	666
AccII	CGCG	1 cut(s)	566
AciI	CCGC	6 cut(s)	278, 333, 507, 554, 564, 566
AclWI	GGATC	4 cut(s)	376, 445, 451, 736
AcoI	YGGCCR	3 cut(s)	180, 283, 312
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	686, 745
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	4 cut(s)	101, 130, 582, 775
AjnI	CCWGG	2 cut(s)	118, 744
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	4 cut(s)	376, 445, 451, 736
AoxI	GGCC	4 cut(s)	180, 283, 312, 626
ApeKI	GCWGC	2 cut(s)	191, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	3 cut(s)	626, 677, 708
AsuC2I	CCSGG	3 cut(s)	41, 311, 592
AsuHPI	GGTGA	4 cut(s)	18, 379, 426, 747
AsuNHI	GCTAGC	1 cut(s)	541
AvaII	GGWCC	2 cut(s)	677, 708
BanI	GGYRCC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	178, 187
BceAI	ACGGC	3 cut(s)	195, 299, 320
BciT130I	CCWGG	2 cut(s)	120, 746
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	3 cut(s)	41, 311, 592
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	362, 542
BfmI	CTRYAG	2 cut(s)	531, 712
BfuAI	ACCTGC	1 cut(s)	536
BisI	GCNGC	3 cut(s)	192, 201, 333
BlpI	GCTNAGC	1 cut(s)	187
BlsI	GCNGC	3 cut(s)	193, 202, 334
Bme1390I	CCNGG	5 cut(s)	41, 120, 311, 592, 746
Bme18I	GGWCC	2 cut(s)	677, 708
BmgT120I	GGNCC	3 cut(s)	626, 677, 708
BmiI	GGNNCC	4 cut(s)	6, 427, 562, 691
BmrFI	CCNGG	5 cut(s)	41, 120, 311, 592, 746
BmtI	GCTAGC	1 cut(s)	545
Bpu1102I	GCTNAGC	1 cut(s)	187
BpuMI	CCSGG	3 cut(s)	41, 311, 592
BsaBI	GATNNNNATC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	489, 564
BsaWI	WCCGGW	2 cut(s)	28, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 745
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	680
Bse8I	GATNNNNATC	1 cut(s)	373
BseBI	CCWGG	2 cut(s)	120, 746
BseDI	CCNNGG	2 cut(s)	489, 564
BseJI	GATNNNNATC	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	686, 745
BseMII	CTCAG	2 cut(s)	201, 480
BseNI	ACTGG	1 cut(s)	680
BseX3I	CGGCCG	2 cut(s)	180, 312
BseXI	GCAGC	2 cut(s)	178, 187
Bsh1236I	CGCG	1 cut(s)	566
Bsh1285I	CGRYCG	3 cut(s)	183, 282, 315
BshFI	GGCC	4 cut(s)	182, 285, 314, 628
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	3 cut(s)	183, 282, 315
BsiSI	CCGG	6 cut(s)	29, 41, 183, 294, 311, 591
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	686, 745
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	4 cut(s)	182, 285, 314, 628
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp143I	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
Bsp1720I	GCTNAGC	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	489
BspACI	CCGC	6 cut(s)	278, 333, 507, 554, 564, 566
BspANI	GGCC	4 cut(s)	182, 285, 314, 628
BspCNI	CTCAG	2 cut(s)	200, 479
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	4 cut(s)	6, 427, 562, 691
BspMI	ACCTGC	1 cut(s)	536
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	4 cut(s)	376, 445, 451, 736
BspT107I	GGYRCC	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	680
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	489, 564
BssMI	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	120, 746
Bst4CI	ACNGT	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	4 cut(s)	184, 205, 543, 630
BstDEI	CTNAG	2 cut(s)	187, 466
BstDSI	CCRYGG	2 cut(s)	489, 564
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	7 cut(s)	73, 273, 371, 446, 453, 465, 744
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
BstMCI	CGRYCG	3 cut(s)	183, 282, 315
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 197, 200, 242, 332, 362, 551
BstNI	CCWGG	2 cut(s)	120, 746
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	5 cut(s)	39, 118, 309, 590, 744
BstSFI	CTRYAG	2 cut(s)	531, 712
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	178, 187
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BstZI	CGGCCG	2 cut(s)	180, 312
BsuRI	GGCC	4 cut(s)	182, 285, 314, 628
BtgI	CCRYGG	2 cut(s)	489, 564
BtsIMutI	CAGTG	1 cut(s)	687
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	4 cut(s)	184, 205, 543, 630
CciI	TCATGA	1 cut(s)	477
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	626, 677, 708
Cfr42I	CCGCGG	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	5 cut(s)	64, 304, 478, 490, 705
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	187, 466
DpnI	GATC	7 cut(s)	72, 272, 370, 445, 452, 464, 743
DpnII	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
EaeI	YGGCCR	3 cut(s)	180, 283, 312
EagI	CGGCCG	2 cut(s)	180, 312
EclXI	CGGCCG	2 cut(s)	180, 312
Eco130I	CCWWGG	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	694
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	2 cut(s)	677, 708
Eco52I	CGGCCG	2 cut(s)	180, 312
Eco57I	CTGAAG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	118, 744
EcoRV	GATATC	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	67, 307, 481, 493, 708
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	5 cut(s)	63, 303, 477, 489, 704
FbaI	TGATCA	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	192, 201, 333
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	3 cut(s)	192, 201, 333
FspAI	RTGCGCAY	1 cut(s)	300
FspBI	CTAG	2 cut(s)	362, 542
FspI	TGCGCA	1 cut(s)	300
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	3 cut(s)	192, 201, 333
HaeIII	GGCC	4 cut(s)	182, 285, 314, 628
HapII	CCGG	6 cut(s)	29, 41, 183, 294, 311, 591
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	5 cut(s)	67, 307, 481, 493, 708
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HindIII	AAGCTT	3 cut(s)	227, 456, 776
HinfI	GANTC	1 cut(s)	219
HpaII	CCGG	6 cut(s)	29, 41, 183, 294, 311, 591
HphI	GGTGA	4 cut(s)	18, 379, 426, 747
Hpy166II	GTNNAC	2 cut(s)	387, 667
Hpy188I	TCNGA	4 cut(s)	70, 81, 448, 469
Hpy188III	TCNNGA	2 cut(s)	441, 478
Hpy8I	GTNNAC	2 cut(s)	387, 667
Hpy99I	CGWCG	2 cut(s)	212, 674
HpyAV	CCTTC	2 cut(s)	337, 447
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	158, 669
HpyCH4V	TGCA	6 cut(s)	245, 350, 406, 573, 644, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 197, 200, 242, 332, 362, 551
HpyF3I	CTNAG	2 cut(s)	187, 466
HpySE526I	ACGT	2 cut(s)	158, 669
Hsp92II	CATG	5 cut(s)	67, 307, 481, 493, 708
HspAI	GCGC	1 cut(s)	299
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	70
KspI	CCGCGG	1 cut(s)	567
Kzo9I	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
LmnI	GCTCC	4 cut(s)	10, 233, 566, 689
Lsp1109I	GCAGC	2 cut(s)	178, 187
MaeI	CTAG	2 cut(s)	362, 542
MaeII	ACGT	2 cut(s)	158, 669
MaeIII	GTNAC	2 cut(s)	175, 316
MalI	GATC	7 cut(s)	72, 272, 370, 445, 452, 464, 743
MboI	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	694
MluCI	AATT	3 cut(s)	9, 342, 633
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	6 cut(s)	34, 58, 242, 391, 514, 772
Mph1103I	ATGCAT	1 cut(s)	646
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	3 cut(s)	191, 509, 566
MspI	CCGG	6 cut(s)	29, 41, 183, 294, 311, 591
MspR9I	CCNGG	5 cut(s)	41, 120, 311, 592, 746
MunI	CAATTG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	2 cut(s)	120, 746
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	7 cut(s)	188, 197, 200, 242, 332, 362, 551
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	3 cut(s)	41, 311, 592
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
NgoMIV	GCCGGC	1 cut(s)	182
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	5 cut(s)	67, 307, 481, 493, 708
NlaIV	GGNNCC	4 cut(s)	6, 427, 562, 691
NmuCI	GTSAC	2 cut(s)	175, 316
NsbI	TGCGCA	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	477
PciI	ACATGT	1 cut(s)	63
PctI	GAATGC	1 cut(s)	770
PdiI	GCCGGC	1 cut(s)	184
PkrI	GCNGC	3 cut(s)	193, 202, 334
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PscI	ACATGT	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	118, 744
PspGI	CCWGG	2 cut(s)	118, 744
PspN4I	GGNNCC	4 cut(s)	6, 427, 562, 691
PspPI	GGNCC	3 cut(s)	626, 677, 708
PsuI	RGATCY	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	567
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	3 cut(s)	192, 201, 333
Sau3AI	GATC	7 cut(s)	70, 270, 368, 443, 450, 462, 741
Sau96I	GGNCC	3 cut(s)	626, 677, 708
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	5 cut(s)	41, 120, 311, 592, 746
SduI	GDGCHC	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	531, 712
Sfr303I	CCGCGG	1 cut(s)	567
SgrBI	CCGCGG	1 cut(s)	567
SinI	GGWCC	2 cut(s)	677, 708
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	9, 342, 633
SsiI	CCGC	6 cut(s)	278, 333, 507, 554, 564, 566
SspI	AATATT	1 cut(s)	110
SspMI	CTAG	2 cut(s)	362, 542
StyD4I	CCNGG	5 cut(s)	39, 118, 309, 590, 744
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	2 cut(s)	161, 672
TaqI	TCGA	1 cut(s)	89
TasI	AATT	3 cut(s)	9, 342, 633
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	2 cut(s)	175, 316
TseI	GCWGC	2 cut(s)	191, 200
Tsp45I	GTSAC	2 cut(s)	175, 316
TspDTI	ATGAA	3 cut(s)	320, 620, 709
TspRI	CASTG	1 cut(s)	687
VpaK11BI	GGWCC	2 cut(s)	677, 708
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	666
XspI	CTAG	2 cut(s)	362, 542
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.